Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003694

Physical Location & Seq

Genomic Coordinates Reverse (-)

43189002 .. 43191162

Gene Structure 2161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG204900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGAAAATTCCAGCACTGATAAATCGGAGATCTGCGTCGACGCTGCCGAAGTAGATTCAGAAGAAATGACAGAGGACATGGAAACCAAGCACATGTTGGAGCATGACCCATCCTTCTCCAACTCGTGCATTGAATGCCGGATATGCCAGGTCGAGGACTCCATTGATGAAATGGAGTCTCCTTGCCGGTGCAACGGCACCCTCAAGTTTGCTCACCGAGATTGTATCCAGCAATGGATCAACTTGAGTTACAAGACCACTTGCGAAATTTGTAACCAGCCGTATGAGGGTGGTTATACACTACCGGTACCGCCCCCAGCACCACCGCCACGGCAGCCTACCAGGAGGGAGGCCCTGGACACTATAAGGGCTAGAAGAGCGCATGTGGCAGTAGACGCAGAGGTATATCGCGCTCGACTTAATGCGGCAAATAGTGCCATTTTAGGTCGAAGTTTTGTGTGCCGCATTGCTCCTGTCATTGTTATCTGTTTATACATCATCGTCATAATGAGTAACATAGGCAGCGGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008970 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0016298 GO:0016787 GO:0016788 GO:0034644 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0052689 GO:0071214 GO:0071478 GO:0071482 GO:0071493 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

177

Amino Acids

19.77

Weight (kDa)

4.92

Isoelectric Point (pI)

