Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002869

Physical Location & Seq

Genomic Coordinates Reverse (-)

5782998 .. 5784895

Gene Structure 1898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00083060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCCACGACAGAGTTAGTCTCAGTGGAAACCCCAATAGTTATAAAAGGTCCATTTTACCCACCTGGGTTTTTGAAAAAGGTGGTGGCAGAGATGATAGCTACCTTTCTGCTGGTGTTTGTAACATGTGGTTCAGCTGCTCTTTCAGCGAGTGATGAACGCAGAGTCTCAAAGCTTGGAGCTTCCATGACCGGAGGGCTTATAGTGACGGTGATGATCTACGCAGTTGGGCACATCTCTGGGGCACACATGAACCCGGCCGTCACTACAGCTTTTGCTGCCTTTAGACATTTTCCATGGAAACAGGTGCCAATTTATGCGGTAGCACAACTAACAGGATCAATATCTGCCTCATTTACTCTGTCTGCACTATTGCACCCTATTAAGCATGTGGGCACTACATCACCTTCTGGATCAGAGCTTCAAGCTCTAGTCACAGAGATAATCGTGACATTTTCTATGATGTTCATCACTTCAGCGGTCGCCACCGATACTAAAGCTATAGGAGAGCTAGCAGGTATAGCAGTTGGTTCTGCAGTATGCATAACATCCATCTTTGCTGGACCAATATCAGGTGGATCCATGAATCCAGCGAGGACAATAGGACCAGCATTTGCTAGTGCATATTACAATGGGATTTGGATCTACATGGTAGGACCAGTGATCGGAACACTACTAGGGGCATGGGCTTACAGCTTCATTCGGGTCAGTGACAAGCCGGTTCAGGCAATACCACGGCGTTCACTTTCACTCCAGCTTCGTCGAGTGAGCAATGTTAATGGTGGGCAGGCTGTTACCAGCTGCGAAGACCCTCTAGATTTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

275

Amino Acids

28.76

Weight (kDa)

