Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003354.1

Orthogroup ID

OG0002869

Physical Location & Seq

Genomic Coordinates Forward (+)

109780 .. 111108

Gene Structure 1329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003354.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atgatagctacctttctgctggtgtttgtaacatgtggttcagctgctctttcagcgagtgatgaacgcaaagtctcaaagcttggagcttccatgaccggagggcttatagtgacggtgatgatctacgcagttgggcacatatctggggcacacatgaacccggccgtcactctagcttttgctgcctttagacattttccatggaaacaggtaaaggccatgcacatctggagtcggggccacgacacctacctgattggtgctcaagtgcatgaggtgccaatttatgcggtagcacaactaacaggatcaatatctgcctcatttactctgtctctactattgcaccctattaagcatgtgggcactacatcaccttctggatcagagcttcgagctgtagtcacagagataatcgtgacattttctatgatgttcatcacttcagcggtcgccaccgatactaaagctataggagagctagcaggtatagccgttgggtctgcggtatgcataacatccatctttgctggaccaatatcaggtggatctatgaatccagcaaggacaataggaccagcacttgctagttcatattacaatgggatttggatctacatggtaggaccagtgatcggaacactactaggggcatgggcttacagcttcattcgggtcagtgacaagccggttcaggcaataccacggcgttcactttcacaccagcttcgtcaagtgagcgatgttaatggtgggcaggctgttaccagctgcgaagaccctctagatttagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

266

Amino Acids

27.96

Weight (kDa)

8.81

Isoelectric Point (pI)

