Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002869

Physical Location & Seq

Genomic Coordinates Forward (+)

24990592 .. 24993297

Gene Structure 2706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G267200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCCACAAAACATCCAGAGCCTGGAAACCACAACACAAACGAGTTAGTCTCAGTGCAGGAAAACCACCCCATATCCCAAAATCCAACATTTGAACAACAATATTACCCACCTGGCTTTTTCAGAAAGGTGGTGGCGGAGATGATAGCGACGTACATGTTGGTGTTTGTGACTTGTGGTTCGGCTGCTCTTGCTGCCAGCGATGAACACAAAGTGTCAAGGCTTGGAGCTTCAATTGCAGGAGGGCTGGTAGTGACCGTGATGATCTATGCGGTTGGCCACATCTCTGGGGCACACATGAACCCTGCCGTCACTCTAGCTTTTGCTGCTGTTAGGCATTTTCCATGGAAACAGGTCCCAATCTATTGGGTAGCTCAACTAGCAGGATCCATATCTGCCTCATTTACGCTTTCTGTGCTATTGCATCCAATCAAACATGTTGGCACCACATCACCTTCTGGATCAGACTTTCAAGCTTTGATCGCAGAAATTGTCATGACATTCTCCATGATGTTCATCGCTTCAGCAGTGGCAACCGATACCAAAGCTATAGGAGAGCTGGCAGGTGTAGCAGTTGGCTCCGCAGTTTGCATAACTTCAATCTTTGCTGGACCAATATCAGGTGGATCCATGAACCCAGCCAGGACAATAGGTCCCGCAATTGCAAGCACATACTACAAGGGAATCTGGGTCTACGTCGTTGGACCAGTGATAGGAACCCTACTTGGGTCATGGTCCTACAACTTCATTCGGGTCAGTGATAACCCTACCCAGCCAATATCACCACCACCTCCACCACGCTCATTTGCATTCAAGCTTCGTCGAATGAAGAGCGACAATGGCCAAGTTCCCTGCAAAGATCCTCTCGATTCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

293

Amino Acids

31.02

Weight (kDa)

8.73

Isoelectric Point (pI)