53.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	46 - 91	2.6e-14	RING-variant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15710 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470
malus_domestica	MD09G1051400.v1.1 MD17G1041600.v1.1
prunus_persica	Prupe.3G267400_v2.0.a1
rosa_laevigata	RLG00000008079 RLG00000021771 RLG00000021779
rosa_multiflora	Rmu_co8372247.1_g000001 Rmu_co8415085.1_g000001 Rmu_sc0003354.1_g000020 Rmu_sc0003551.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024980 Rroxscaffold_2G00083030 Rroxscaffold_5G00359110
rosa_rugosa	Rorug02G0533300.1 Rorug02G0533700 Rorug04G0132900 Rorug04G0133000
rosa_samantha	Rh2AG602500 Rh2BG615800 Rh2CG584200 Rh2DG626000 Rh2DG626900 Rh4AG193900 Rh4BG192400 Rh4CG204900 Rh4DG191600 Rh5BG374300
rosa_wichuraiana	Rw4G016500 Rw5G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	307
AccB1I	GGYRCC	2 cut(s)	197, 307
AccI	GTMKAC	2 cut(s)	39, 393
AccII	CGCG	1 cut(s)	411
AciI	CCGC	5 cut(s)	311, 326, 425, 463, 525
AclWI	GGATC	1 cut(s)	245
AcsI	RAATTY	2 cut(s)	7, 267
AfaI	GTAC	1 cut(s)	309
AfiI	CCNNNNNNNGG	2 cut(s)	154, 287
AflIII	ACRYGT	1 cut(s)	93
AgeI	ACCGGT	1 cut(s)	304
AgsI	TTSAA	1 cut(s)	134
AjnI	CCWGG	3 cut(s)	147, 341, 354
Alw26I	GTCTC	1 cut(s)	183
AlwI	GGATC	1 cut(s)	245
AoxI	GGCC	1 cut(s)	351
ApeKI	GCWGC	3 cut(s)	44, 334, 522
ApoI	RAATTY	2 cut(s)	7, 267
AsiGI	ACCGGT	1 cut(s)	304
Asp718I	GGTACC	1 cut(s)	307
AspLEI	GCGC	2 cut(s)	382, 413
AspS9I	GGNCC	1 cut(s)	352
AsuHPI	GGTGA	1 cut(s)	206
BanI	GGYRCC	2 cut(s)	197, 307
BauI	CACGAG	1 cut(s)	124
BbvI	GCAGC	2 cut(s)	31, 346
BccI	CCATC	1 cut(s)	118
BceAI	ACGGC	3 cut(s)	211, 265, 347
BciT130I	CCWGG	3 cut(s)	149, 343, 356
BciVI	GTATCC	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	236
BglII	AGATCT	1 cut(s)	30
BisI	GCNGC	5 cut(s)	45, 335, 426, 463, 523
BlsI	GCNGC	5 cut(s)	46, 336, 427, 464, 524
Bme1390I	CCNGG	3 cut(s)	149, 343, 356
BmgT120I	GGNCC	1 cut(s)	352
BmiI	GGNNCC	2 cut(s)	199, 309
BmrFI	CCNGG	3 cut(s)	149, 343, 356
BpuEI	CTTGAG	2 cut(s)	188, 265
BsaJI	CCNNGG	2 cut(s)	329, 354
BsaWI	WCCGGW	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 287
Bse118I	RCCGGY	2 cut(s)	186, 304
Bse3DI	GCAATG	2 cut(s)	239, 465
BseBI	CCWGG	3 cut(s)	149, 343, 356
BseDI	CCNNGG	2 cut(s)	329, 354
BseGI	GGATG	1 cut(s)	110
BseLI	CCNNNNNNNGG	2 cut(s)	154, 287
BseMI	GCAATG	2 cut(s)	239, 465
BseXI	GCAGC	2 cut(s)	31, 346
BseYI	CCCAGC	1 cut(s)	316
Bsh1236I	CGCG	1 cut(s)	411
BshFI	GGCC	1 cut(s)	353
BshNI	GGYRCC	2 cut(s)	197, 307
BshTI	ACCGGT	1 cut(s)	304
BsiSI	CCGG	3 cut(s)	139, 187, 305
BslI	CCNNNNNNNGG	2 cut(s)	154, 287
BsmAI	GTCTC	1 cut(s)	183
BsmI	GAATGC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	353
Bsp143I	GATC	2 cut(s)	30, 237
BspACI	CCGC	5 cut(s)	311, 326, 425, 463, 525
BspANI	GGCC	1 cut(s)	353
BspFNI	CGCG	1 cut(s)	411
BspLI	GGNNCC	2 cut(s)	199, 309
BspPI	GGATC	1 cut(s)	245
BspQI	GCTCTTC	1 cut(s)	370
BspT107I	GGYRCC	2 cut(s)	197, 307
BsrDI	GCAATG	2 cut(s)	239, 465
BsrFI	RCCGGY	2 cut(s)	186, 304
BssAI	RCCGGY	2 cut(s)	186, 304
BssECI	CCNNGG	2 cut(s)	329, 354
BssMI	GATC	2 cut(s)	30, 237
BssSI	CACGAG	1 cut(s)	124
Bst2BI	CACGAG	1 cut(s)	124
Bst2UI	CCWGG	3 cut(s)	149, 343, 356
Bst6I	CTCTTC	1 cut(s)	370
BstAPI	GCANNNNNTGC	2 cut(s)	135, 434
BstDSI	CCRYGG	1 cut(s)	329
BstF5I	GGATG	1 cut(s)	110
BstFNI	CGCG	1 cut(s)	411
BstHHI	GCGC	2 cut(s)	382, 413
BstKTI	GATC	2 cut(s)	33, 240
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	2 cut(s)	30, 237
BstMWI	GCNNNNNNNGC	7 cut(s)	135, 144, 334, 377, 386, 395, 434
BstNI	CCWGG	3 cut(s)	149, 343, 356
BstNSI	RCATGY	2 cut(s)	97, 386
BstSCI	CCNGG	3 cut(s)	147, 341, 354
BstUI	CGCG	1 cut(s)	411
BstV1I	GCAGC	2 cut(s)	31, 346
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BsuI	GTATCC	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	353
BtgI	CCRYGG	1 cut(s)	329
BtsCI	GGATG	1 cut(s)	110
BtsIMutI	CAGTG	1 cut(s)	15
CfoI	GCGC	2 cut(s)	382, 413