27.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48500 FvH4_6g48510 FvH4_6g48540 FvH4_6g48560 FvH4_6g48560 FvH4_6g48570 FvH4_6g48580
malus_domestica	MD09G1051500.v1.1 MD17G1041700.v1.1 MD17G1041900.v1.1
prunus_persica	Prupe.3G267200_v2.0.a1
pyrus_communis	pycom111g04280 pycom17g04630 pycom17g04640
rosa_chinensis	RchiOBHm_Chr2g0168391
rosa_laevigata	RLG00000021776 RLG00000021777
rosa_multiflora	Rmu_co8307587.1_g000001 Rmu_co8437903.1_g000001 Rmu_sc0003354.1_g000028 Rmu_sc0003354.1_g000030 Rmu_sc0006073.1_g000001 Rmu_sc0007031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083050 Rroxscaffold_2G00083060
rosa_rugosa	Rorug02G0533700 Rorug02G0533700
rosa_samantha	Rh2AG602800 Rh2AG602900 Rh2BG616100 Rh2BG616200 Rh2BG616300 Rh2BG616400 Rh2CG583900 Rh2CG584000 Rh2DG626500 Rh2DG626600
rosa_wichuraiana	Rw2G050020 Rw2G050030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	479
AccB1I	GGYRCC	1 cut(s)	280
AciI	CCGC	3 cut(s)	293, 452, 509
AclWI	GGATC	4 cut(s)	319, 394, 559, 623
AcoI	YGGCCR	1 cut(s)	165
AcuI	CTGAAG	1 cut(s)	432
AfiI	CCNNNNNNNGG	2 cut(s)	545, 638
AflIII	ACRYGT	1 cut(s)	32
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	2 cut(s)	79, 342
AlwI	GGATC	4 cut(s)	319, 394, 559, 623
AoxI	GGCC	3 cut(s)	165, 219, 241
ApeKI	GCWGC	3 cut(s)	44, 185, 774
AspS9I	GGNCC	4 cut(s)	241, 536, 578, 629
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	2 cut(s)	130, 369
AsuNHI	GCTAGC	1 cut(s)	484
AvaII	GGWCC	3 cut(s)	536, 578, 629
BaeGI	GKGCMC	3 cut(s)	141, 154, 371
BanI	GGYRCC	1 cut(s)	280
BbsI	GAAGAC	1 cut(s)	786
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	3 cut(s)	31, 172, 761
BccI	CCATC	1 cut(s)	533
BceAI	ACGGC	3 cut(s)	152, 482, 725
BcnI	CCSGG	1 cut(s)	164
BcoDI	GTCTC	2 cut(s)	79, 342
BfaI	CTAG	5 cut(s)	176, 485, 591, 650, 788
BfmI	CTRYAG	2 cut(s)	402, 474
BfuAI	ACCTGC	1 cut(s)	479
BisI	GCNGC	3 cut(s)	45, 186, 775
BlsI	GCNGC	3 cut(s)	46, 187, 776
Bme1390I	CCNGG	1 cut(s)	164
Bme18I	GGWCC	3 cut(s)	536, 578, 629
BmgT120I	GGNCC	4 cut(s)	241, 536, 578, 629
BmiI	GGNNCC	2 cut(s)	242, 282
BmrFI	CCNGG	1 cut(s)	164
BmtI	GCTAGC	1 cut(s)	488
BpiI	GAAGAC	1 cut(s)	786
BpmI	CTGGAG	1 cut(s)	253
BpuEI	CTTGAG	1 cut(s)	252
BpuMI	CCSGG	1 cut(s)	164
BsaBI	GATNNNNATC	3 cut(s)	316, 440, 614
BsaJI	CCNNGG	2 cut(s)	203, 707
BsaWI	WCCGGW	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	2 cut(s)	545, 638
Bse118I	RCCGGY	1 cut(s)	691
Bse1I	ACTGG	1 cut(s)	632
Bse8I	GATNNNNATC	3 cut(s)	316, 440, 614
BseDI	CCNNGG	2 cut(s)	203, 707
BseGI	GGATG	1 cut(s)	521
BseJI	GATNNNNATC	3 cut(s)	316, 440, 614
BseLI	CCNNNNNNNGG	2 cut(s)	545, 638
BseNI	ACTGG	1 cut(s)	632
BseSI	GKGCMC	3 cut(s)	141, 154, 371
BseX3I	CGGCCG	1 cut(s)	165
BseXI	GCAGC	3 cut(s)	31, 172, 761
Bsh1285I	CGRYCG	2 cut(s)	168, 456
BshFI	GGCC	3 cut(s)	167, 221, 243
BshNI	GGYRCC	1 cut(s)	280
