Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006073.1

Orthogroup ID

OG0002869

Physical Location & Seq

Genomic Coordinates Forward (+)

20724 .. 21808

Gene Structure 1085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006073.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atggccccgacagagttggtctcagtggaaaccccaatagttggaaaaggtccattttacccacctgggtttttgaaaaaggtggtggcagagatgatagctacctttctgctggtgtttgtaacatgtggttcagctgctctttcagcgagtgatgaacgcaaagtctcaaagcttggagcttccatgaccggagggcttatagtgacggtgatgatctacgcagttgggcacatatctggggcacacatgaacccggccgtcactctagcttttgctgcctttagacattttccatggaaacaggtaaacctagctttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

107

Amino Acids

11.33

Weight (kDa)

9.3

Isoelectric Point (pI)

22.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48500 FvH4_6g48510 FvH4_6g48540 FvH4_6g48560 FvH4_6g48560 FvH4_6g48570 FvH4_6g48580
malus_domestica	MD09G1051500.v1.1 MD17G1041700.v1.1 MD17G1041900.v1.1
prunus_persica	Prupe.3G267200_v2.0.a1
pyrus_communis	pycom111g04280 pycom17g04630 pycom17g04640
rosa_chinensis	RchiOBHm_Chr2g0168391
rosa_laevigata	RLG00000021776 RLG00000021777
rosa_multiflora	Rmu_co8307587.1_g000001 Rmu_co8437903.1_g000001 Rmu_sc0003354.1_g000028 Rmu_sc0003354.1_g000030 Rmu_sc0006073.1_g000001 Rmu_sc0007031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083050 Rroxscaffold_2G00083060
rosa_rugosa	Rorug02G0533700 Rorug02G0533700
rosa_samantha	Rh2AG602800 Rh2AG602900 Rh2BG616100 Rh2BG616200 Rh2BG616300 Rh2BG616400 Rh2CG583900 Rh2CG584000 Rh2DG626500 Rh2DG626600
rosa_wichuraiana	Rw2G050020 Rw2G050030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	41
AcoI	YGGCCR	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	41
AflIII	ACRYGT	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	6 cut(s)	101, 137, 175, 182, 272, 317
AluI	AGCT	6 cut(s)	101, 137, 175, 182, 272, 317
Alw26I	GTCTC	2 cut(s)	25, 172
AoxI	GGCC	2 cut(s)	3, 258
ApeKI	GCWGC	2 cut(s)	137, 278
AspS9I	GGNCC	2 cut(s)	4, 50
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	50
BaeGI	GKGCMC	2 cut(s)	234, 247
BbvI	GCAGC	2 cut(s)	124, 265
BceAI	ACGGC	1 cut(s)	245
BciT130I	CCWGG	1 cut(s)	66
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	2 cut(s)	25, 172
BfaI	CTAG	2 cut(s)	269, 314
BisI	GCNGC	2 cut(s)	138, 279
BlsI	GCNGC	2 cut(s)	139, 280
Bme1390I	CCNGG	2 cut(s)	66, 257
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	2 cut(s)	4, 50
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	66, 257
BplI	GAGNNNNNCTC	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	257
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	2 cut(s)	65, 296
BsaWI	WCCGGW	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	65, 296
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	36
BseSI	GKGCMC	2 cut(s)	234, 247
BseX3I	CGGCCG	1 cut(s)	258
BseXI	GCAGC	2 cut(s)	124, 265
Bsh1285I	CGRYCG	1 cut(s)	261
BshFI	GGCC	2 cut(s)	5, 260
BsiEI	CGRYCG	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	192, 257
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	2 cut(s)	25, 172
BsnI	GGCC	2 cut(s)	5, 260
Bso31I	GGTCTC	1 cut(s)	25
Bsp1286I	GDGCHC	2 cut(s)	234, 247
Bsp143I	GATC	1 cut(s)	216
Bsp19I	CCATGG	1 cut(s)	296
BspANI	GGCC	2 cut(s)	5, 260
BspCNI	CTCAG	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	6
BspTNI	GGTCTC	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	65, 296
