Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002869

Physical Location & Seq

Genomic Coordinates Forward (+)

83084678 .. 83086395

Gene Structure 1718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG602800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCCCCGACAGAGTTAGTCTCAGTGGAAACCCCAATAGTTGGAAAAGGTCCATTTTACCCACCTGGGTTTTTGAAAAAGGTGGTGGCAGAGATGATAGCTACCTTTCTGCTGGTGTTTGTAACATGTGGTTCAGCTGCTCTTTCAGCGAGTGATGAACGCAAAGTCTCAAAGCTTGGAGCTTCCATGACCGGAGGGCTTATAGTGACGGTGATGATCTACGCAGTTGGGCACATATCTGGGGCACACATGAACCCGGCCGTCACTCTAGCTTTTGCTGCCTTCAGACATTTTCCATGGAAACAGGTGCCAATTTATGCGGTAGCACAACTAACAGGATCAATATCTGCCTCATTTACTCTGTCTATACTATTGCACCCTATTAAGCATGTGGGCACTACATCACCTTCTGGATCAGAGCTTCAAGCTGTAGTCACAGAGATAATCGTGACATTTTCTATGATGTTCATCACTTCAGCGGTCGCCACCGATACTAAAGCTAGGTTTGGAGTGAATATGCTCAGACCAATATCAGGTGGATCTATGAATCCAGCAAGGACAATAGGACCAGCACTTGCTAGTGCATATTACAATGGGATTTGGATCTACATGGTAGGACCAGTGATCGGAACACTACTAGGGGCATGGGCTTACAGCTTCATTCGGGTCAGTGACAAGCCGGTTCAGGCAATACCACGGCGTTCACTTTCACACCAGCTTCGTCAAGTGAGCGATGTTAATGGTGGGCAGGCTGTTACAAGCTGCGAAGACCCTCTAGATTTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

262

Amino Acids

27.72

Weight (kDa)

9.3

Isoelectric Point (pI)

