Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003694

Physical Location & Seq

Genomic Coordinates Reverse (-)

37674335 .. 37675625

Gene Structure 1291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG191600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGACAGAGGACATGGAAACCAAACACATGTTGGAGCATGACCCATCCTTCTCCAACTCGTGCATTGAATGCCGGATATGCCAGGTCGAGGACTCCATTGATGAAATGGAGTCTCCTTGCCGGTGCAACGGCACCCTCAAGTTTGCTCACCGAGATTGTATCCAGCAATGGATCAACTTGAGTTACAAGACCACTTGCGAAATTTGTAACCAGCCGTATGAGGGTGGTTATACACTACCGGCACCGCGCCCAGCACCACCGCCACGGCAGCCTACCAGGAGGGAGGCCCTGGACACTATAAGGGCTAGAAGAGCGCATGTGGCAGTAGACGCAGAGGTATATCGCGCTCGACTTAATGCGGCAAATAGTGCCATTTTAGGTCGAAGTTTTGTGTGCCGCATTGCTCCTGTCATTCTAGCTATTTTCTTTTGTGTTCTTATAGGTTATCTGTTTATACATCATCGTCATAATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008970 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0016298 GO:0016787 GO:0016788 GO:0034644 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0052689 GO:0071214 GO:0071478 GO:0071482 GO:0071493 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

158

Amino Acids

18.09

Weight (kDa)

6.64

Isoelectric Point (pI)

