Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003694

Physical Location & Seq

Genomic Coordinates Reverse (-)

33246519 .. 33249262

Gene Structure 2744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG192400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGAGAATTCCAGCACTGATAAATCAGAGGTCTGCGTCGACGCTGCCGAAGTAGATTCAGAAGAAATGATAGAGGACATGGAAACCAAGCACATGTTGGAGCATGACCCATCCTTCTCCAACTCGTGCATTGAATGCCGGATATGCCAGGTCGAGGACTCCATTGATGGAATGGAGTCTCCTTGCCGGTGCAACGGCACCCTCAAGTTTGCTCACCGAGATTGTATCCAGCAATGGATCAGCTTGAGTTACAAGACCACTTGCTCCTGTCATTGTGAGTCAGTAGACGCAGAGGTATATCGCGCTCGTGGCAGTAGACGCAGAGGTATATCGCGCTCGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008970 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0016298 GO:0016787 GO:0016788 GO:0034644 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0052689 GO:0071214 GO:0071478 GO:0071482 GO:0071493 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

114

Amino Acids

12.92

Weight (kDa)

4.82

Isoelectric Point (pI)

56.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	46 - 89	1.5e-12	RING-variant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15710 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470
malus_domestica	MD09G1051400.v1.1 MD17G1041600.v1.1
prunus_persica	Prupe.3G267400_v2.0.a1
rosa_laevigata	RLG00000008079 RLG00000021771 RLG00000021779
rosa_multiflora	Rmu_co8372247.1_g000001 Rmu_co8415085.1_g000001 Rmu_sc0003354.1_g000020 Rmu_sc0003551.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024980 Rroxscaffold_2G00083030 Rroxscaffold_5G00359110
rosa_rugosa	Rorug02G0533300.1 Rorug02G0533700 Rorug04G0132900 Rorug04G0133000
rosa_samantha	Rh2AG602500 Rh2BG615800 Rh2CG584200 Rh2DG626000 Rh2DG626900 Rh4AG193900 Rh4BG192400 Rh4CG204900 Rh4DG191600 Rh5BG374300
rosa_wichuraiana	Rw4G016500 Rw5G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AccI	GTMKAC	3 cut(s)	39, 285, 316
AccII	CGCG	2 cut(s)	303, 334
AclWI	GGATC	1 cut(s)	245
AcsI	RAATTY	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	154
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	134
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	1 cut(s)	243
AluI	AGCT	1 cut(s)	243
Alw26I	GTCTC	1 cut(s)	183
AlwI	GGATC	1 cut(s)	245
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	1 cut(s)	7
AspLEI	GCGC	2 cut(s)	305, 336
AsuHPI	GGTGA	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	197
BauI	CACGAG	2 cut(s)	124, 306
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	2 cut(s)	118, 161
BceAI	ACGGC	1 cut(s)	211
BciT130I	CCWGG	1 cut(s)	149
BciVI	GTATCC	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	183
BfuI	GTATCC	1 cut(s)	236
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	149
BpuEI	CTTGAG	2 cut(s)	188, 265
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse118I	RCCGGY	1 cut(s)	186
Bse3DI	GCAATG	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	149
BseGI	GGATG	1 cut(s)	110
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMI	GCAATG	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	31
Bsh1236I	CGCG	2 cut(s)	303, 334
BshNI	GGYRCC	1 cut(s)	197
BsiSI	CCGG	2 cut(s)	139, 187
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	183
BsmI	GAATGC	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	237
BspFNI	CGCG	2 cut(s)	303, 334
BspLI	GGNNCC	1 cut(s)	199
BspPI	GGATC	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	186
BssAI	RCCGGY	1 cut(s)	186
BssMI	GATC	1 cut(s)	237