30.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	23 - 218	3.9e-45	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48500 FvH4_6g48510 FvH4_6g48540 FvH4_6g48560 FvH4_6g48560 FvH4_6g48570 FvH4_6g48580
malus_domestica	MD09G1051500.v1.1 MD17G1041700.v1.1 MD17G1041900.v1.1
prunus_persica	Prupe.3G267200_v2.0.a1
pyrus_communis	pycom111g04280 pycom17g04630 pycom17g04640
rosa_chinensis	RchiOBHm_Chr2g0168391
rosa_laevigata	RLG00000021776 RLG00000021777
rosa_multiflora	Rmu_co8307587.1_g000001 Rmu_co8437903.1_g000001 Rmu_sc0003354.1_g000028 Rmu_sc0003354.1_g000030 Rmu_sc0006073.1_g000001 Rmu_sc0007031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083050 Rroxscaffold_2G00083060
rosa_rugosa	Rorug02G0533700 Rorug02G0533700
rosa_samantha	Rh2AG602800 Rh2AG602900 Rh2BG616100 Rh2BG616200 Rh2BG616300 Rh2BG616400 Rh2CG583900 Rh2CG584000 Rh2DG626500 Rh2DG626600
rosa_wichuraiana	Rw2G050020 Rw2G050030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	307
AccB7I	CCANNNNNTGG	1 cut(s)	41
AciI	CCGC	2 cut(s)	320, 479
AclWI	GGATC	4 cut(s)	346, 421, 547, 611
AcoI	YGGCCR	1 cut(s)	258
AcuI	CTGAAG	2 cut(s)	268, 459
AfiI	CCNNNNNNNGG	3 cut(s)	41, 533, 626
AflIII	ACRYGT	1 cut(s)	125
AgsI	TTSAA	2 cut(s)	76, 425
AjnI	CCWGG	1 cut(s)	64
Alw26I	GTCTC	2 cut(s)	25, 172
AlwI	GGATC	4 cut(s)	346, 421, 547, 611
AoxI	GGCC	2 cut(s)	3, 258
ApeKI	GCWGC	3 cut(s)	137, 278, 762
AspS9I	GGNCC	4 cut(s)	4, 50, 566, 617
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	2 cut(s)	223, 396
AvaII	GGWCC	3 cut(s)	50, 566, 617
BaeGI	GKGCMC	3 cut(s)	234, 247, 398
BanI	GGYRCC	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	774
BbvI	GCAGC	3 cut(s)	124, 265, 749
BceAI	ACGGC	2 cut(s)	245, 713
BciT130I	CCWGG	1 cut(s)	66
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	2 cut(s)	25, 172
BfaI	CTAG	5 cut(s)	269, 501, 579, 638, 776
BfmI	CTRYAG	1 cut(s)	429
BisI	GCNGC	3 cut(s)	138, 279, 763
BlsI	GCNGC	3 cut(s)	139, 280, 764
Bme1390I	CCNGG	2 cut(s)	66, 257
Bme18I	GGWCC	3 cut(s)	50, 566, 617
BmgT120I	GGNCC	4 cut(s)	4, 50, 566, 617
BmiI	GGNNCC	2 cut(s)	6, 309
BmrFI	CCNGG	2 cut(s)	66, 257
BpiI	GAAGAC	1 cut(s)	774
BplI	GAGNNNNNCTC	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	257
BsaBI	GATNNNNATC	3 cut(s)	343, 467, 602
BsaJI	CCNNGG	3 cut(s)	65, 296, 695
BsaWI	WCCGGW	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 533, 626
Bse118I	RCCGGY	1 cut(s)	679
Bse1I	ACTGG	1 cut(s)	620
Bse8I	GATNNNNATC	3 cut(s)	343, 467, 602
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	3 cut(s)	65, 296, 695
BseJI	GATNNNNATC	3 cut(s)	343, 467, 602
BseLI	CCNNNNNNNGG	3 cut(s)	41, 533, 626
BseMII	CTCAG	2 cut(s)	36, 535
BseNI	ACTGG	1 cut(s)	620
BseSI	GKGCMC	3 cut(s)	234, 247, 398
BseX3I	CGGCCG	1 cut(s)	258
BseXI	GCAGC	3 cut(s)	124, 265, 749
Bsh1285I	CGRYCG	2 cut(s)	261, 483
BshFI	GGCC	2 cut(s)	5, 260
BshNI	GGYRCC	1 cut(s)	307
BsiEI	CGRYCG	2 cut(s)	261, 483
BsiSI	CCGG	3 cut(s)	192, 257, 680
BslI	CCNNNNNNNGG	3 cut(s)	41, 533, 626
BsmAI	GTCTC	2 cut(s)	25, 172
BsnI	GGCC	2 cut(s)	5, 260
Bsp1286I	GDGCHC	3 cut(s)	234, 247, 398
Bsp143I	GATC	6 cut(s)	216, 338, 413, 539, 603, 624
Bsp19I	CCATGG	1 cut(s)	296
BspACI	CCGC	2 cut(s)	320, 479
BspANI	GGCC	2 cut(s)	5, 260
BspCNI	CTCAG	2 cut(s)	35, 534
BspLI	GGNNCC	2 cut(s)	6, 309
BspPI	GGATC	4 cut(s)	346, 421, 547, 611
BspT107I	GGYRCC	1 cut(s)	307
BsrFI	RCCGGY	1 cut(s)	679
BsrI	ACTGG	1 cut(s)	620
BssAI	RCCGGY	1 cut(s)	679
BssECI	CCNNGG	3 cut(s)	65, 296, 695
BssMI	GATC	6 cut(s)	216, 338, 413, 539, 603, 624
BssT1I	CCWWGG	1 cut(s)	296
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	750
BstDEI	CTNAG	2 cut(s)	22, 521
BstDSI	CCRYGG	2 cut(s)	296, 695
BstKTI	GATC	6 cut(s)	219, 341, 416, 542, 606, 627
BstMAI	GTCTC	2 cut(s)	25, 172
BstMBI	GATC	6 cut(s)	216, 338, 413, 539, 603, 624
BstMCI	CGRYCG	2 cut(s)	261, 483
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 278
BstNI	CCWGG	1 cut(s)	66
BstNSI	RCATGY	2 cut(s)	129, 392
BstSCI	CCNGG	2 cut(s)	64, 255
BstSFI	CTRYAG	1 cut(s)	429
BstSLI	GKGCMC	3 cut(s)	234, 247, 398
