Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8437903.1

Orthogroup ID

OG0002869

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 869

Gene Structure 869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8437903.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

atgaacccagccagaacattaggaccagcacttgctagtgcatactacaagggaatttgggtctatgtggtaggacctgtgataggaaccctactaggggcatggacctacaacttcattcgggtcactgacaagccggttcagggcataccaccgcactcattttcattcaagctacggagaatgaagatcgaaaatgatcggcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

69

Amino Acids

7.81

Weight (kDa)

10.2

Isoelectric Point (pI)

21.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48500 FvH4_6g48510 FvH4_6g48540 FvH4_6g48560 FvH4_6g48560 FvH4_6g48570 FvH4_6g48580
malus_domestica	MD09G1051500.v1.1 MD17G1041700.v1.1 MD17G1041900.v1.1
prunus_persica	Prupe.3G267200_v2.0.a1
pyrus_communis	pycom111g04280 pycom17g04630 pycom17g04640
rosa_chinensis	RchiOBHm_Chr2g0168391
rosa_laevigata	RLG00000021776 RLG00000021777
rosa_multiflora	Rmu_co8307587.1_g000001 Rmu_co8437903.1_g000001 Rmu_sc0003354.1_g000028 Rmu_sc0003354.1_g000030 Rmu_sc0006073.1_g000001 Rmu_sc0007031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083050 Rroxscaffold_2G00083060
rosa_rugosa	Rorug02G0533700 Rorug02G0533700
rosa_samantha	Rh2AG602800 Rh2AG602900 Rh2BG616100 Rh2BG616200 Rh2BG616300 Rh2BG616400 Rh2CG583900 Rh2CG584000 Rh2DG626500 Rh2DG626600
rosa_wichuraiana	Rw2G050020 Rw2G050030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	54
AfiI	CCNNNNNNNGG	4 cut(s)	83, 96, 97, 143
AgsI	TTSAA	1 cut(s)	172
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
ApoI	RAATTY	1 cut(s)	54
AspS9I	GGNCC	3 cut(s)	23, 74, 105
AvaII	GGWCC	3 cut(s)	23, 74, 105
BfaI	CTAG	2 cut(s)	36, 95
Bme18I	GGWCC	3 cut(s)	23, 74, 105
BmgT120I	GGNCC	3 cut(s)	23, 74, 105
BmiI	GGNNCC	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 96, 97, 143
Bse118I	RCCGGY	1 cut(s)	136
BseLI	CCNNNNNNNGG	4 cut(s)	83, 96, 97, 143
BseYI	CCCAGC	1 cut(s)	7
BsiSI	CCGG	1 cut(s)	137
BslI	CCNNNNNNNGG	4 cut(s)	83, 96, 97, 143
Bsp143I	GATC	2 cut(s)	189, 199
BspACI	CCGC	1 cut(s)	155
BspLI	GGNNCC	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	136
BssAI	RCCGGY	1 cut(s)	136
BssMI	GATC	2 cut(s)	189, 199
BstENI	CCTNNNNNAGG	1 cut(s)	81
BstKTI	GATC	2 cut(s)	192, 202
BstMBI	GATC	2 cut(s)	189, 199
BtsIMutI	CAGTG	1 cut(s)	126
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	3 cut(s)	23, 74, 105
CviAII	CATG	1 cut(s)	102
CviJI	RGCY	3 cut(s)	11, 136, 175
CviKI_1	RGCY	3 cut(s)	11, 136, 175
DpnI	GATC	2 cut(s)	191, 201
DpnII	GATC	2 cut(s)	189, 199
Eco47I	GGWCC	3 cut(s)	23, 74, 105
EcoNI	CCTNNNNNAGG	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	74
FaeI	CATG	1 cut(s)	105
FaiI	YATR	4 cut(s)	43, 66, 103, 149
FatI	CATG	1 cut(s)	101
FspBI	CTAG	2 cut(s)	36, 95
GsaI	CCCAGC	1 cut(s)	11
HapII	CCGG	1 cut(s)	137
Hin1II	CATG	1 cut(s)	105
HpaII	CCGG	1 cut(s)	137
HpyCH4V	TGCA	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	105
Kzo9I	GATC	2 cut(s)	189, 199
LpnPI	CCDG	6 cut(s)	21, 25, 39, 90, 128, 150
MaeI	CTAG	2 cut(s)	36, 95
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	2 cut(s)	191, 201
MboI	GATC	2 cut(s)	189, 199
MboII	GAAGA	1 cut(s)	199
MluCI	AATT	1 cut(s)	54
MspI	CCGG	1 cut(s)	137
NdeII	GATC	2 cut(s)	189, 199
NlaIII	CATG	1 cut(s)	105
NlaIV	GGNNCC	1 cut(s)	88
NmuCI	GTSAC	1 cut(s)	124
PpuMI	RGGWCCY	1 cut(s)	74
Psp5II	RGGWCCY	1 cut(s)	74
PspFI	CCCAGC	1 cut(s)	7
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	3 cut(s)	23, 74, 105
PspPPI	RGGWCCY	1 cut(s)	74
Sau3AI	GATC	2 cut(s)	189, 199
Sau96I	GGNCC	3 cut(s)	23, 74, 105
SetI	ASST	3 cut(s)	79, 110, 177
SinI	GGWCC	3 cut(s)	23, 74, 105
Sse9I	AATT	1 cut(s)	54
SsiI	CCGC	1 cut(s)	155
SspMI	CTAG	2 cut(s)	36, 95
TaqI	TCGA	1 cut(s)	192
TasI	AATT	1 cut(s)	54
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	4 cut(s)	17, 106, 156, 200
TspGWI	ACGGA	1 cut(s)	193
TspRI	CASTG	1 cut(s)	133
VpaK11BI	GGWCC	3 cut(s)	23, 74, 105
XagI	CCTNNNNNAGG	1 cut(s)	81
XapI	RAATTY	1 cut(s)	54
XspI	CTAG	2 cut(s)	36, 95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.