Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003354.1

Orthogroup ID

OG0002869

Physical Location & Seq

Genomic Coordinates Forward (+)

114522 .. 114995

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003354.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atggcgacaaaagtgcctacagaacacagaaatgacacaaacgagttagacttggcggcaaacccaaaatcccaaagttcaatatcagtatttgaacgacattaccctcctggctttttgaaaaaggtggtggcagagactatagcaacgtttctgttggtgtttgtgacatgtggttcagctgctcttgcagcgagcgatgaacacaaggtctcaaagcttggagcttccatagttggggggctcatagtaacggccatgatctatgctgttgggcacatctccggtgcacacatgaacccggctgttactctagcctttgctgccgtcaggcattttccatggaaacaggtacagctagctttcttttcattctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

125

Amino Acids

13.41

Weight (kDa)

8.86

Isoelectric Point (pI)

29.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48500 FvH4_6g48510 FvH4_6g48540 FvH4_6g48560 FvH4_6g48560 FvH4_6g48570 FvH4_6g48580
malus_domestica	MD09G1051500.v1.1 MD17G1041700.v1.1 MD17G1041900.v1.1
prunus_persica	Prupe.3G267200_v2.0.a1
pyrus_communis	pycom111g04280 pycom17g04630 pycom17g04640
rosa_chinensis	RchiOBHm_Chr2g0168391
rosa_laevigata	RLG00000021776 RLG00000021777
rosa_multiflora	Rmu_co8307587.1_g000001 Rmu_co8437903.1_g000001 Rmu_sc0003354.1_g000028 Rmu_sc0003354.1_g000030 Rmu_sc0006073.1_g000001 Rmu_sc0007031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083050 Rroxscaffold_2G00083060
rosa_rugosa	Rorug02G0533700 Rorug02G0533700
rosa_samantha	Rh2AG602800 Rh2AG602900 Rh2BG616100 Rh2BG616200 Rh2BG616300 Rh2BG616400 Rh2CG583900 Rh2CG584000 Rh2DG626500 Rh2DG626600
rosa_wichuraiana	Rw2G050020 Rw2G050030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	56
AclI	AACGTT	1 cut(s)	149
AcoI	YGGCCR	1 cut(s)	255
AfaI	GTAC	1 cut(s)	354
AfiI	CCNNNNNNNGG	1 cut(s)	237
AflIII	ACRYGT	1 cut(s)	170
AgsI	TTSAA	3 cut(s)	81, 95, 121
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	5 cut(s)	182, 220, 227, 358, 362
AluI	AGCT	5 cut(s)	182, 220, 227, 358, 362
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	2 cut(s)	131, 217
Alw44I	GTGCAC	1 cut(s)	288
AoxI	GGCC	1 cut(s)	255
ApaLI	GTGCAC	1 cut(s)	288
ApeKI	GCWGC	3 cut(s)	182, 191, 323
AsuC2I	CCSGG	1 cut(s)	302
AsuNHI	GCTAGC	1 cut(s)	358
BaeGI	GKGCMC	2 cut(s)	279, 292
BanII	GRGCYC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	3 cut(s)	169, 203, 310
BceAI	ACGGC	2 cut(s)	270, 311
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	111
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	2 cut(s)	131, 217
BfaI	CTAG	2 cut(s)	314, 359
BfmI	CTRYAG	2 cut(s)	18, 141
BisI	GCNGC	4 cut(s)	57, 183, 192, 324
BlsI	GCNGC	4 cut(s)	58, 184, 193, 325
Bme1390I	CCNGG	2 cut(s)	111, 302
BmrFI	CCNGG	2 cut(s)	111, 302
BmtI	GCTAGC	1 cut(s)	362
BpuMI	CCSGG	1 cut(s)	302
BsaI	GGTCTC	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	341
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	341
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseSI	GKGCMC	2 cut(s)	279, 292
BseXI	GCAGC	3 cut(s)	169, 203, 310
BshFI	GGCC	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	292
BsiSI	CCGG	2 cut(s)	285, 302
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmAI	GTCTC	2 cut(s)	131, 217
BsnI	GGCC	1 cut(s)	257
Bso31I	GGTCTC	1 cut(s)	217
Bsp1286I	GDGCHC	3 cut(s)	246, 279, 292
Bsp143I	GATC	1 cut(s)	261
Bsp19I	CCATGG	1 cut(s)	341
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	1 cut(s)	257
BspOI	GCTAGC	1 cut(s)	362
