Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002869

Physical Location & Seq

Genomic Coordinates Reverse (-)

3201697 .. 3202394

Gene Structure 698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g04640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGACCTTTCTTTTCAGGTCCCAATTTATGCAGTAGCTCAAATAGCAGGATCAATATCTGCCTCGTTTACCCTGTATGTACTGTTGCACCCAATTAAACAACTTGGCACCGCATCACCTTCTGCACCAGAGACCCAAGCTTTGATTGCAGAGATAATCATGACATTTTCCATGGTGTTCATAGCCTCCGCCGTCGCAACTGATACCAAAGTAGGAGAACTAGCAGGCATCGCAGTTGGCTCCGCGGTTTGCATAACTTCAATCTTTGCCGGACTAGACAAACATGTCGTGCATATATTTAAGCAAGTGAAACAGCTAACATGGGTCTACGTCGTTGGACCAGTGATAGGAGCCCTACTTGGCTCATGGTCCTACAGCTTCATTCGGGTCAGCGATAACCCCATCCAGGCAGTATCACCACCCTCATTCGCATTCAAGCTTCGTCGAATCAAGACCGACAGCAACAGACAACTTACCTTCAGAGACCCTCTGGATTCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

168

Amino Acids

17.94

Weight (kDa)

8.79

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48500 FvH4_6g48510 FvH4_6g48540 FvH4_6g48560 FvH4_6g48560 FvH4_6g48570 FvH4_6g48580
malus_domestica	MD09G1051500.v1.1 MD17G1041700.v1.1 MD17G1041900.v1.1
prunus_persica	Prupe.3G267200_v2.0.a1
pyrus_communis	pycom111g04280 pycom17g04630 pycom17g04640
rosa_chinensis	RchiOBHm_Chr2g0168391
rosa_laevigata	RLG00000021776 RLG00000021777
rosa_multiflora	Rmu_co8307587.1_g000001 Rmu_co8437903.1_g000001 Rmu_sc0003354.1_g000028 Rmu_sc0003354.1_g000030 Rmu_sc0006073.1_g000001 Rmu_sc0007031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083050 Rroxscaffold_2G00083060
rosa_rugosa	Rorug02G0533700 Rorug02G0533700
rosa_samantha	Rh2AG602800 Rh2AG602900 Rh2BG616100 Rh2BG616200 Rh2BG616300 Rh2BG616400 Rh2CG583900 Rh2CG584000 Rh2DG626500 Rh2DG626600
rosa_wichuraiana	Rw2G050020 Rw2G050030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	284
AccB1I	GGYRCC	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	327
AccII	CGCG	1 cut(s)	245
AciI	CCGC	4 cut(s)	111, 189, 243, 245
AclWI	GGATC	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	463
AfaI	GTAC	1 cut(s)	81
AfiI	CCNNNNNNNGG	2 cut(s)	347, 406
AflIII	ACRYGT	1 cut(s)	283
AgsI	TTSAA	2 cut(s)	261, 436
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	6 cut(s)	38, 140, 316, 378, 439, 500
AluI	AGCT	6 cut(s)	38, 140, 316, 378, 439, 500
Alw26I	GTCTC	2 cut(s)	125, 477
AlwI	GGATC	1 cut(s)	58
ArsI	GACNNNNNNTTYG	2 cut(s)	124, 156
AspS9I	GGNCC	4 cut(s)	4, 19, 338, 369
AsuHPI	GGTGA	2 cut(s)	108, 408
AvaII	GGWCC	4 cut(s)	4, 19, 338, 369
BaeI	ACNNNNGTAYC	2 cut(s)	195, 228
BanI	GGYRCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	355
BccI	CCATC	1 cut(s)	410
BceAI	ACGGC	1 cut(s)	176
BciT130I	CCWGG	1 cut(s)	407
BcoDI	GTCTC	2 cut(s)	125, 477
BfaI	CTAG	2 cut(s)	221, 275
BfmI	CTRYAG	1 cut(s)	373
Bme1390I	CCNGG	1 cut(s)	407
