Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002869

Physical Location & Seq

Genomic Coordinates Forward (+)

83823181 .. 83859757

Gene Structure 36577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG616400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAACCCAGCCAGAACATTAGGACCAGCACTTGCTAGTGCATACTACAAGGGAATTTGGGTCTATGTGGTAGGACCTGTGATAGGAACCCTACTAGGGGCATGGACCTACAACTTCATTCGGGTCACTGACAAGCCGGTTCAGGGCATACCACCGCACTCATTTTCATTCAAGCTACGGAGAATGAAGATCGAAAATGATCGGCAGTGGTACTTGAGATTGCTTCACATGGTCACATTAGATCATCTTGATATTCTTCACTTAGATGCATCATGCATGGATGCATTAAGTTTAGATGCAGTTCCAACTGTAATTGTGACAACAAAAATAACTCTAAGCAGCAGCCATGTCGTGCACCTCATCTACATGCCAGGTTCAGACCAAGGTCCTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

131

Amino Acids

14.6

Weight (kDa)

8.79

Isoelectric Point (pI)

32.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	1 - 37	1.3e-10	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48500 FvH4_6g48510 FvH4_6g48540 FvH4_6g48560 FvH4_6g48560 FvH4_6g48570 FvH4_6g48580
malus_domestica	MD09G1051500.v1.1 MD17G1041700.v1.1 MD17G1041900.v1.1
prunus_persica	Prupe.3G267200_v2.0.a1
pyrus_communis	pycom111g04280 pycom17g04630 pycom17g04640
rosa_chinensis	RchiOBHm_Chr2g0168391
rosa_laevigata	RLG00000021776 RLG00000021777
rosa_multiflora	Rmu_co8307587.1_g000001 Rmu_co8437903.1_g000001 Rmu_sc0003354.1_g000028 Rmu_sc0003354.1_g000030 Rmu_sc0006073.1_g000001 Rmu_sc0007031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083050 Rroxscaffold_2G00083060
rosa_rugosa	Rorug02G0533700 Rorug02G0533700
rosa_samantha	Rh2AG602800 Rh2AG602900 Rh2BG616100 Rh2BG616200 Rh2BG616300 Rh2BG616400 Rh2CG583900 Rh2CG584000 Rh2DG626500 Rh2DG626600
rosa_wichuraiana	Rw2G050020 Rw2G050030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	54
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	4 cut(s)	83, 96, 97, 143
AgsI	TTSAA	1 cut(s)	172
AjnI	CCWGG	2 cut(s)	370, 388
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
Alw21I	GWGCWC	1 cut(s)	357
Alw44I	GTGCAC	1 cut(s)	353
ApaLI	GTGCAC	1 cut(s)	353
ApeKI	GCWGC	2 cut(s)	339, 342
ApoI	RAATTY	1 cut(s)	54
AspS9I	GGNCC	4 cut(s)	23, 74, 105, 386
AvaII	GGWCC	4 cut(s)	23, 74, 105, 386
BaeGI	GKGCMC	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	351, 354
BcgI	CGANNNNNNTGC	2 cut(s)	331, 365
BciT130I	CCWGG	2 cut(s)	372, 390
BfaI	CTAG	3 cut(s)	36, 95, 394
BisI	GCNGC	2 cut(s)	340, 343
BlsI	GCNGC	2 cut(s)	341, 344
Bme1390I	CCNGG	2 cut(s)	372, 390
Bme18I	GGWCC	4 cut(s)	23, 74, 105, 386
BmgT120I	GGNCC	4 cut(s)	23, 74, 105, 386
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	2 cut(s)	372, 390
BmsI	GCATC	4 cut(s)	256, 271, 278, 286
BoxI	GACNNNNGTC	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 96, 97, 143
Bse118I	RCCGGY	1 cut(s)	136
BseBI	CCWGG	2 cut(s)	372, 390
BseDI	CCNNGG	1 cut(s)	382
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	4 cut(s)	83, 96, 97, 143
BseSI	GKGCMC	1 cut(s)	357
BseXI	GCAGC	2 cut(s)	351, 354
BseYI	CCCAGC	1 cut(s)	7
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	1 cut(s)	137
BslI	CCNNNNNNNGG	4 cut(s)	83, 96, 97, 143
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	3 cut(s)	189, 199, 241
BspACI	CCGC	1 cut(s)	155
BspLI	GGNNCC	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	136
BssAI	RCCGGY	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	3 cut(s)	189, 199, 241
BssT1I	CCWWGG	1 cut(s)	382
Bst2UI	CCWGG	2 cut(s)	372, 390
Bst4CI	ACNGT	1 cut(s)	310
BstDEI	CTNAG	2 cut(s)	262, 335
BstENI	CCTNNNNNAGG	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	3 cut(s)	192, 202, 244
BstMBI	GATC	3 cut(s)	189, 199, 241
BstNI	CCWGG	2 cut(s)	372, 390
BstNSI	RCATGY	1 cut(s)	370
BstPAI	GACNNNNGTC	1 cut(s)	384
BstSCI	CCNGG	2 cut(s)	370, 388
BstSLI	GKGCMC	1 cut(s)	357
BstV1I	GCAGC	2 cut(s)	351, 354
BstXI	CCANNNNNNTGG	1 cut(s)	389
BtsCI	GGATG	1 cut(s)	286
BtsI	GCAGTG	1 cut(s)	212
BtsIMutI	CAGTG	2 cut(s)	126, 212