BsiEI	CGRYCG	2 cut(s)	168, 456
BsiHKAI	GWGCWC	1 cut(s)	268
BsiSI	CCGG	3 cut(s)	99, 164, 692
BslI	CCNNNNNNNGG	2 cut(s)	545, 638
BsmAI	GTCTC	2 cut(s)	79, 342
BsnI	GGCC	3 cut(s)	167, 221, 243
Bsp1286I	GDGCHC	4 cut(s)	141, 154, 268, 371
Bsp143I	GATC	6 cut(s)	123, 311, 386, 551, 615, 636
Bsp19I	CCATGG	1 cut(s)	203
BspACI	CCGC	3 cut(s)	293, 452, 509
BspANI	GGCC	3 cut(s)	167, 221, 243
BspLI	GGNNCC	2 cut(s)	242, 282
BspMI	ACCTGC	1 cut(s)	479
BspOI	GCTAGC	1 cut(s)	488
BspPI	GGATC	4 cut(s)	319, 394, 559, 623
BspT107I	GGYRCC	1 cut(s)	280
BsrFI	RCCGGY	1 cut(s)	691
BsrI	ACTGG	1 cut(s)	632
BssAI	RCCGGY	1 cut(s)	691
BssECI	CCNNGG	2 cut(s)	203, 707
BssMI	GATC	6 cut(s)	123, 311, 386, 551, 615, 636
BssT1I	CCWWGG	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	118
BstAPI	GCANNNNNTGC	1 cut(s)	280
BstC8I	GCNNGC	2 cut(s)	486, 762
BstDSI	CCRYGG	2 cut(s)	203, 707
BstF5I	GGATG	1 cut(s)	521
BstKTI	GATC	6 cut(s)	126, 314, 389, 554, 618, 639
BstMAI	GTCTC	2 cut(s)	79, 342
BstMBI	GATC	6 cut(s)	123, 311, 386, 551, 615, 636
BstMCI	CGRYCG	2 cut(s)	168, 456
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 185, 280, 494
BstNSI	RCATGY	2 cut(s)	36, 365
BstSCI	CCNGG	1 cut(s)	162
BstSFI	CTRYAG	2 cut(s)	402, 474
BstSLI	GKGCMC	3 cut(s)	141, 154, 371
BstV1I	GCAGC	3 cut(s)	31, 172, 761
BstV2I	GAAGAC	1 cut(s)	786
BstX2I	RGATCY	2 cut(s)	551, 615
BstYI	RGATCY	2 cut(s)	551, 615
BstZI	CGGCCG	1 cut(s)	165
BsuRI	GGCC	3 cut(s)	167, 221, 243
BtgI	CCRYGG	2 cut(s)	203, 707
BtgZI	GCGATG	1 cut(s)	759
BtsCI	GGATG	1 cut(s)	521
BtsIMutI	CAGTG	2 cut(s)	639, 688
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	2 cut(s)	486, 762
Cfr10I	RCCGGY	1 cut(s)	691
Cfr13I	GGNCC	4 cut(s)	241, 536, 578, 629
CviAII	CATG	9 cut(s)	33, 94, 157, 204, 223, 275, 362, 622, 657
DpnI	GATC	6 cut(s)	125, 313, 388, 553, 617, 638
DpnII	GATC	6 cut(s)	123, 311, 386, 551, 615, 636
EaeI	YGGCCR	1 cut(s)	165
EagI	CGGCCG	1 cut(s)	165
EclXI	CGGCCG	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	203
Eco47I	GGWCC	3 cut(s)	536, 578, 629
Eco52I	CGGCCG	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	432
EcoT14I	CCWWGG	1 cut(s)	203
EcoT22I	ATGCAT	1 cut(s)	518
ErhI	CCWWGG	1 cut(s)	203
FaeI	CATG	9 cut(s)	36, 97, 160, 207, 226, 278, 365, 625, 660
FatI	CATG	9 cut(s)	32, 93, 156, 203, 222, 274, 361, 621, 656
Fnu4HI	GCNGC	3 cut(s)	45, 186, 775
FokI	GGATG	1 cut(s)	508
Fsp4HI	GCNGC	3 cut(s)	45, 186, 775
FspBI	CTAG	5 cut(s)	176, 485, 591, 650, 788
GluI	GCNGC	3 cut(s)	45, 186, 775
GsuI	CTGGAG	1 cut(s)	253
HaeIII	GGCC	3 cut(s)	167, 221, 243
HapII	CCGG	3 cut(s)	99, 164, 692
Hin1II	CATG	9 cut(s)	36, 97, 160, 207, 226, 278, 365, 625, 660
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	2 cut(s)	235, 559
HpaII	CCGG	3 cut(s)	99, 164, 692
HphI	GGTGA	2 cut(s)	130, 369
Hpy166II	GTNNAC	1 cut(s)	716
Hpy188I	TCNGA	2 cut(s)	391, 641