BstV1I	GCAGC	3 cut(s)	124, 265, 749
BstV2I	GAAGAC	1 cut(s)	774
BstX2I	RGATCY	2 cut(s)	539, 603
BstYI	RGATCY	2 cut(s)	539, 603
BstZI	CGGCCG	1 cut(s)	258
BsuRI	GGCC	2 cut(s)	5, 260
BtgI	CCRYGG	2 cut(s)	296, 695
BtgZI	GCGATG	1 cut(s)	747
BtsIMutI	CAGTG	3 cut(s)	30, 627, 676
Cac8I	GCNNGC	1 cut(s)	750
Cfr10I	RCCGGY	1 cut(s)	679
Cfr13I	GGNCC	4 cut(s)	4, 50, 566, 617
CviAII	CATG	7 cut(s)	126, 187, 250, 297, 389, 610, 645
DdeI	CTNAG	2 cut(s)	22, 521
DpnI	GATC	6 cut(s)	218, 340, 415, 541, 605, 626
DpnII	GATC	6 cut(s)	216, 338, 413, 539, 603, 624
EaeI	YGGCCR	1 cut(s)	258
EagI	CGGCCG	1 cut(s)	258
EclXI	CGGCCG	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	296
Eco47I	GGWCC	3 cut(s)	50, 566, 617
Eco52I	CGGCCG	1 cut(s)	258
Eco57I	CTGAAG	2 cut(s)	268, 459
EcoRII	CCWGG	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	296
FaeI	CATG	7 cut(s)	129, 190, 253, 300, 392, 613, 648
FatI	CATG	7 cut(s)	125, 186, 249, 296, 388, 609, 644
Fnu4HI	GCNGC	3 cut(s)	138, 279, 763
Fsp4HI	GCNGC	3 cut(s)	138, 279, 763
FspBI	CTAG	5 cut(s)	269, 501, 579, 638, 776
GluI	GCNGC	3 cut(s)	138, 279, 763
HaeIII	GGCC	2 cut(s)	5, 260
HapII	CCGG	3 cut(s)	192, 257, 680
Hin1II	CATG	7 cut(s)	129, 190, 253, 300, 392, 613, 648
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	1 cut(s)	547
HpaII	CCGG	3 cut(s)	192, 257, 680
HphI	GGTGA	2 cut(s)	223, 396
Hpy166II	GTNNAC	1 cut(s)	704
Hpy188I	TCNGA	4 cut(s)	287, 418, 524, 629
Hpy188III	TCNNGA	3 cut(s)	411, 448, 776
Hpy8I	GTNNAC	1 cut(s)	704
HpyAV	CCTTC	2 cut(s)	292, 417
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4V	TGCA	2 cut(s)	376, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 278
HpyF3I	CTNAG	2 cut(s)	22, 521
Hsp92II	CATG	7 cut(s)	129, 190, 253, 300, 392, 613, 648
Kzo9I	GATC	6 cut(s)	216, 338, 413, 539, 603, 624
LmnI	GCTCC	1 cut(s)	179
Lsp1109I	GCAGC	3 cut(s)	124, 265, 749
MaeI	CTAG	5 cut(s)	269, 501, 579, 638, 776
MaeIII	GTNAC	7 cut(s)	121, 205, 262, 433, 448, 671, 754
MalI	GATC	6 cut(s)	218, 340, 415, 541, 605, 626
MboI	GATC	6 cut(s)	216, 338, 413, 539, 603, 624
MboII	GAAGA	1 cut(s)	779
MflI	RGATCY	2 cut(s)	539, 603
MhlI	GDGCHC	3 cut(s)	234, 247, 398
MluCI	AATT	1 cut(s)	312
MmeI	TCCRAC	1 cut(s)	22
MnlI	CCTC	3 cut(s)	188, 361, 783
MseI	TTAA	2 cut(s)	384, 738
MspA1I	CMGCKG	2 cut(s)	137, 479
MspI	CCGG	3 cut(s)	192, 257, 680
MspR9I	CCNGG	2 cut(s)	66, 257
MvaI	CCWGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	2 cut(s)	146, 278
NciI	CCSGG	1 cut(s)	257
NcoI	CCATGG	1 cut(s)	296
NdeII	GATC	6 cut(s)	216, 338, 413, 539, 603, 624
NlaIII	CATG	7 cut(s)	129, 190, 253, 300, 392, 613, 648
NlaIV	GGNNCC	2 cut(s)	6, 309
NmuCI	GTSAC	5 cut(s)	205, 262, 433, 448, 671
NspI	RCATGY	2 cut(s)	129, 392
PciI	ACATGT	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	547
PflMI	CCANNNNNTGG	1 cut(s)	41
PkrI	GCNGC	3 cut(s)	139, 280, 764
PscI	ACATGT	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	2 cut(s)	6, 309
PspPI	GGNCC	4 cut(s)	4, 50, 566, 617
PsuI	RGATCY	2 cut(s)	539, 603
PvuII	CAGCTG	1 cut(s)	137
SaqAI	TTAA	2 cut(s)	384, 738
SatI	GCNGC	3 cut(s)	138, 279, 763
Sau3AI	GATC	6 cut(s)	216, 338, 413, 539, 603, 624
Sau96I	GGNCC	4 cut(s)	4, 50, 566, 617
ScrFI	CCNGG	2 cut(s)	66, 257
SduI	GDGCHC	3 cut(s)	234, 247, 398
SfcI	CTRYAG	1 cut(s)	429
SinI	GGWCC	3 cut(s)	50, 566, 617
Sse9I	AATT	1 cut(s)	312
SsiI	CCGC	2 cut(s)	320, 479
SspMI	CTAG	5 cut(s)	269, 501, 579, 638, 776
StyD4I	CCNGG	2 cut(s)	64, 255
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	1 cut(s)	211
TasI	AATT	1 cut(s)	312
TfiI	GAWTC	1 cut(s)	547
Tru1I	TTAA	2 cut(s)	384, 738
Tru9I	TTAA	2 cut(s)	384, 738
TscAI	CASTG	3 cut(s)	30, 627, 676
TseFI	GTSAC	5 cut(s)	205, 262, 433, 448, 671
TseI	GCWGC	3 cut(s)	137, 278, 762
Tsp45I	GTSAC	5 cut(s)	205, 262, 433, 448, 671
TspDTI	ATGAA	5 cut(s)	171, 266, 457, 560, 649
TspRI	CASTG	3 cut(s)	30, 627, 676
Van91I	CCANNNNNTGG	1 cut(s)	41
VpaK11BI	GGWCC	3 cut(s)	50, 566, 617
XbaI	TCTAGA	1 cut(s)	775
XceI	RCATGY	2 cut(s)	129, 392
XspI	CTAG	5 cut(s)	269, 501, 579, 638, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.