Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003694

Physical Location & Seq

Genomic Coordinates Reverse (-)

21360618 .. 21360998

Gene Structure 381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0132900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGGTAAAAAGTTGTTTAAGATTTTCATCATTTCAGATGTTATATCATTAGTGTCCTCCACAACCTCAGTAATTATATTTTTGGGACTCCTCACATCACGTTATGCAGAAGATGACTTCCTCACATCTTTGCCCACAAAAATGATGATCGGTCTTTCCACTCTTTTCCTCTCGATTTCTACTATGATGATCACATTTTGTTCTGCCCTTACCATTACGATCGGTGATAATGGAAATTCTAAGACTTTCATCCGAAACCTATTGCTGGCTTTTCTTCCGATCGCCTCATTCATATGGATGCAATTTTCCCTCATCATTGAGATATTCATTGCTACTTATGGACCGGGAATATTTAACAAGAAGATCGAACGTTGGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008970 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0016298 GO:0016787 GO:0016788 GO:0034644 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0052689 GO:0071214 GO:0071478 GO:0071482 GO:0071493 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

126

Amino Acids

14.18

Weight (kDa)

9.21

Isoelectric Point (pI)

31.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGG	PF13962	3 - 72	4.8e-11	Domain of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15710 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470
malus_domestica	MD09G1051400.v1.1 MD17G1041600.v1.1
prunus_persica	Prupe.3G267400_v2.0.a1
rosa_laevigata	RLG00000008079 RLG00000021771 RLG00000021779
rosa_multiflora	Rmu_co8372247.1_g000001 Rmu_co8415085.1_g000001 Rmu_sc0003354.1_g000020 Rmu_sc0003551.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024980 Rroxscaffold_2G00083030 Rroxscaffold_5G00359110
rosa_rugosa	Rorug02G0533300.1 Rorug02G0533700 Rorug04G0132900 Rorug04G0133000
rosa_samantha	Rh2AG602500 Rh2BG615800 Rh2CG584200 Rh2DG626000 Rh2DG626900 Rh4AG193900 Rh4BG192400 Rh4CG204900 Rh4DG191600 Rh5BG374300
rosa_wichuraiana	Rw4G016500 Rw5G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	370
AcsI	RAATTY	1 cut(s)	235
AfiI	CCNNNNNNNGG	1 cut(s)	265
ApoI	RAATTY	1 cut(s)	235
AspS9I	GGNCC	1 cut(s)	341
AsuC2I	CCSGG	1 cut(s)	345
AsuHPI	GGTGA	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	341
BclI	TGATCA	1 cut(s)	189
BcnI	CCSGG	1 cut(s)	345
Bme1390I	CCNGG	1 cut(s)	345
Bme18I	GGWCC	1 cut(s)	341
BmgT120I	GGNCC	1 cut(s)	341
BmrFI	CCNGG	1 cut(s)	345
BmsI	GCATC	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	345
BsaBI	GATNNNNATC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse3DI	GCAATG	1 cut(s)	327
Bse8I	GATNNNNATC	1 cut(s)	26
BseGI	GGATG	2 cut(s)	249, 303
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	80
Bsh1285I	CGRYCG	2 cut(s)	222, 282
BsiEI	CGRYCG	2 cut(s)	222, 282
BsiSI	CCGG	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmFI	GGGAC	1 cut(s)	99
Bsp143I	GATC	5 cut(s)	147, 189, 219, 279, 363
BspCNI	CTCAG	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	327
BssMI	GATC	5 cut(s)	147, 189, 219, 279, 363
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	2 cut(s)	67, 240
BstF5I	GGATG	2 cut(s)	249, 303
BstKTI	GATC	5 cut(s)	150, 192, 222, 282, 366
BstMBI	GATC	5 cut(s)	147, 189, 219, 279, 363
BstMCI	CGRYCG	2 cut(s)	222, 282
BstSCI	CCNGG	1 cut(s)	343
BtsCI	GGATG	2 cut(s)	249, 303
Cac8I	GCNNGC	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	341
CviJI	RGCY	1 cut(s)	269
CviKI_1	RGCY	1 cut(s)	269
DdeI	CTNAG	2 cut(s)	67, 240
DpnI	GATC	5 cut(s)	149, 191, 221, 281, 365
DpnII	GATC	5 cut(s)	147, 189, 219, 279, 363
Eco47I	GGWCC	1 cut(s)	341
FaiI	YATR	7 cut(s)	44, 77, 105, 185, 293, 295, 339
FaqI	GGGAC	1 cut(s)	99
FauNDI	CATATG	1 cut(s)	293
FbaI	TGATCA	1 cut(s)	189
FokI	GGATG	2 cut(s)	236, 310
HapII	CCGG	1 cut(s)	344
HinfI	GANTC	1 cut(s)	87
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	1 cut(s)	236
Hpy188I	TCNGA	3 cut(s)	37, 254, 279
Hpy188III	TCNNGA	1 cut(s)	172
HpyCH4IV	ACGT	2 cut(s)	100, 370
HpyCH4V	TGCA	2 cut(s)	107, 301
HpyF3I	CTNAG	2 cut(s)	67, 240
HpySE526I	ACGT	2 cut(s)	100, 370
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	5 cut(s)	147, 189, 219, 279, 363
LpnPI	CCDG	2 cut(s)	251, 357
LweI	GCATC	1 cut(s)	288
MaeII	ACGT	2 cut(s)	100, 370
MalI	GATC	5 cut(s)	149, 191, 221, 281, 365
MboI	GATC	5 cut(s)	147, 189, 219, 279, 363
MboII	GAAGA	3 cut(s)	122, 266, 373
MluCI	AATT	3 cut(s)	72, 235, 302
MlyI	GAGTC	1 cut(s)	81
MnlI	CCTC	7 cut(s)	67, 76, 101, 131, 179, 295, 320
MseI	TTAA	2 cut(s)	18, 354
MslI	CAYNNNNRTG	3 cut(s)	140, 292, 296
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	345
NciI	CCSGG	1 cut(s)	345
NdeI	CATATG	1 cut(s)	293
NdeII	GATC	5 cut(s)	147, 189, 219, 279, 363
Ple19I	CGATCG	2 cut(s)	222, 282
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
Psp1406I	AACGTT	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	341
PvuI	CGATCG	2 cut(s)	222, 282
RseI	CAYNNNNRTG	3 cut(s)	140, 292, 296
SaqAI	TTAA	2 cut(s)	18, 354
Sau3AI	GATC	5 cut(s)	147, 189, 219, 279, 363
Sau96I	GGNCC	1 cut(s)	341
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	1 cut(s)	345
SetI	ASST	4 cut(s)	68, 103, 261, 373
SfaNI	GCATC	1 cut(s)	288
SgeI	CNNG	6 cut(s)	111, 184, 278, 356, 357, 370
SinI	GGWCC	1 cut(s)	341
SmiMI	CAYNNNNRTG	3 cut(s)	140, 292, 296
Sse9I	AATT	3 cut(s)	72, 235, 302
SspI	AATATT	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	343
TaiI	ACGT	2 cut(s)	103, 373
TaqI	TCGA	2 cut(s)	173, 366
TaqII	GACCGA	1 cut(s)	140
TasI	AATT	3 cut(s)	72, 235, 302
Tru1I	TTAA	2 cut(s)	18, 354
Tru9I	TTAA	2 cut(s)	18, 354
TspDTI	ATGAA	4 cut(s)	16, 238, 280, 316
VpaK11BI	GGWCC	1 cut(s)	341
XapI	RAATTY	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.