Bme18I	GGWCC	4 cut(s)	4, 19, 338, 369
BmgT120I	GGNCC	4 cut(s)	4, 19, 338, 369
BmiI	GGNNCC	4 cut(s)	21, 109, 241, 352
BmrFI	CCNGG	1 cut(s)	407
BmsI	GCATC	2 cut(s)	122, 237
BsaBI	GATNNNNATC	1 cut(s)	55
BsaI	GGTCTC	2 cut(s)	125, 477
BsaJI	CCNNGG	2 cut(s)	171, 243
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 406
Bse1I	ACTGG	1 cut(s)	341
Bse8I	GATNNNNATC	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	2 cut(s)	171, 243
BseGI	GGATG	1 cut(s)	402
BseJI	GATNNNNATC	1 cut(s)	55
BseLI	CCNNNNNNNGG	2 cut(s)	347, 406
BseNI	ACTGG	1 cut(s)	341
BsgI	GTGCAG	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	245
BshNI	GGYRCC	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	270
BslFI	GGGAC	1 cut(s)	5
BslI	CCNNNNNNNGG	2 cut(s)	347, 406
BsmAI	GTCTC	2 cut(s)	125, 477
BsmFI	GGGAC	1 cut(s)	5
BsmI	GAATGC	1 cut(s)	431
Bso31I	GGTCTC	2 cut(s)	125, 477
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	1 cut(s)	50
Bsp19I	CCATGG	1 cut(s)	171
BspACI	CCGC	4 cut(s)	111, 189, 243, 245
BspFNI	CGCG	1 cut(s)	245
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	4 cut(s)	21, 109, 241, 352
BspPI	GGATC	1 cut(s)	58
BspT107I	GGYRCC	1 cut(s)	107
BspTNI	GGTCTC	2 cut(s)	125, 477
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	2 cut(s)	171, 243
BssMI	GATC	1 cut(s)	50
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	226
BstDSI	CCRYGG	2 cut(s)	171, 243
BstF5I	GGATG	1 cut(s)	402
BstFNI	CGCG	1 cut(s)	245
BstKTI	GATC	1 cut(s)	53
BstMAI	GTCTC	2 cut(s)	125, 477
BstMBI	GATC	1 cut(s)	50
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 146, 230
BstNI	CCWGG	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	405
BstSFI	CTRYAG	1 cut(s)	373
BstUI	CGCG	1 cut(s)	245
BtgI	CCRYGG	2 cut(s)	171, 243
BtgZI	GCGATG	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	402
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	1 cut(s)	226
CciI	TCATGA	1 cut(s)	159
Cfr13I	GGNCC	4 cut(s)	4, 19, 338, 369
Cfr42I	CCGCGG	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	80
CviAII	CATG	5 cut(s)	160, 172, 284, 321, 366
CviQI	GTAC	1 cut(s)	80
DpnI	GATC	1 cut(s)	52
DpnII	GATC	1 cut(s)	50
DrdI	GACNNNNNNGTC	1 cut(s)	284
DseDI	GACNNNNNNGTC	1 cut(s)	284
EciI	GGCGGA	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	355
Eco31I	GGTCTC	2 cut(s)	125, 477
Eco47I	GGWCC	4 cut(s)	4, 19, 338, 369
Eco57I	CTGAAG	1 cut(s)	463
EcoO109I	RGGNCCY	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	405
EcoT14I	CCWWGG	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	5 cut(s)	163, 175, 287, 324, 369
FaqI	GGGAC	1 cut(s)	5
FatI	CATG	5 cut(s)	159, 171, 283, 320, 365
FblI	GTMKAC	1 cut(s)	327
FokI	GGATG	1 cut(s)	389
FriOI	GRGCYC	1 cut(s)	355
FspBI	CTAG	2 cut(s)	221, 275
HapII	CCGG	1 cut(s)	270
Hin1II	CATG	5 cut(s)	163, 175, 287, 324, 369