50.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	24 - 69	2.1e-14	RING-variant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15710 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470
malus_domestica	MD09G1051400.v1.1 MD17G1041600.v1.1
prunus_persica	Prupe.3G267400_v2.0.a1
rosa_laevigata	RLG00000008079 RLG00000021771 RLG00000021779
rosa_multiflora	Rmu_co8372247.1_g000001 Rmu_co8415085.1_g000001 Rmu_sc0003354.1_g000020 Rmu_sc0003551.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024980 Rroxscaffold_2G00083030 Rroxscaffold_5G00359110
rosa_rugosa	Rorug02G0533300.1 Rorug02G0533700 Rorug04G0132900 Rorug04G0133000
rosa_samantha	Rh2AG602500 Rh2BG615800 Rh2CG584200 Rh2DG626000 Rh2DG626900 Rh4AG193900 Rh4BG192400 Rh4CG204900 Rh4DG191600 Rh5BG374300
rosa_wichuraiana	Rw4G016500 Rw5G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	131, 241
AccI	GTMKAC	1 cut(s)	327
AccII	CGCG	2 cut(s)	247, 345
AciI	CCGC	4 cut(s)	245, 260, 359, 397
AclWI	GGATC	1 cut(s)	179
AcsI	RAATTY	1 cut(s)	201
AfiI	CCNNNNNNNGG	2 cut(s)	88, 221
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	1 cut(s)	68
AjnI	CCWGG	3 cut(s)	81, 275, 288
AluBI	AGCT	1 cut(s)	419
AluI	AGCT	1 cut(s)	419
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	1 cut(s)	268
ApoI	RAATTY	1 cut(s)	201
AspLEI	GCGC	3 cut(s)	249, 316, 347
AspS9I	GGNCC	1 cut(s)	286
AsuHPI	GGTGA	1 cut(s)	140
BanI	GGYRCC	2 cut(s)	131, 241
BauI	CACGAG	1 cut(s)	58
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	1 cut(s)	52
BceAI	ACGGC	3 cut(s)	145, 199, 281
BciT130I	CCWGG	3 cut(s)	83, 277, 290
BciVI	GTATCC	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	2 cut(s)	306, 416
BfuI	GTATCC	1 cut(s)	170
BisI	GCNGC	3 cut(s)	269, 360, 397
BlsI	GCNGC	3 cut(s)	270, 361, 398
Bme1390I	CCNGG	3 cut(s)	83, 277, 290
BmgT120I	GGNCC	1 cut(s)	286
BmiI	GGNNCC	2 cut(s)	133, 243
BmrFI	CCNGG	3 cut(s)	83, 277, 290
BpuEI	CTTGAG	2 cut(s)	122, 199
BsaJI	CCNNGG	2 cut(s)	263, 288
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 221
Bse118I	RCCGGY	2 cut(s)	120, 238
Bse3DI	GCAATG	2 cut(s)	173, 399
BseBI	CCWGG	3 cut(s)	83, 277, 290
BseDI	CCNNGG	2 cut(s)	263, 288
BseGI	GGATG	1 cut(s)	44
BseLI	CCNNNNNNNGG	2 cut(s)	88, 221
BseMI	GCAATG	2 cut(s)	173, 399
BseXI	GCAGC	1 cut(s)	280
BseYI	CCCAGC	1 cut(s)	250
Bsh1236I	CGCG	2 cut(s)	247, 345
BshFI	GGCC	1 cut(s)	287
BshNI	GGYRCC	2 cut(s)	131, 241
BsiSI	CCGG	3 cut(s)	73, 121, 239
BslI	CCNNNNNNNGG	2 cut(s)	88, 221
BsmAI	GTCTC	1 cut(s)	117
BsmI	GAATGC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	287
Bsp143I	GATC	1 cut(s)	171
BspACI	CCGC	4 cut(s)	245, 260, 359, 397
BspANI	GGCC	1 cut(s)	287
BspFNI	CGCG	2 cut(s)	247, 345
BspLI	GGNNCC	2 cut(s)	133, 243
BspPI	GGATC	1 cut(s)	179
BspQI	GCTCTTC	1 cut(s)	304
BspT107I	GGYRCC	2 cut(s)	131, 241
BsrDI	GCAATG	2 cut(s)	173, 399
BsrFI	RCCGGY	2 cut(s)	120, 238
BssAI	RCCGGY	2 cut(s)	120, 238
BssECI	CCNNGG	2 cut(s)	263, 288
BssMI	GATC	1 cut(s)	171
BssSI	CACGAG	1 cut(s)	58
Bst2BI	CACGAG	1 cut(s)	58
Bst2UI	CCWGG	3 cut(s)	83, 277, 290
Bst6I	CTCTTC	1 cut(s)	304
BstAPI	GCANNNNNTGC	2 cut(s)	69, 368
BstDSI	CCRYGG	1 cut(s)	263
BstF5I	GGATG	1 cut(s)	44
BstFNI	CGCG	2 cut(s)	247, 345
BstHHI	GCGC	3 cut(s)	249, 316, 347
BstKTI	GATC	1 cut(s)	174
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	171
BstMWI	GCNNNNNNNGC	7 cut(s)	69, 78, 268, 311, 320, 329, 368
BstNI	CCWGG	3 cut(s)	83, 277, 290
BstNSI	RCATGY	2 cut(s)	31, 320
BstSCI	CCNGG	3 cut(s)	81, 275, 288
BstUI	CGCG	2 cut(s)	247, 345