28.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48500 FvH4_6g48510 FvH4_6g48540 FvH4_6g48560 FvH4_6g48560 FvH4_6g48570 FvH4_6g48580
malus_domestica	MD09G1051500.v1.1 MD17G1041700.v1.1 MD17G1041900.v1.1
prunus_persica	Prupe.3G267200_v2.0.a1
pyrus_communis	pycom111g04280 pycom17g04630 pycom17g04640
rosa_chinensis	RchiOBHm_Chr2g0168391
rosa_laevigata	RLG00000021776 RLG00000021777
rosa_multiflora	Rmu_co8307587.1_g000001 Rmu_co8437903.1_g000001 Rmu_sc0003354.1_g000028 Rmu_sc0003354.1_g000030 Rmu_sc0006073.1_g000001 Rmu_sc0007031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083050 Rroxscaffold_2G00083060
rosa_rugosa	Rorug02G0533700 Rorug02G0533700
rosa_samantha	Rh2AG602800 Rh2AG602900 Rh2BG616100 Rh2BG616200 Rh2BG616300 Rh2BG616400 Rh2CG583900 Rh2CG584000 Rh2DG626500 Rh2DG626600
rosa_wichuraiana	Rw2G050020 Rw2G050030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	554
Acc36I	ACCTGC	1 cut(s)	554
AccB1I	GGYRCC	1 cut(s)	443
AccB7I	CCANNNNNTGG	1 cut(s)	23
AccI	GTMKAC	1 cut(s)	693
AciI	CCGC	4 cut(s)	137, 272, 582, 657
AclWI	GGATC	6 cut(s)	381, 394, 469, 621, 634, 854
AcoI	YGGCCR	3 cut(s)	3, 277, 841
AcuI	CTGAAG	1 cut(s)	507
AdeI	CACNNNGTG	1 cut(s)	214
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	4 cut(s)	23, 620, 713, 726
AflIII	ACRYGT	2 cut(s)	156, 436
AgsI	TTSAA	5 cut(s)	95, 234, 473, 600, 814
AhdI	GACNNNNNGTC	1 cut(s)	651
AjnI	CCWGG	3 cut(s)	22, 112, 641
AluBI	AGCT	8 cut(s)	230, 320, 374, 476, 548, 559, 817, 875
AluI	AGCT	8 cut(s)	230, 320, 374, 476, 548, 559, 817, 875
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	6 cut(s)	381, 394, 469, 621, 634, 854
AlwNI	CAGNNNCTG	1 cut(s)	23
AoxI	GGCC	3 cut(s)	3, 277, 841
ApeKI	GCWGC	3 cut(s)	185, 194, 326
ArsI	GACNNNNNNTTYG	2 cut(s)	163, 195
AspS9I	GGNCC	5 cut(s)	355, 611, 653, 704, 735
AsuHPI	GGTGA	2 cut(s)	444, 774
AvaII	GGWCC	5 cut(s)	355, 611, 653, 704, 735
BaeGI	GKGCMC	1 cut(s)	295
BalI	TGGCCA	3 cut(s)	5, 279, 843
BamHI	GGATCC	2 cut(s)	386, 626
BanI	GGYRCC	1 cut(s)	443
BbvI	GCAGC	3 cut(s)	172, 181, 313
BceAI	ACGGC	1 cut(s)	293
BciT130I	CCWGG	3 cut(s)	24, 114, 643
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	2 cut(s)	317, 380
BfmI	CTRYAG	1 cut(s)	549
BfuAI	ACCTGC	1 cut(s)	554
BisI	GCNGC	3 cut(s)	186, 195, 327
BlsI	GCNGC	3 cut(s)	187, 196, 328
Bme1390I	CCNGG	3 cut(s)	24, 114, 643
Bme18I	GGWCC	5 cut(s)	355, 611, 653, 704, 735
BmeRI	GACNNNNNGTC	1 cut(s)	651
BmgT120I	GGNCC	5 cut(s)	355, 611, 653, 704, 735
BmiI	GGNNCC	7 cut(s)	357, 388, 445, 580, 628, 655, 718
BmrFI	CCNGG	3 cut(s)	24, 114, 643
BmsI	GCATC	1 cut(s)	433
BplI	GAGNNNNNCTC	2 cut(s)	35, 67
BsaBI	GATNNNNATC	2 cut(s)	391, 515
BsaJI	CCNNGG	1 cut(s)	344
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	4 cut(s)	23, 620, 713, 726
Bse1I	ACTGG	1 cut(s)	707
Bse8I	GATNNNNATC	2 cut(s)	391, 515
BseBI	CCWGG	3 cut(s)	24, 114, 643
BseDI	CCNNGG	1 cut(s)	344
BseGI	GGATG	2 cut(s)	13, 424
BseJI	GATNNNNATC	2 cut(s)	391, 515
BseLI	CCNNNNNNNGG	4 cut(s)	23, 620, 713, 726
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	707
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	3 cut(s)	172, 181, 313
BseYI	CCCAGC	2 cut(s)	637, 771
BsgI	GTGCAG	1 cut(s)	77
BshFI	GGCC	3 cut(s)	5, 279, 843
BshNI	GGYRCC	1 cut(s)	443
BslFI	GGGAC	2 cut(s)	341, 639
BslI	CCNNNNNNNGG	4 cut(s)	23, 620, 713, 726
BsmAI	GTCTC	1 cut(s)	55