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	4 cut(s)	23, 74, 105, 386
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	6 cut(s)	102, 229, 273, 277, 347, 367
CviJI	RGCY	5 cut(s)	11, 136, 175, 345, 393
CviKI_1	RGCY	5 cut(s)	11, 136, 175, 345, 393
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	2 cut(s)	262, 335
DpnI	GATC	3 cut(s)	191, 201, 243
DpnII	GATC	3 cut(s)	189, 199, 241
Eco130I	CCWWGG	1 cut(s)	382
Eco47I	GGWCC	4 cut(s)	23, 74, 105, 386
EcoNI	CCTNNNNNAGG	1 cut(s)	81
EcoO109I	RGGNCCY	2 cut(s)	74, 386
EcoRII	CCWGG	2 cut(s)	370, 388
EcoT14I	CCWWGG	1 cut(s)	382
EcoT22I	ATGCAT	3 cut(s)	271, 278, 286
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	6 cut(s)	105, 232, 276, 280, 350, 370
FaiI	YATR	9 cut(s)	43, 66, 103, 149, 230, 274, 278, 348, 368
FatI	CATG	6 cut(s)	101, 228, 272, 276, 346, 366
Fnu4HI	GCNGC	2 cut(s)	340, 343
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	2 cut(s)	340, 343
FspBI	CTAG	3 cut(s)	36, 95, 394
GluI	GCNGC	2 cut(s)	340, 343
GsaI	CCCAGC	1 cut(s)	11
HapII	CCGG	1 cut(s)	137
Hin1II	CATG	6 cut(s)	105, 232, 276, 280, 350, 370
HpaII	CCGG	1 cut(s)	137
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	1 cut(s)	379
Hpy188III	TCNNGA	1 cut(s)	248
Hpy8I	GTNNAC	1 cut(s)	355
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4V	TGCA	6 cut(s)	41, 269, 276, 284, 299, 355
HpyF3I	CTNAG	2 cut(s)	262, 335
Hsp92II	CATG	6 cut(s)	105, 232, 276, 280, 350, 370
Kzo9I	GATC	3 cut(s)	189, 199, 241
LpnPI	CCDG	9 cut(s)	21, 25, 39, 90, 128, 150, 357, 375, 384
Lsp1109I	GCAGC	2 cut(s)	351, 354
LweI	GCATC	4 cut(s)	256, 271, 278, 286
MaeI	CTAG	3 cut(s)	36, 95, 394
MaeIII	GTNAC	3 cut(s)	124, 232, 316
MalI	GATC	3 cut(s)	191, 201, 243
MboI	GATC	3 cut(s)	189, 199, 241
MboII	GAAGA	2 cut(s)	199, 248
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	2 cut(s)	54, 312
MmeI	TCCRAC	1 cut(s)	329
MnlI	CCTC	1 cut(s)	368
Mph1103I	ATGCAT	3 cut(s)	271, 278, 286
MseI	TTAA	1 cut(s)	287
MslI	CAYNNNNRTG	2 cut(s)	264, 365
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	2 cut(s)	372, 390
MvaI	CCWGG	2 cut(s)	372, 390
NdeII	GATC	3 cut(s)	189, 199, 241
NlaIII	CATG	6 cut(s)	105, 232, 276, 280, 350, 370
NlaIV	GGNNCC	1 cut(s)	88
NmuCI	GTSAC	3 cut(s)	124, 232, 316
NsiI	ATGCAT	3 cut(s)	271, 278, 286
NspI	RCATGY	1 cut(s)	370
PkrI	GCNGC	2 cut(s)	341, 344
PpuMI	RGGWCCY	2 cut(s)	74, 386
PshAI	GACNNNNGTC	1 cut(s)	384
Psp5II	RGGWCCY	2 cut(s)	74, 386
Psp6I	CCWGG	2 cut(s)	370, 388
PspFI	CCCAGC	1 cut(s)	7
PspGI	CCWGG	2 cut(s)	370, 388
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	4 cut(s)	23, 74, 105, 386
PspPPI	RGGWCCY	2 cut(s)	74, 386
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	2 cut(s)	264, 365
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	2 cut(s)	340, 343
Sau3AI	GATC	3 cut(s)	189, 199, 241
Sau96I	GGNCC	4 cut(s)	23, 74, 105, 386
ScrFI	CCNGG	2 cut(s)	372, 390
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	6 cut(s)	79, 110, 177, 360, 376, 388
SfaNI	GCATC	4 cut(s)	256, 271, 278, 286
SinI	GGWCC	4 cut(s)	23, 74, 105, 386
SmiMI	CAYNNNNRTG	2 cut(s)	264, 365
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
Sse9I	AATT	2 cut(s)	54, 312
SsiI	CCGC	1 cut(s)	155
SspMI	CTAG	3 cut(s)	36, 95, 394
StyD4I	CCNGG	2 cut(s)	370, 388
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	1 cut(s)	310
TaqI	TCGA	1 cut(s)	192
TasI	AATT	2 cut(s)	54, 312
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TscAI	CASTG	2 cut(s)	133, 212
TseFI	GTSAC	3 cut(s)	124, 232, 316
TseI	GCWGC	2 cut(s)	339, 342
Tsp45I	GTSAC	3 cut(s)	124, 232, 316
TspDTI	ATGAA	4 cut(s)	17, 106, 156, 200
TspGWI	ACGGA	1 cut(s)	193
TspRI	CASTG	2 cut(s)	133, 212
VneI	GTGCAC	1 cut(s)	353
VpaK11BI	GGWCC	4 cut(s)	23, 74, 105, 386
XagI	CCTNNNNNAGG	1 cut(s)	81
XapI	RAATTY	1 cut(s)	54
XceI	RCATGY	1 cut(s)	370
XspI	CTAG	3 cut(s)	36, 95, 394
Zsp2I	ATGCAT	3 cut(s)	271, 278, 286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.