BspTNI	GGTCTC	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	341
BssMI	GATC	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	341
Bst2UI	CCWGG	1 cut(s)	111
BstC8I	GCNNGC	2 cut(s)	196, 360
BstDSI	CCRYGG	1 cut(s)	341
BstKTI	GATC	1 cut(s)	264
BstMAI	GTCTC	2 cut(s)	131, 217
BstMBI	GATC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 191, 323
BstNI	CCWGG	1 cut(s)	111
BstNSI	RCATGY	1 cut(s)	174
BstSCI	CCNGG	2 cut(s)	109, 300
BstSFI	CTRYAG	2 cut(s)	18, 141
BstSLI	GKGCMC	2 cut(s)	279, 292
BstV1I	GCAGC	3 cut(s)	169, 203, 310
BsuRI	GGCC	1 cut(s)	257
BtgI	CCRYGG	1 cut(s)	341
BtgZI	GCGATG	1 cut(s)	213
Cac8I	GCNNGC	2 cut(s)	196, 360
Csp6I	GTAC	1 cut(s)	353
CviAII	CATG	4 cut(s)	171, 259, 295, 342
CviQI	GTAC	1 cut(s)	353
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
EaeI	YGGCCR	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	341
Eco24I	GRGCYC	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	341
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	341
FaeI	CATG	4 cut(s)	174, 262, 298, 345
FaiI	YATR	8 cut(s)	143, 172, 233, 248, 260, 267, 296, 343
FatI	CATG	4 cut(s)	170, 258, 294, 341
Fnu4HI	GCNGC	4 cut(s)	57, 183, 192, 324
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	4 cut(s)	57, 183, 192, 324
FspBI	CTAG	2 cut(s)	314, 359
GluI	GCNGC	4 cut(s)	57, 183, 192, 324
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	2 cut(s)	285, 302
Hin1II	CATG	4 cut(s)	174, 262, 298, 345
HindIII	AAGCTT	1 cut(s)	218
HpaII	CCGG	2 cut(s)	285, 302
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	1 cut(s)	377
Hpy8I	GTNNAC	1 cut(s)	290
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	2 cut(s)	191, 290
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 191, 323
HpySE526I	ACGT	1 cut(s)	149
Hsp92II	CATG	4 cut(s)	174, 262, 298, 345
Kzo9I	GATC	1 cut(s)	261
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	6 cut(s)	96, 123, 298, 315, 316, 335
Lsp1109I	GCAGC	3 cut(s)	169, 203, 310
MaeI	CTAG	2 cut(s)	314, 359
MaeII	ACGT	1 cut(s)	149
MaeIII	GTNAC	3 cut(s)	166, 250, 307
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MhlI	GDGCHC	3 cut(s)	246, 279, 292
MnlI	CCTC	1 cut(s)	117
MslI	CAYNNNNRTG	1 cut(s)	30
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	2 cut(s)	285, 302
MspR9I	CCNGG	2 cut(s)	111, 302
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	188, 191, 323
NciI	CCSGG	1 cut(s)	302
NcoI	CCATGG	1 cut(s)	341
NdeII	GATC	1 cut(s)	261
NheI	GCTAGC	1 cut(s)	358
NlaIII	CATG	4 cut(s)	174, 262, 298, 345
NmuCI	GTSAC	1 cut(s)	166
NspI	RCATGY	1 cut(s)	174
PciI	ACATGT	1 cut(s)	170
PkrI	GCNGC	4 cut(s)	58, 184, 193, 325
PscI	ACATGT	1 cut(s)	170
Psp1406I	AACGTT	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
RseI	CAYNNNNRTG	1 cut(s)	30
SatI	GCNGC	4 cut(s)	57, 183, 192, 324
Sau3AI	GATC	1 cut(s)	261
ScrFI	CCNGG	2 cut(s)	111, 302
SduI	GDGCHC	3 cut(s)	246, 279, 292
SetI	ASST	9 cut(s)	129, 152, 184, 213, 222, 229, 354, 360, 364
SfcI	CTRYAG	2 cut(s)	18, 141
SmiMI	CAYNNNNRTG	1 cut(s)	30
SsiI	CCGC	1 cut(s)	56
SspMI	CTAG	2 cut(s)	314, 359
StyD4I	CCNGG	2 cut(s)	109, 300
StyI	CCWWGG	1 cut(s)	341
TaiI	ACGT	1 cut(s)	152
TauI	GCSGC	1 cut(s)	59
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	3 cut(s)	182, 191, 323
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	3 cut(s)	216, 311, 360
VneI	GTGCAC	1 cut(s)	288
XceI	RCATGY	1 cut(s)	174
XspI	CTAG	2 cut(s)	314, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.