BsmFI	GGGAC	2 cut(s)	341, 639
BsmI	GAATGC	1 cut(s)	809
BsnI	GGCC	3 cut(s)	5, 279, 843
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	6 cut(s)	264, 386, 461, 480, 626, 859
Bsp19I	CCATGG	1 cut(s)	344
BspACI	CCGC	4 cut(s)	137, 272, 582, 657
BspANI	GGCC	3 cut(s)	5, 279, 843
BspCNI	CTCAG	1 cut(s)	65
BspHI	TCATGA	1 cut(s)	495
BspLI	GGNNCC	7 cut(s)	357, 388, 445, 580, 628, 655, 718
BspMI	ACCTGC	1 cut(s)	554
BspPI	GGATC	6 cut(s)	381, 394, 469, 621, 634, 854
BspQI	GCTCTTC	1 cut(s)	824
BspT107I	GGYRCC	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	707
BssECI	CCNNGG	1 cut(s)	344
BssMI	GATC	6 cut(s)	264, 386, 461, 480, 626, 859
BssT1I	CCWWGG	1 cut(s)	344
Bst2UI	CCWGG	3 cut(s)	24, 114, 643
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	1 cut(s)	824
BstC8I	GCNNGC	3 cut(s)	199, 561, 667
BstDEI	CTNAG	1 cut(s)	52
BstDSI	CCRYGG	1 cut(s)	344
BstF5I	GGATG	2 cut(s)	13, 424
BstKTI	GATC	6 cut(s)	267, 389, 464, 483, 629, 862
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	6 cut(s)	264, 386, 461, 480, 626, 859
BstMWI	GCNNNNNNNGC	9 cut(s)	191, 194, 236, 326, 380, 415, 482, 569, 840
BstNI	CCWGG	3 cut(s)	24, 114, 643
BstNSI	RCATGY	2 cut(s)	160, 440
BstSCI	CCNGG	3 cut(s)	22, 112, 641
BstSFI	CTRYAG	1 cut(s)	549
BstSLI	GKGCMC	1 cut(s)	295
BstV1I	GCAGC	3 cut(s)	172, 181, 313
BstX2I	RGATCY	3 cut(s)	386, 626, 859
BstXI	CCANNNNNNTGG	2 cut(s)	287, 366
BstYI	RGATCY	3 cut(s)	386, 626, 859
BsuRI	GGCC	3 cut(s)	5, 279, 843
BtgI	CCRYGG	1 cut(s)	344
BtgZI	GCGATG	2 cut(s)	216, 502
BtsCI	GGATG	2 cut(s)	13, 424
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	4 cut(s)	60, 534, 714, 763
BveI	ACCTGC	1 cut(s)	554
Cac8I	GCNNGC	3 cut(s)	199, 561, 667
CaiI	CAGNNNCTG	1 cut(s)	23
CciI	TCATGA	1 cut(s)	495
Cfr13I	GGNCC	5 cut(s)	355, 611, 653, 704, 735
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	8 cut(s)	157, 298, 345, 437, 496, 508, 631, 732
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	1 cut(s)	52
DpnI	GATC	6 cut(s)	266, 388, 463, 482, 628, 861
DpnII	GATC	6 cut(s)	264, 386, 461, 480, 626, 859
DraIII	CACNNNGTG	1 cut(s)	214
DriI	GACNNNNNGTC	1 cut(s)	651
EaeI	YGGCCR	3 cut(s)	3, 277, 841
Eam1104I	CTCTTC	1 cut(s)	824
Eam1105I	GACNNNNNGTC	1 cut(s)	651
EarI	CTCTTC	1 cut(s)	824
EciI	GGCGGA	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	344
Eco47I	GGWCC	5 cut(s)	355, 611, 653, 704, 735
Eco57I	CTGAAG	1 cut(s)	507
EcoO109I	RGGNCCY	2 cut(s)	355, 653
EcoRII	CCWGG	3 cut(s)	22, 112, 641
EcoT14I	CCWWGG	1 cut(s)	344
ErhI	CCWWGG	1 cut(s)	344
FaeI	CATG	8 cut(s)	160, 301, 348, 440, 499, 511, 634, 735
FaqI	GGGAC	2 cut(s)	341, 639
FatI	CATG	8 cut(s)	156, 297, 344, 436, 495, 507, 630, 731
FauI	CCCGC	1 cut(s)	664
FblI	GTMKAC	1 cut(s)	693
Fnu4HI	GCNGC	3 cut(s)	186, 195, 327
FokI	GGATG	1 cut(s)	411
Fsp4HI	GCNGC	3 cut(s)	186, 195, 327
FspBI	CTAG	2 cut(s)	317, 380
GluI	GCNGC	3 cut(s)	186, 195, 327
GsaI	CCCAGC	2 cut(s)	641, 775
HaeIII	GGCC	3 cut(s)	5, 279, 843
Hin1II	CATG	8 cut(s)	160, 301, 348, 440, 499, 511, 634, 735
HindIII	AAGCTT	2 cut(s)	474, 815
HinfI	GANTC	2 cut(s)	684, 869
HphI	GGTGA	2 cut(s)	444, 774
Hpy166II	GTNNAC	1 cut(s)	694
Hpy188I	TCNGA	2 cut(s)	125, 466
Hpy188III	TCNNGA	4 cut(s)	17, 459, 496, 866
Hpy8I	GTNNAC	1 cut(s)	694
Hpy99I	CGWCG	3 cut(s)	154, 701, 825
HpyAV	CCTTC	1 cut(s)	465
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	2 cut(s)	152, 696