BssMI	GATC	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	296
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	22
BstDSI	CCRYGG	1 cut(s)	296
BstKTI	GATC	1 cut(s)	219
BstMAI	GTCTC	2 cut(s)	25, 172
BstMBI	GATC	1 cut(s)	216
BstMCI	CGRYCG	1 cut(s)	261
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 278
BstNI	CCWGG	1 cut(s)	66
BstNSI	RCATGY	1 cut(s)	129
BstSCI	CCNGG	2 cut(s)	64, 255
BstSLI	GKGCMC	2 cut(s)	234, 247
BstV1I	GCAGC	2 cut(s)	124, 265
BstZI	CGGCCG	1 cut(s)	258
BsuRI	GGCC	2 cut(s)	5, 260
BtgI	CCRYGG	1 cut(s)	296
BtsIMutI	CAGTG	1 cut(s)	30
Cfr13I	GGNCC	2 cut(s)	4, 50
CviAII	CATG	4 cut(s)	126, 187, 250, 297
CviJI	RGCY	9 cut(s)	5, 101, 137, 175, 182, 199, 260, 272, 317
CviKI_1	RGCY	9 cut(s)	5, 101, 137, 175, 182, 199, 260, 272, 317
DdeI	CTNAG	1 cut(s)	22
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
EaeI	YGGCCR	1 cut(s)	258
EagI	CGGCCG	1 cut(s)	258
EclXI	CGGCCG	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	296
Eco31I	GGTCTC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	50
Eco52I	CGGCCG	1 cut(s)	258
EcoRII	CCWGG	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	296
FaeI	CATG	4 cut(s)	129, 190, 253, 300
FaiI	YATR	6 cut(s)	127, 188, 203, 236, 251, 298
FatI	CATG	4 cut(s)	125, 186, 249, 296
Fnu4HI	GCNGC	2 cut(s)	138, 279
Fsp4HI	GCNGC	2 cut(s)	138, 279
FspBI	CTAG	2 cut(s)	269, 314
GluI	GCNGC	2 cut(s)	138, 279
HaeIII	GGCC	2 cut(s)	5, 260
HapII	CCGG	2 cut(s)	192, 257
Hin1II	CATG	4 cut(s)	129, 190, 253, 300
HindIII	AAGCTT	1 cut(s)	173
HpaII	CCGG	2 cut(s)	192, 257
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	1 cut(s)	323
Hpy8I	GTNNAC	1 cut(s)	310
HpyCH4III	ACNGT	1 cut(s)	211
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 278
HpyF3I	CTNAG	1 cut(s)	22
Hsp92II	CATG	4 cut(s)	129, 190, 253, 300
Kzo9I	GATC	1 cut(s)	216
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	7 cut(s)	51, 78, 98, 205, 225, 270, 290
Lsp1109I	GCAGC	2 cut(s)	124, 265
MaeI	CTAG	2 cut(s)	269, 314
MaeIII	GTNAC	3 cut(s)	121, 205, 262
MalI	GATC	1 cut(s)	218
MboI	GATC	1 cut(s)	216
MhlI	GDGCHC	2 cut(s)	234, 247
MmeI	TCCRAC	1 cut(s)	22
MnlI	CCTC	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	2 cut(s)	192, 257
MspR9I	CCNGG	2 cut(s)	66, 257
MvaI	CCWGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	2 cut(s)	146, 278
NciI	CCSGG	1 cut(s)	257
NcoI	CCATGG	1 cut(s)	296
NdeII	GATC	1 cut(s)	216
NlaIII	CATG	4 cut(s)	129, 190, 253, 300
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	205, 262
NspI	RCATGY	1 cut(s)	129
PciI	ACATGT	1 cut(s)	125
PflMI	CCANNNNNTGG	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	139, 280
PscI	ACATGT	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	4, 50
PvuII	CAGCTG	1 cut(s)	137
SatI	GCNGC	2 cut(s)	138, 279
Sau3AI	GATC	1 cut(s)	216
Sau96I	GGNCC	2 cut(s)	4, 50
ScrFI	CCNGG	2 cut(s)	66, 257
SduI	GDGCHC	2 cut(s)	234, 247
SinI	GGWCC	1 cut(s)	50
SspMI	CTAG	2 cut(s)	269, 314
StyD4I	CCNGG	2 cut(s)	64, 255
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	1 cut(s)	211
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	2 cut(s)	205, 262
TseI	GCWGC	2 cut(s)	137, 278
Tsp45I	GTSAC	2 cut(s)	205, 262
TspDTI	ATGAA	2 cut(s)	171, 266
TspRI	CASTG	1 cut(s)	30
Van91I	CCANNNNNTGG	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	50
XceI	RCATGY	1 cut(s)	129
XspI	CTAG	2 cut(s)	269, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.