BssSI	CACGAG	2 cut(s)	124, 306
Bst2BI	CACGAG	2 cut(s)	124, 306
Bst2UI	CCWGG	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	110
BstFNI	CGCG	2 cut(s)	303, 334
BstHHI	GCGC	2 cut(s)	305, 336
BstKTI	GATC	1 cut(s)	240
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	4 cut(s)	135, 144, 309, 318
BstNI	CCWGG	1 cut(s)	149
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	147
BstUI	CGCG	2 cut(s)	303, 334
BstV1I	GCAGC	1 cut(s)	31
BsuI	GTATCC	1 cut(s)	236
BtsCI	GGATG	1 cut(s)	110
BtsIMutI	CAGTG	1 cut(s)	15
CfoI	GCGC	2 cut(s)	305, 336
Cfr10I	RCCGGY	1 cut(s)	186
CseI	GACGC	4 cut(s)	25, 50, 296, 327
CviAII	CATG	3 cut(s)	79, 94, 104
CviJI	RGCY	1 cut(s)	243
CviKI_1	RGCY	1 cut(s)	243
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	147
FaeI	CATG	3 cut(s)	82, 97, 107
FaiI	YATR	6 cut(s)	80, 95, 105, 145, 298, 329
FatI	CATG	3 cut(s)	78, 93, 103
FblI	GTMKAC	3 cut(s)	39, 285, 316
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	1 cut(s)	97
Fsp4HI	GCNGC	1 cut(s)	45
GlaI	GCGC	2 cut(s)	304, 335
GluI	GCNGC	1 cut(s)	45
HapII	CCGG	2 cut(s)	139, 187
HgaI	GACGC	4 cut(s)	25, 50, 296, 327
HhaI	GCGC	2 cut(s)	305, 336
Hin1II	CATG	3 cut(s)	82, 97, 107
Hin6I	GCGC	2 cut(s)	303, 334
HinP1I	GCGC	2 cut(s)	303, 334
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	4 cut(s)	56, 158, 176, 278
HpaII	CCGG	2 cut(s)	139, 187
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	3 cut(s)	40, 286, 317
Hpy188I	TCNGA	2 cut(s)	28, 61
Hpy8I	GTNNAC	3 cut(s)	40, 286, 317
Hpy99I	CGWCG	2 cut(s)	41, 44
HpyAV	CCTTC	1 cut(s)	124
HpyCH4V	TGCA	2 cut(s)	129, 192
HpyF10VI	GCNNNNNNNGC	4 cut(s)	135, 144, 309, 318
Hsp92II	CATG	3 cut(s)	82, 97, 107
HspAI	GCGC	2 cut(s)	303, 334
Kzo9I	GATC	1 cut(s)	237
LmnI	GCTCC	2 cut(s)	100, 269
LpnPI	CCDG	7 cut(s)	25, 134, 152, 161, 200, 242, 280
Lsp1109I	GCAGC	1 cut(s)	31
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	1 cut(s)	74
MluCI	AATT	1 cut(s)	7
MlyI	GAGTC	3 cut(s)	152, 185, 287
MmeI	TCCRAC	2 cut(s)	78, 144
MnlI	CCTC	6 cut(s)	22, 67, 148, 212, 286, 317
MseI	TTAA	1 cut(s)	343
MspI	CCGG	2 cut(s)	139, 187
MspR9I	CCNGG	1 cut(s)	149
Mva1269I	GAATGC	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	149
MvnI	CGCG	2 cut(s)	303, 334
MwoI	GCNNNNNNNGC	4 cut(s)	135, 144, 309, 318
NdeII	GATC	1 cut(s)	237
NlaIII	CATG	3 cut(s)	82, 97, 107
NlaIV	GGNNCC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	97
PciI	ACATGT	1 cut(s)	93
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PctI	GAATGC	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	1 cut(s)	46
PleI	GAGTC	3 cut(s)	152, 184, 286
PpsI	GAGTC	3 cut(s)	152, 184, 286
PscI	ACATGT	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	199
SalI	GTCGAC	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	343
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	1 cut(s)	237
SchI	GAGTC	3 cut(s)	152, 185, 287
ScrFI	CCNGG	1 cut(s)	149
SetI	ASST	5 cut(s)	33, 153, 245, 297, 328
SgrDI	CGTCGACG	1 cut(s)	38
SmlI	CTYRAG	2 cut(s)	203, 244
SmoI	CTYRAG	2 cut(s)	203, 244
Sse9I	AATT	1 cut(s)	7
StyD4I	CCNGG	1 cut(s)	147
TaqI	TCGA	3 cut(s)	39, 153, 338
TasI	AATT	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	343
Tru9I	TTAA	1 cut(s)	343
TscAI	CASTG	1 cut(s)	22
TseI	GCWGC	1 cut(s)	44
TspRI	CASTG	1 cut(s)	22
XapI	RAATTY	1 cut(s)	7
XceI	RCATGY	1 cut(s)	97
XcmI	CCANNNNNNNNNTGG	2 cut(s)	94, 169
XmiI	GTMKAC	3 cut(s)	39, 285, 316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.