HpyCH4V	TGCA	7 cut(s)	58, 239, 424, 591, 665, 809, 855
HpyF10VI	GCNNNNNNNGC	9 cut(s)	191, 194, 236, 326, 380, 415, 482, 569, 840
HpyF3I	CTNAG	1 cut(s)	52
HpySE526I	ACGT	2 cut(s)	152, 696
Hsp92II	CATG	8 cut(s)	160, 301, 348, 440, 499, 511, 634, 735
Kzo9I	GATC	6 cut(s)	264, 386, 461, 480, 626, 859
LguI	GCTCTTC	1 cut(s)	824
LmnI	GCTCC	2 cut(s)	227, 584
Lsp1109I	GCAGC	3 cut(s)	172, 181, 313
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	2 cut(s)	317, 380
MaeII	ACGT	2 cut(s)	152, 696
MaeIII	GTNAC	3 cut(s)	169, 253, 310
MalI	GATC	6 cut(s)	266, 388, 463, 482, 628, 861
MboI	GATC	6 cut(s)	264, 386, 461, 480, 626, 859
MboII	GAAGA	1 cut(s)	841
MfeI	CAATTG	2 cut(s)	234, 660
MflI	RGATCY	3 cut(s)	386, 626, 859
MhlI	GDGCHC	1 cut(s)	295
MlsI	TGGCCA	3 cut(s)	5, 279, 843
MluCI	AATT	3 cut(s)	234, 489, 660
MluNI	TGGCCA	3 cut(s)	5, 279, 843
MmeI	TCCRAC	2 cut(s)	110, 682
MnlI	CCTC	4 cut(s)	236, 409, 801, 873
Mox20I	TGGCCA	3 cut(s)	5, 279, 843
MscI	TGGCCA	3 cut(s)	5, 279, 843
MslI	CAYNNNNRTG	1 cut(s)	161
Msp20I	TGGCCA	3 cut(s)	5, 279, 843
MspR9I	CCNGG	3 cut(s)	24, 114, 643
MunI	CAATTG	2 cut(s)	234, 660
Mva1269I	GAATGC	1 cut(s)	809
MvaI	CCWGG	3 cut(s)	24, 114, 643
MwoI	GCNNNNNNNGC	9 cut(s)	191, 194, 236, 326, 380, 415, 482, 569, 840
NcoI	CCATGG	1 cut(s)	344
NdeII	GATC	6 cut(s)	264, 386, 461, 480, 626, 859
NlaIII	CATG	8 cut(s)	160, 301, 348, 440, 499, 511, 634, 735
NlaIV	GGNNCC	7 cut(s)	357, 388, 445, 580, 628, 655, 718
NmuCI	GTSAC	3 cut(s)	169, 253, 310
NspI	RCATGY	2 cut(s)	160, 440
PagI	TCATGA	1 cut(s)	495
PaqCI	CACCTGC	1 cut(s)	554
PciI	ACATGT	2 cut(s)	156, 436
PciSI	GCTCTTC	1 cut(s)	824
PctI	GAATGC	1 cut(s)	809
PfeI	GAWTC	2 cut(s)	684, 869
PflMI	CCANNNNNTGG	1 cut(s)	23
PkrI	GCNGC	3 cut(s)	187, 196, 328
PpuMI	RGGWCCY	2 cut(s)	355, 653
PscI	ACATGT	2 cut(s)	156, 436
Psp5II	RGGWCCY	2 cut(s)	355, 653
Psp6I	CCWGG	3 cut(s)	22, 112, 641
PspFI	CCCAGC	2 cut(s)	637, 771
PspGI	CCWGG	3 cut(s)	22, 112, 641
PspN4I	GGNNCC	7 cut(s)	357, 388, 445, 580, 628, 655, 718
PspPI	GGNCC	5 cut(s)	355, 611, 653, 704, 735
PspPPI	RGGWCCY	2 cut(s)	355, 653
PstNI	CAGNNNCTG	1 cut(s)	23
PsuI	RGATCY	3 cut(s)	386, 626, 859
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	161
SapI	GCTCTTC	1 cut(s)	824
SatI	GCNGC	3 cut(s)	186, 195, 327
Sau3AI	GATC	6 cut(s)	264, 386, 461, 480, 626, 859
Sau96I	GGNCC	5 cut(s)	355, 611, 653, 704, 735
ScrFI	CCNGG	3 cut(s)	24, 114, 643
SduI	GDGCHC	1 cut(s)	295
SfaNI	GCATC	1 cut(s)	433
SfcI	CTRYAG	1 cut(s)	549
SinI	GGWCC	5 cut(s)	355, 611, 653, 704, 735
SmiMI	CAYNNNNRTG	1 cut(s)	161
Sse9I	AATT	3 cut(s)	234, 489, 660
SsiI	CCGC	4 cut(s)	137, 272, 582, 657
SspI	AATATT	1 cut(s)	104
SspMI	CTAG	2 cut(s)	317, 380
StyD4I	CCNGG	3 cut(s)	22, 112, 641
StyI	CCWWGG	1 cut(s)	344
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	2 cut(s)	155, 699
TaqI	TCGA	2 cut(s)	823, 867
TasI	AATT	3 cut(s)	234, 489, 660
TfiI	GAWTC	2 cut(s)	684, 869
TscAI	CASTG	4 cut(s)	60, 534, 714, 763
TseFI	GTSAC	3 cut(s)	169, 253, 310
TseI	GCWGC	3 cut(s)	185, 194, 326
Tsp45I	GTSAC	3 cut(s)	169, 253, 310
TspDTI	ATGAA	6 cut(s)	219, 314, 505, 647, 736, 842
TspRI	CASTG	4 cut(s)	60, 534, 714, 763
Van91I	CCANNNNNTGG	1 cut(s)	23
VpaK11BI	GGWCC	5 cut(s)	355, 611, 653, 704, 735
XceI	RCATGY	2 cut(s)	160, 440
XmiI	GTMKAC	1 cut(s)	693
XspI	CTAG	2 cut(s)	317, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.