9.03

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	23 - 231	5.5e-56	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48500 FvH4_6g48510 FvH4_6g48540 FvH4_6g48560 FvH4_6g48560 FvH4_6g48570 FvH4_6g48580
malus_domestica	MD09G1051500.v1.1 MD17G1041700.v1.1 MD17G1041900.v1.1
prunus_persica	Prupe.3G267200_v2.0.a1
pyrus_communis	pycom111g04280 pycom17g04630 pycom17g04640
rosa_chinensis	RchiOBHm_Chr2g0168391
rosa_laevigata	RLG00000021776 RLG00000021777
rosa_multiflora	Rmu_co8307587.1_g000001 Rmu_co8437903.1_g000001 Rmu_sc0003354.1_g000028 Rmu_sc0003354.1_g000030 Rmu_sc0006073.1_g000001 Rmu_sc0007031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083050 Rroxscaffold_2G00083060
rosa_rugosa	Rorug02G0533700 Rorug02G0533700
rosa_samantha	Rh2AG602800 Rh2AG602900 Rh2BG616100 Rh2BG616200 Rh2BG616300 Rh2BG616400 Rh2CG583900 Rh2CG584000 Rh2DG626500 Rh2DG626600
rosa_wichuraiana	Rw2G050020 Rw2G050030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	44
Acc36I	ACCTGC	1 cut(s)	506
AccB1I	GGYRCC	1 cut(s)	307
AciI	CCGC	2 cut(s)	320, 479
AclWI	GGATC	5 cut(s)	346, 421, 573, 586, 650
AcoI	YGGCCR	2 cut(s)	3, 258
AcuI	CTGAAG	1 cut(s)	459
AfiI	CCNNNNNNNGG	2 cut(s)	572, 665
AflIII	ACRYGT	1 cut(s)	125
AgsI	TTSAA	2 cut(s)	76, 425
AjnI	CCWGG	1 cut(s)	64
Alw26I	GTCTC	2 cut(s)	25, 172
AlwI	GGATC	5 cut(s)	346, 421, 573, 586, 650
AoxI	GGCC	2 cut(s)	3, 258
ApeKI	GCWGC	3 cut(s)	137, 278, 801
AspS9I	GGNCC	4 cut(s)	50, 563, 605, 656
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	2 cut(s)	223, 396
AsuNHI	GCTAGC	1 cut(s)	511
AvaII	GGWCC	4 cut(s)	50, 563, 605, 656
BaeGI	GKGCMC	3 cut(s)	234, 247, 398
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	578
BanI	GGYRCC	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	813
BbvI	GCAGC	3 cut(s)	124, 265, 788
BccI	CCATC	1 cut(s)	560
BceAI	ACGGC	2 cut(s)	245, 752
BciT130I	CCWGG	1 cut(s)	66
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	2 cut(s)	25, 172
BfaI	CTAG	5 cut(s)	431, 512, 618, 677, 815
BfmI	CTRYAG	3 cut(s)	267, 501, 534
BfuAI	ACCTGC	1 cut(s)	506
BisI	GCNGC	3 cut(s)	138, 279, 802
BlsI	GCNGC	3 cut(s)	139, 280, 803
Bme1390I	CCNGG	2 cut(s)	66, 257
Bme18I	GGWCC	4 cut(s)	50, 563, 605, 656
BmgT120I	GGNCC	4 cut(s)	50, 563, 605, 656
BmiI	GGNNCC	2 cut(s)	309, 580
BmrFI	CCNGG	2 cut(s)	66, 257
BmtI	GCTAGC	1 cut(s)	515
BpiI	GAAGAC	1 cut(s)	813
BplI	GAGNNNNNCTC	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	737
BpuMI	CCSGG	1 cut(s)	257
BsaBI	GATNNNNATC	3 cut(s)	343, 467, 641
BsaJI	CCNNGG	3 cut(s)	65, 296, 734
BsaWI	WCCGGW	1 cut(s)	191
BsaXI	ACNNNNNCTCC	2 cut(s)	735, 765
Bsc4I	CCNNNNNNNGG	2 cut(s)	572, 665
Bse118I	RCCGGY	1 cut(s)	718
Bse1I	ACTGG	1 cut(s)	659
Bse3DI	GCAATG	1 cut(s)	778
Bse8I	GATNNNNATC	3 cut(s)	343, 467, 641
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	3 cut(s)	65, 296, 734
BseGI	GGATG	1 cut(s)	548
BseJI	GATNNNNATC	3 cut(s)	343, 467, 641
BseLI	CCNNNNNNNGG	2 cut(s)	572, 665
BseMI	GCAATG	1 cut(s)	778
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	659
BseSI	GKGCMC	3 cut(s)	234, 247, 398
BseX3I	CGGCCG	1 cut(s)	258