HindIII	AAGCTT	2 cut(s)	138, 437
HinfI	GANTC	2 cut(s)	447, 494
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	2 cut(s)	108, 408
Hpy166II	GTNNAC	2 cut(s)	69, 328
Hpy188I	TCNGA	1 cut(s)	482
Hpy188III	TCNNGA	3 cut(s)	160, 451, 491
Hpy8I	GTNNAC	2 cut(s)	69, 328
Hpy99I	CGWCG	3 cut(s)	197, 335, 447
HpyAV	CCTTC	2 cut(s)	129, 487
HpyCH4III	ACNGT	1 cut(s)	84
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	6 cut(s)	32, 88, 125, 149, 252, 292
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 146, 230
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	5 cut(s)	163, 175, 287, 324, 369
KspI	CCGCGG	1 cut(s)	246
Kzo9I	GATC	1 cut(s)	50
LmnI	GCTCC	2 cut(s)	245, 350
LweI	GCATC	2 cut(s)	122, 237
MaeI	CTAG	2 cut(s)	221, 275
MaeII	ACGT	1 cut(s)	330
MalI	GATC	1 cut(s)	52
MboI	GATC	1 cut(s)	50
MhlI	GDGCHC	1 cut(s)	355
MluCI	AATT	2 cut(s)	24, 93
MmeI	TCCRAC	1 cut(s)	316
MnlI	CCTC	4 cut(s)	73, 196, 433, 498
MseI	TTAA	2 cut(s)	96, 300
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	1 cut(s)	407
Mva1269I	GAATGC	1 cut(s)	431
MvaI	CCWGG	1 cut(s)	407
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	3 cut(s)	44, 146, 230
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	1 cut(s)	50
NlaIII	CATG	5 cut(s)	163, 175, 287, 324, 369
NlaIV	GGNNCC	4 cut(s)	21, 109, 241, 352
NspI	RCATGY	1 cut(s)	287
PagI	TCATGA	1 cut(s)	159
PciI	ACATGT	1 cut(s)	283
PctI	GAATGC	1 cut(s)	431
PfeI	GAWTC	2 cut(s)	447, 494
PpuMI	RGGWCCY	1 cut(s)	19
PscI	ACATGT	1 cut(s)	283
Psp5II	RGGWCCY	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	4 cut(s)	21, 109, 241, 352
PspPI	GGNCC	4 cut(s)	4, 19, 338, 369
PspPPI	RGGWCCY	1 cut(s)	19
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SacII	CCGCGG	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	96, 300
Sau3AI	GATC	1 cut(s)	50
Sau96I	GGNCC	4 cut(s)	4, 19, 338, 369
ScrFI	CCNGG	1 cut(s)	407
SduI	GDGCHC	1 cut(s)	355
SfaNI	GCATC	2 cut(s)	122, 237
SfcI	CTRYAG	1 cut(s)	373
Sfr303I	CCGCGG	1 cut(s)	246
SgrBI	CCGCGG	1 cut(s)	246
SinI	GGWCC	4 cut(s)	4, 19, 338, 369
Sse9I	AATT	2 cut(s)	24, 93
SsiI	CCGC	4 cut(s)	111, 189, 243, 245
SspMI	CTAG	2 cut(s)	221, 275
StyD4I	CCNGG	1 cut(s)	405
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	84
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	1 cut(s)	445
TaqII	GACCGA	1 cut(s)	470
TasI	AATT	2 cut(s)	24, 93
TatI	WGTACW	1 cut(s)	79
TfiI	GAWTC	2 cut(s)	447, 494
Tru1I	TTAA	2 cut(s)	96, 300
Tru9I	TTAA	2 cut(s)	96, 300
TscAI	CASTG	1 cut(s)	348
TspDTI	ATGAA	2 cut(s)	169, 370
TspRI	CASTG	1 cut(s)	348
VpaK11BI	GGWCC	4 cut(s)	4, 19, 338, 369
XceI	RCATGY	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	327
XspI	CTAG	2 cut(s)	221, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.