Cfr10I	RCCGGY	2 cut(s)	186, 304
Cfr13I	GGNCC	1 cut(s)	352
CseI	GACGC	3 cut(s)	25, 50, 404
Csp6I	GTAC	1 cut(s)	308
CspAI	ACCGGT	1 cut(s)	304
CviAII	CATG	4 cut(s)	79, 94, 104, 383
CviJI	RGCY	4 cut(s)	280, 337, 353, 371
CviKI_1	RGCY	4 cut(s)	280, 337, 353, 371
CviQI	GTAC	1 cut(s)	308
DpnI	GATC	2 cut(s)	32, 239
DpnII	GATC	2 cut(s)	30, 237
Eam1104I	CTCTTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	370
EcoO109I	RGGNCCY	1 cut(s)	352
EcoRII	CCWGG	3 cut(s)	147, 341, 354
FaeI	CATG	4 cut(s)	82, 97, 107, 386
FatI	CATG	4 cut(s)	78, 93, 103, 382
FblI	GTMKAC	2 cut(s)	39, 393
Fnu4HI	GCNGC	5 cut(s)	45, 335, 426, 463, 523
FokI	GGATG	1 cut(s)	97
Fsp4HI	GCNGC	5 cut(s)	45, 335, 426, 463, 523
FspBI	CTAG	1 cut(s)	372
GlaI	GCGC	2 cut(s)	381, 412
GluI	GCNGC	5 cut(s)	45, 335, 426, 463, 523
GsaI	CCCAGC	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	3 cut(s)	139, 187, 305
HgaI	GACGC	3 cut(s)	25, 50, 404
HhaI	GCGC	2 cut(s)	382, 413
Hin1II	CATG	4 cut(s)	82, 97, 107, 386
Hin6I	GCGC	2 cut(s)	380, 411
HinP1I	GCGC	2 cut(s)	380, 411
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	3 cut(s)	56, 158, 176
HpaII	CCGG	3 cut(s)	139, 187, 305
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	2 cut(s)	40, 394
Hpy188I	TCNGA	2 cut(s)	28, 61
Hpy8I	GTNNAC	2 cut(s)	40, 394
Hpy99I	CGWCG	2 cut(s)	41, 44
HpyAV	CCTTC	1 cut(s)	124
HpyCH4V	TGCA	2 cut(s)	129, 192
HpyF10VI	GCNNNNNNNGC	7 cut(s)	135, 144, 334, 377, 386, 395, 434
Hsp92II	CATG	4 cut(s)	82, 97, 107, 386
HspAI	GCGC	2 cut(s)	380, 411
KpnI	GGTACC	1 cut(s)	311
Kzo9I	GATC	2 cut(s)	30, 237
LguI	GCTCTTC	1 cut(s)	370
LmnI	GCTCC	2 cut(s)	100, 475
Lsp1109I	GCAGC	2 cut(s)	31, 346
MaeI	CTAG	1 cut(s)	372
MaeIII	GTNAC	3 cut(s)	248, 272, 512
MalI	GATC	2 cut(s)	32, 239
MboI	GATC	2 cut(s)	30, 237
MboII	GAAGA	2 cut(s)	74, 387
MflI	RGATCY	1 cut(s)	30
MluCI	AATT	2 cut(s)	7, 267
MlyI	GAGTC	2 cut(s)	152, 185
MmeI	TCCRAC	2 cut(s)	78, 144
MnlI	CCTC	7 cut(s)	67, 148, 212, 280, 339, 343, 394
MseI	TTAA	2 cut(s)	420, 532
MspA1I	CMGCKG	1 cut(s)	525
MspI	CCGG	3 cut(s)	139, 187, 305
MspR9I	CCNGG	3 cut(s)	149, 343, 356
Mva1269I	GAATGC	1 cut(s)	140
MvaI	CCWGG	3 cut(s)	149, 343, 356
MvnI	CGCG	1 cut(s)	411
MwoI	GCNNNNNNNGC	7 cut(s)	135, 144, 334, 377, 386, 395, 434
NdeII	GATC	2 cut(s)	30, 237
NlaIII	CATG	4 cut(s)	82, 97, 107, 386
NlaIV	GGNNCC	2 cut(s)	199, 309
NspI	RCATGY	2 cut(s)	97, 386
PciI	ACATGT	1 cut(s)	93
PciSI	GCTCTTC	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PctI	GAATGC	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	56
PinAI	ACCGGT	1 cut(s)	304
PkrI	GCNGC	5 cut(s)	46, 336, 427, 464, 524
PleI	GAGTC	2 cut(s)	152, 184
PpsI	GAGTC	2 cut(s)	152, 184
PscI	ACATGT	1 cut(s)	93
Psp6I	CCWGG	3 cut(s)	147, 341, 354
PspFI	CCCAGC	1 cut(s)	316
PspGI	CCWGG	3 cut(s)	147, 341, 354
PspN4I	GGNNCC	2 cut(s)	199, 309
PspPI	GGNCC	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	30
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SalI	GTCGAC	1 cut(s)	38
SapI	GCTCTTC	1 cut(s)	370
SaqAI	TTAA	2 cut(s)	420, 532
SatI	GCNGC	5 cut(s)	45, 335, 426, 463, 523
Sau3AI	GATC	2 cut(s)	30, 237
Sau96I	GGNCC	1 cut(s)	352
SchI	GAGTC	2 cut(s)	152, 185
ScrFI	CCNGG	3 cut(s)	149, 343, 356
SetI	ASST	3 cut(s)	153, 405, 448
SgrDI	CGTCGACG	1 cut(s)	38
SmlI	CTYRAG	2 cut(s)	203, 244
SmoI	CTYRAG	2 cut(s)	203, 244
Sse9I	AATT	2 cut(s)	7, 267
SsiI	CCGC	5 cut(s)	311, 326, 425, 463, 525
SspMI	CTAG	1 cut(s)	372
StyD4I	CCNGG	3 cut(s)	147, 341, 354
TaqI	TCGA	4 cut(s)	39, 153, 415, 448
TasI	AATT	2 cut(s)	7, 267
TauI	GCSGC	2 cut(s)	428, 465
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	2 cut(s)	420, 532
Tru9I	TTAA	2 cut(s)	420, 532
TscAI	CASTG	1 cut(s)	22
TseI	GCWGC	3 cut(s)	44, 334, 522
TspDTI	ATGAA	1 cut(s)	183
TspRI	CASTG	1 cut(s)	22
XapI	RAATTY	2 cut(s)	7, 267
XceI	RCATGY	2 cut(s)	97, 386
XcmI	CCANNNNNNNNNTGG	2 cut(s)	94, 169
XmiI	GTMKAC	2 cut(s)	39, 393
XspI	CTAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.