BseXI	GCAGC	3 cut(s)	124, 265, 788
BsgI	GTGCAG	1 cut(s)	351
Bsh1285I	CGRYCG	2 cut(s)	261, 483
BshFI	GGCC	2 cut(s)	5, 260
BshNI	GGYRCC	1 cut(s)	307
BsiEI	CGRYCG	2 cut(s)	261, 483
BsiSI	CCGG	3 cut(s)	192, 257, 719
BslI	CCNNNNNNNGG	2 cut(s)	572, 665
BsmAI	GTCTC	2 cut(s)	25, 172
BsnI	GGCC	2 cut(s)	5, 260
Bsp1286I	GDGCHC	3 cut(s)	234, 247, 398
Bsp143I	GATC	6 cut(s)	216, 338, 413, 578, 642, 663
Bsp19I	CCATGG	1 cut(s)	296
BspACI	CCGC	2 cut(s)	320, 479
BspANI	GGCC	2 cut(s)	5, 260
BspCNI	CTCAG	1 cut(s)	35
BspLI	GGNNCC	2 cut(s)	309, 580
BspMAI	CTGCAG	1 cut(s)	538
BspMI	ACCTGC	1 cut(s)	506
BspOI	GCTAGC	1 cut(s)	515
BspPI	GGATC	5 cut(s)	346, 421, 573, 586, 650
BspT107I	GGYRCC	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	778
BsrFI	RCCGGY	1 cut(s)	718
BsrI	ACTGG	1 cut(s)	659
BssAI	RCCGGY	1 cut(s)	718
BssECI	CCNNGG	3 cut(s)	65, 296, 734
BssMI	GATC	6 cut(s)	216, 338, 413, 578, 642, 663
BssT1I	CCWWGG	1 cut(s)	296
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	211
BstC8I	GCNNGC	2 cut(s)	513, 789
BstDEI	CTNAG	1 cut(s)	22
BstDSI	CCRYGG	2 cut(s)	296, 734
BstF5I	GGATG	1 cut(s)	548
BstKTI	GATC	6 cut(s)	219, 341, 416, 581, 645, 666
BstMAI	GTCTC	2 cut(s)	25, 172
BstMBI	GATC	6 cut(s)	216, 338, 413, 578, 642, 663
BstMCI	CGRYCG	2 cut(s)	261, 483
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 278, 521
BstNI	CCWGG	1 cut(s)	66
BstNSI	RCATGY	2 cut(s)	129, 392
BstSCI	CCNGG	2 cut(s)	64, 255
BstSFI	CTRYAG	3 cut(s)	267, 501, 534
BstSLI	GKGCMC	3 cut(s)	234, 247, 398
BstV1I	GCAGC	3 cut(s)	124, 265, 788
BstV2I	GAAGAC	1 cut(s)	813
BstX2I	RGATCY	2 cut(s)	578, 642
BstYI	RGATCY	2 cut(s)	578, 642
BstZI	CGGCCG	1 cut(s)	258
BsuRI	GGCC	2 cut(s)	5, 260
BtgI	CCRYGG	2 cut(s)	296, 734
BtsCI	GGATG	1 cut(s)	548
BtsIMutI	CAGTG	3 cut(s)	30, 666, 715
BveI	ACCTGC	1 cut(s)	506
Cac8I	GCNNGC	2 cut(s)	513, 789
Cfr10I	RCCGGY	1 cut(s)	718
Cfr13I	GGNCC	4 cut(s)	50, 563, 605, 656
CviAII	CATG	8 cut(s)	126, 187, 250, 297, 389, 583, 649, 684
DdeI	CTNAG	1 cut(s)	22
DpnI	GATC	6 cut(s)	218, 340, 415, 580, 644, 665
DpnII	GATC	6 cut(s)	216, 338, 413, 578, 642, 663
EaeI	YGGCCR	2 cut(s)	3, 258
EagI	CGGCCG	1 cut(s)	258
EclXI	CGGCCG	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	296
Eco47I	GGWCC	4 cut(s)	50, 563, 605, 656
Eco52I	CGGCCG	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	459
EcoRII	CCWGG	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	296
EcoT22I	ATGCAT	1 cut(s)	545
ErhI	CCWWGG	1 cut(s)	296
FaeI	CATG	8 cut(s)	129, 190, 253, 300, 392, 586, 652, 687
FatI	CATG	8 cut(s)	125, 186, 249, 296, 388, 582, 648, 683
Fnu4HI	GCNGC	3 cut(s)	138, 279, 802
FokI	GGATG	1 cut(s)	535
Fsp4HI	GCNGC	3 cut(s)	138, 279, 802
FspBI	CTAG	5 cut(s)	431, 512, 618, 677, 815
GluI	GCNGC	3 cut(s)	138, 279, 802
GsuI	CTGGAG	1 cut(s)	737
HaeIII	GGCC	2 cut(s)	5, 260
HapII	CCGG	3 cut(s)	192, 257, 719
Hin1II	CATG	8 cut(s)	129, 190, 253, 300, 392, 586, 652, 687
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	2 cut(s)	165, 586
HpaII	CCGG	3 cut(s)	192, 257, 719
HphI	GGTGA	2 cut(s)	223, 396
Hpy166II	GTNNAC	1 cut(s)	743
Hpy188I	TCNGA	2 cut(s)	418, 668