Hpy188III	TCNNGA	4 cut(s)	232, 384, 421, 788
Hpy8I	GTNNAC	1 cut(s)	716
HpyAV	CCTTC	1 cut(s)	390
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	4 cut(s)	226, 274, 349, 516
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 185, 280, 494
Hsp92II	CATG	9 cut(s)	36, 97, 160, 207, 226, 278, 365, 625, 660
Kzo9I	GATC	6 cut(s)	123, 311, 386, 551, 615, 636
LmnI	GCTCC	1 cut(s)	86
Lsp1109I	GCAGC	3 cut(s)	31, 172, 761
MaeI	CTAG	5 cut(s)	176, 485, 591, 650, 788
MaeIII	GTNAC	7 cut(s)	28, 112, 169, 406, 421, 683, 766
MalI	GATC	6 cut(s)	125, 313, 388, 553, 617, 638
MboI	GATC	6 cut(s)	123, 311, 386, 551, 615, 636
MboII	GAAGA	1 cut(s)	791
MflI	RGATCY	2 cut(s)	551, 615
MhlI	GDGCHC	4 cut(s)	141, 154, 268, 371
MluCI	AATT	1 cut(s)	285
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	4 cut(s)	95, 271, 334, 795
Mph1103I	ATGCAT	1 cut(s)	518
MseI	TTAA	2 cut(s)	357, 750
MspA1I	CMGCKG	3 cut(s)	44, 452, 774
MspI	CCGG	3 cut(s)	99, 164, 692
MspR9I	CCNGG	1 cut(s)	164
MwoI	GCNNNNNNNGC	4 cut(s)	53, 185, 280, 494
NciI	CCSGG	1 cut(s)	164
NcoI	CCATGG	1 cut(s)	203
NdeII	GATC	6 cut(s)	123, 311, 386, 551, 615, 636
NheI	GCTAGC	1 cut(s)	484
NlaIII	CATG	9 cut(s)	36, 97, 160, 207, 226, 278, 365, 625, 660
NlaIV	GGNNCC	2 cut(s)	242, 282
NmuCI	GTSAC	5 cut(s)	112, 169, 406, 421, 683
NsiI	ATGCAT	1 cut(s)	518
NspI	RCATGY	2 cut(s)	36, 365
PciI	ACATGT	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	559
PkrI	GCNGC	3 cut(s)	46, 187, 776
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
PscI	ACATGT	1 cut(s)	32
PspN4I	GGNNCC	2 cut(s)	242, 282
PspPI	GGNCC	4 cut(s)	241, 536, 578, 629
PsuI	RGATCY	2 cut(s)	551, 615
PvuII	CAGCTG	2 cut(s)	44, 774
SaqAI	TTAA	2 cut(s)	357, 750
SatI	GCNGC	3 cut(s)	45, 186, 775
Sau3AI	GATC	6 cut(s)	123, 311, 386, 551, 615, 636
Sau96I	GGNCC	4 cut(s)	241, 536, 578, 629
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	164
SduI	GDGCHC	4 cut(s)	141, 154, 268, 371
SfcI	CTRYAG	2 cut(s)	402, 474
SinI	GGWCC	3 cut(s)	536, 578, 629
SmlI	CTYRAG	1 cut(s)	267
SmoI	CTYRAG	1 cut(s)	267
Sse9I	AATT	1 cut(s)	285
SsiI	CCGC	3 cut(s)	293, 452, 509
SspMI	CTAG	5 cut(s)	176, 485, 591, 650, 788
StyD4I	CCNGG	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	203
TaaI	ACNGT	1 cut(s)	118
TaqI	TCGA	1 cut(s)	397
TasI	AATT	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	559
Tru1I	TTAA	2 cut(s)	357, 750
Tru9I	TTAA	2 cut(s)	357, 750
TscAI	CASTG	2 cut(s)	639, 688
TseFI	GTSAC	5 cut(s)	112, 169, 406, 421, 683
TseI	GCWGC	3 cut(s)	44, 185, 774
Tsp45I	GTSAC	5 cut(s)	112, 169, 406, 421, 683
TspDTI	ATGAA	6 cut(s)	78, 173, 430, 572, 585, 661
TspRI	CASTG	2 cut(s)	639, 688
VpaK11BI	GGWCC	3 cut(s)	536, 578, 629
XbaI	TCTAGA	1 cut(s)	787
XceI	RCATGY	2 cut(s)	36, 365
XspI	CTAG	5 cut(s)	176, 485, 591, 650, 788
Zsp2I	ATGCAT	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.