Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8307587.1

Orthogroup ID

OG0002869

Physical Location & Seq

Genomic Coordinates Forward (+)

409 .. 681

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8307587.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atgctcagaccaatatcaggtggatctatgaatccagcaaggacaataggaccagcacttgctagttcatattacaatgggatttggatctacatggtaggaccagtgatcggaacactactaggggcatgggcttacagcttcattcgggtcagtgacaagccggttcaggcaataccacggcgttcactttcacaccagcttcgtcaagtgagcgatgttaatggtgggcaggctgttaccagctgcgaagaccctctagatttagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

90

Amino Acids

9.66

Weight (kDa)

9.03

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48500 FvH4_6g48510 FvH4_6g48540 FvH4_6g48560 FvH4_6g48560 FvH4_6g48570 FvH4_6g48580
malus_domestica	MD09G1051500.v1.1 MD17G1041700.v1.1 MD17G1041900.v1.1
prunus_persica	Prupe.3G267200_v2.0.a1
pyrus_communis	pycom111g04280 pycom17g04630 pycom17g04640
rosa_chinensis	RchiOBHm_Chr2g0168391
rosa_laevigata	RLG00000021776 RLG00000021777
rosa_multiflora	Rmu_co8307587.1_g000001 Rmu_co8437903.1_g000001 Rmu_sc0003354.1_g000028 Rmu_sc0003354.1_g000030 Rmu_sc0006073.1_g000001 Rmu_sc0007031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083050 Rroxscaffold_2G00083060
rosa_rugosa	Rorug02G0533700 Rorug02G0533700
rosa_samantha	Rh2AG602800 Rh2AG602900 Rh2BG616100 Rh2BG616200 Rh2BG616300 Rh2BG616400 Rh2CG583900 Rh2CG584000 Rh2DG626500 Rh2DG626600
rosa_wichuraiana	Rw2G050020 Rw2G050030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	31, 95
AfiI	CCNNNNNNNGG	2 cut(s)	17, 110
AluBI	AGCT	4 cut(s)	141, 202, 246, 269
AluI	AGCT	4 cut(s)	141, 202, 246, 269
AlwI	GGATC	2 cut(s)	31, 95
ApeKI	GCWGC	1 cut(s)	246
AspS9I	GGNCC	2 cut(s)	50, 101
AvaII	GGWCC	2 cut(s)	50, 101
BbsI	GAAGAC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	233
BceAI	ACGGC	1 cut(s)	197
BfaI	CTAG	3 cut(s)	63, 122, 260
BisI	GCNGC	1 cut(s)	247
BlsI	GCNGC	1 cut(s)	248
Bme18I	GGWCC	2 cut(s)	50, 101
BmgT120I	GGNCC	2 cut(s)	50, 101
BpiI	GAAGAC	1 cut(s)	258
BsaBI	GATNNNNATC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 110
Bse118I	RCCGGY	1 cut(s)	163
Bse1I	ACTGG	1 cut(s)	104
Bse8I	GATNNNNATC	1 cut(s)	86
BseDI	CCNNGG	1 cut(s)	179
BseJI	GATNNNNATC	1 cut(s)	86
BseLI	CCNNNNNNNGG	2 cut(s)	17, 110
BseMII	CTCAG	1 cut(s)	19
BseNI	ACTGG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	17, 110
Bsp143I	GATC	3 cut(s)	23, 87, 108
BspCNI	CTCAG	1 cut(s)	18
BspPI	GGATC	2 cut(s)	31, 95
BsrFI	RCCGGY	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	104
BssAI	RCCGGY	1 cut(s)	163
BssECI	CCNNGG	1 cut(s)	179
BssMI	GATC	3 cut(s)	23, 87, 108
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	5
BstDSI	CCRYGG	1 cut(s)	179
BstKTI	GATC	3 cut(s)	26, 90, 111
BstMBI	GATC	3 cut(s)	23, 87, 108
BstV1I	GCAGC	1 cut(s)	233
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	2 cut(s)	23, 87
BstYI	RGATCY	2 cut(s)	23, 87
BtgI	CCRYGG	1 cut(s)	179
BtgZI	GCGATG	1 cut(s)	231
BtsIMutI	CAGTG	2 cut(s)	111, 160
Cac8I	GCNNGC	1 cut(s)	234
Cfr10I	RCCGGY	1 cut(s)	163
Cfr13I	GGNCC	2 cut(s)	50, 101
CviAII	CATG	2 cut(s)	94, 129
CviJI	RGCY	7 cut(s)	134, 141, 163, 202, 236, 246, 269
CviKI_1	RGCY	7 cut(s)	134, 141, 163, 202, 236, 246, 269
DdeI	CTNAG	1 cut(s)	5
DpnI	GATC	3 cut(s)	25, 89, 110
DpnII	GATC	3 cut(s)	23, 87, 108
Eco47I	GGWCC	2 cut(s)	50, 101
FaeI	CATG	2 cut(s)	97, 132
FaiI	YATR	4 cut(s)	29, 70, 95, 130
FatI	CATG	2 cut(s)	93, 128
Fnu4HI	GCNGC	1 cut(s)	247
Fsp4HI	GCNGC	1 cut(s)	247
FspBI	CTAG	3 cut(s)	63, 122, 260
GluI	GCNGC	1 cut(s)	247
HapII	CCGG	1 cut(s)	164
Hin1II	CATG	2 cut(s)	97, 132
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	188
Hpy188I	TCNGA	2 cut(s)	8, 113
Hpy188III	TCNNGA	1 cut(s)	260
Hpy8I	GTNNAC	1 cut(s)	188
HpyF3I	CTNAG	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	97, 132
Kzo9I	GATC	3 cut(s)	23, 87, 108
LpnPI	CCDG	9 cut(s)	3, 48, 66, 117, 155, 177, 212, 218, 256
Lsp1109I	GCAGC	1 cut(s)	233
MaeI	CTAG	3 cut(s)	63, 122, 260
MaeIII	GTNAC	2 cut(s)	155, 238
MalI	GATC	3 cut(s)	25, 89, 110
MboI	GATC	3 cut(s)	23, 87, 108
MboII	GAAGA	1 cut(s)	263
MflI	RGATCY	2 cut(s)	23, 87
MnlI	CCTC	1 cut(s)	267
MseI	TTAA	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	246
MspI	CCGG	1 cut(s)	164
NdeII	GATC	3 cut(s)	23, 87, 108
NlaIII	CATG	2 cut(s)	97, 132
NmuCI	GTSAC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	248
PspPI	GGNCC	2 cut(s)	50, 101
PsuI	RGATCY	2 cut(s)	23, 87
PvuII	CAGCTG	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	1 cut(s)	247
Sau3AI	GATC	3 cut(s)	23, 87, 108
Sau96I	GGNCC	2 cut(s)	50, 101
SetI	ASST	5 cut(s)	22, 143, 204, 248, 271
SinI	GGWCC	2 cut(s)	50, 101
SspMI	CTAG	3 cut(s)	63, 122, 260
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	2 cut(s)	111, 160
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	1 cut(s)	246
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	3 cut(s)	44, 57, 133
TspRI	CASTG	2 cut(s)	111, 160
VpaK11BI	GGWCC	2 cut(s)	50, 101
XbaI	TCTAGA	1 cut(s)	259
XspI	CTAG	3 cut(s)	63, 122, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.