Hpy188III	TCNNGA	3 cut(s)	411, 448, 815
Hpy8I	GTNNAC	1 cut(s)	743
Hpy99I	CGWCG	1 cut(s)	765
HpyAV	CCTTC	1 cut(s)	417
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4V	TGCA	5 cut(s)	368, 376, 536, 543, 623
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 278, 521
HpyF3I	CTNAG	1 cut(s)	22
Hsp92II	CATG	8 cut(s)	129, 190, 253, 300, 392, 586, 652, 687
Kzo9I	GATC	6 cut(s)	216, 338, 413, 578, 642, 663
LmnI	GCTCC	1 cut(s)	179
Lsp1109I	GCAGC	3 cut(s)	124, 265, 788
MaeI	CTAG	5 cut(s)	431, 512, 618, 677, 815
MaeIII	GTNAC	7 cut(s)	121, 205, 262, 433, 448, 710, 793
MalI	GATC	6 cut(s)	218, 340, 415, 580, 644, 665
MboI	GATC	6 cut(s)	216, 338, 413, 578, 642, 663
MboII	GAAGA	1 cut(s)	818
MflI	RGATCY	2 cut(s)	578, 642
MhlI	GDGCHC	3 cut(s)	234, 247, 398
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	312
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	174
MnlI	CCTC	4 cut(s)	188, 361, 588, 822
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	545
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	384, 777
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	137, 479, 801
MspI	CCGG	3 cut(s)	192, 257, 719
MspR9I	CCNGG	2 cut(s)	66, 257
MvaI	CCWGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	3 cut(s)	146, 278, 521
NciI	CCSGG	1 cut(s)	257
NcoI	CCATGG	1 cut(s)	296
NdeII	GATC	6 cut(s)	216, 338, 413, 578, 642, 663
NheI	GCTAGC	1 cut(s)	511
NlaIII	CATG	8 cut(s)	129, 190, 253, 300, 392, 586, 652, 687
NlaIV	GGNNCC	2 cut(s)	309, 580
NmuCI	GTSAC	5 cut(s)	205, 262, 433, 448, 710
NsiI	ATGCAT	1 cut(s)	545
NspI	RCATGY	2 cut(s)	129, 392
PciI	ACATGT	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	586
PkrI	GCNGC	3 cut(s)	139, 280, 803
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PscI	ACATGT	1 cut(s)	125
PsiI	TTATAA	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	2 cut(s)	309, 580
PspPI	GGNCC	4 cut(s)	50, 563, 605, 656
PstI	CTGCAG	1 cut(s)	538
PsuI	RGATCY	2 cut(s)	578, 642
PvuII	CAGCTG	2 cut(s)	137, 801
SaqAI	TTAA	2 cut(s)	384, 777
SatI	GCNGC	3 cut(s)	138, 279, 802
Sau3AI	GATC	6 cut(s)	216, 338, 413, 578, 642, 663
Sau96I	GGNCC	4 cut(s)	50, 563, 605, 656
SchI	GAGTC	1 cut(s)	174
ScrFI	CCNGG	2 cut(s)	66, 257
SduI	GDGCHC	3 cut(s)	234, 247, 398
SfcI	CTRYAG	3 cut(s)	267, 501, 534
SinI	GGWCC	4 cut(s)	50, 563, 605, 656
Sse9I	AATT	1 cut(s)	312
SsiI	CCGC	2 cut(s)	320, 479
SspMI	CTAG	5 cut(s)	431, 512, 618, 677, 815
StyD4I	CCNGG	2 cut(s)	64, 255
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	1 cut(s)	211
TaqI	TCGA	1 cut(s)	763
TasI	AATT	1 cut(s)	312
TfiI	GAWTC	1 cut(s)	586
Tru1I	TTAA	2 cut(s)	384, 777
Tru9I	TTAA	2 cut(s)	384, 777
TscAI	CASTG	3 cut(s)	30, 666, 715
TseFI	GTSAC	5 cut(s)	205, 262, 433, 448, 710
TseI	GCWGC	3 cut(s)	137, 278, 801
Tsp45I	GTSAC	5 cut(s)	205, 262, 433, 448, 710
TspDTI	ATGAA	5 cut(s)	171, 266, 457, 599, 688
TspRI	CASTG	3 cut(s)	30, 666, 715
VpaK11BI	GGWCC	4 cut(s)	50, 563, 605, 656
XbaI	TCTAGA	1 cut(s)	814
XceI	RCATGY	2 cut(s)	129, 392
XspI	CTAG	5 cut(s)	431, 512, 618, 677, 815
Zsp2I	ATGCAT	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.