BstV1I	GCAGC	1 cut(s)	280
BsuI	GTATCC	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	287
BtgI	CCRYGG	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	44
CfoI	GCGC	3 cut(s)	249, 316, 347
Cfr10I	RCCGGY	2 cut(s)	120, 238
Cfr13I	GGNCC	1 cut(s)	286
CseI	GACGC	1 cut(s)	338
CviAII	CATG	4 cut(s)	13, 28, 38, 317
CviJI	RGCY	5 cut(s)	214, 271, 287, 305, 419
CviKI_1	RGCY	5 cut(s)	214, 271, 287, 305, 419
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
Eam1104I	CTCTTC	1 cut(s)	304
EarI	CTCTTC	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	286
EcoRII	CCWGG	3 cut(s)	81, 275, 288
FaeI	CATG	4 cut(s)	16, 31, 41, 320
FatI	CATG	4 cut(s)	12, 27, 37, 316
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	3 cut(s)	269, 360, 397
FokI	GGATG	1 cut(s)	31
Fsp4HI	GCNGC	3 cut(s)	269, 360, 397
FspBI	CTAG	2 cut(s)	306, 416
GlaI	GCGC	3 cut(s)	248, 315, 346
GluI	GCNGC	3 cut(s)	269, 360, 397
GsaI	CCCAGC	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	3 cut(s)	73, 121, 239
HgaI	GACGC	1 cut(s)	338
HhaI	GCGC	3 cut(s)	249, 316, 347
Hin1II	CATG	4 cut(s)	16, 31, 41, 320
Hin6I	GCGC	3 cut(s)	247, 314, 345
HinP1I	GCGC	3 cut(s)	247, 314, 345
HinfI	GANTC	2 cut(s)	92, 110
HpaII	CCGG	3 cut(s)	73, 121, 239
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	328
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	1 cut(s)	58
HpyCH4V	TGCA	2 cut(s)	63, 126
HpyF10VI	GCNNNNNNNGC	7 cut(s)	69, 78, 268, 311, 320, 329, 368
Hsp92II	CATG	4 cut(s)	16, 31, 41, 320
HspAI	GCGC	3 cut(s)	247, 314, 345
Kzo9I	GATC	1 cut(s)	171
LguI	GCTCTTC	1 cut(s)	304
LmnI	GCTCC	2 cut(s)	34, 409
Lsp1109I	GCAGC	1 cut(s)	280
MaeI	CTAG	2 cut(s)	306, 416
MaeIII	GTNAC	2 cut(s)	182, 206
MalI	GATC	1 cut(s)	173
MboI	GATC	1 cut(s)	171
MboII	GAAGA	1 cut(s)	321
MluCI	AATT	1 cut(s)	201
MlyI	GAGTC	2 cut(s)	86, 119
MmeI	TCCRAC	2 cut(s)	12, 78
MnlI	CCTC	6 cut(s)	82, 146, 214, 273, 277, 328
MseI	TTAA	1 cut(s)	354
MspI	CCGG	3 cut(s)	73, 121, 239
MspR9I	CCNGG	3 cut(s)	83, 277, 290
Mva1269I	GAATGC	1 cut(s)	74
MvaI	CCWGG	3 cut(s)	83, 277, 290
MvnI	CGCG	2 cut(s)	247, 345
MwoI	GCNNNNNNNGC	7 cut(s)	69, 78, 268, 311, 320, 329, 368
NdeII	GATC	1 cut(s)	171
NlaIII	CATG	4 cut(s)	16, 31, 41, 320
NlaIV	GGNNCC	2 cut(s)	133, 243
NspI	RCATGY	2 cut(s)	31, 320
PciI	ACATGT	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	304
PctI	GAATGC	1 cut(s)	74
PkrI	GCNGC	3 cut(s)	270, 361, 398
PleI	GAGTC	2 cut(s)	86, 118
PpsI	GAGTC	2 cut(s)	86, 118
PscI	ACATGT	1 cut(s)	27
Psp6I	CCWGG	3 cut(s)	81, 275, 288
PspFI	CCCAGC	1 cut(s)	250
PspGI	CCWGG	3 cut(s)	81, 275, 288
PspN4I	GGNNCC	2 cut(s)	133, 243
PspPI	GGNCC	1 cut(s)	286
SapI	GCTCTTC	1 cut(s)	304
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	3 cut(s)	269, 360, 397
Sau3AI	GATC	1 cut(s)	171
Sau96I	GGNCC	1 cut(s)	286
SchI	GAGTC	2 cut(s)	86, 119
ScrFI	CCNGG	3 cut(s)	83, 277, 290
SetI	ASST	5 cut(s)	87, 339, 382, 421, 445
SmlI	CTYRAG	2 cut(s)	137, 178
SmoI	CTYRAG	2 cut(s)	137, 178
Sse9I	AATT	1 cut(s)	201
SsiI	CCGC	4 cut(s)	245, 260, 359, 397
SspMI	CTAG	2 cut(s)	306, 416
StyD4I	CCNGG	3 cut(s)	81, 275, 288
TaqI	TCGA	3 cut(s)	87, 349, 382
TasI	AATT	1 cut(s)	201
TauI	GCSGC	2 cut(s)	362, 399
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TseI	GCWGC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	117
XapI	RAATTY	1 cut(s)	201
XceI	RCATGY	2 cut(s)	31, 320
XcmI	CCANNNNNNNNNTGG	2 cut(s)	28, 103
XmiI	GTMKAC	1 cut(s)	327
XspI	CTAG	2 cut(s)	306, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.