Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8372247.1

Orthogroup ID

OG0003694

Physical Location & Seq

Genomic Coordinates Reverse (-)

516 .. 1113

Gene Structure 598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8372247.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgccagaggacgagcgatcctcttccgtctccttgacgactgttttgagccccgaatgccgaatctgtcagactgaggactccatcgaccacacggaggctccttgccggtgcaatggcaccctaaagtttgcgcacagagattgtatccagcgatgggtcaattctcgtttcaaggctacttgtgagatctgtaaccagcagtatgagggtggttatagagtaacggtgccaccacctgcaacgccgccgcagcctacgaggagggagattgaggagattaggagggtgatggaggaggctgaaggttgcatgcagcggcagcaagagcagaattatacctcgctcgacttaatgcggcaaacaataccgttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008970 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0016298 GO:0016787 GO:0016788 GO:0034644 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0052689 GO:0071214 GO:0071478 GO:0071482 GO:0071493 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

125

Amino Acids

14.48

Weight (kDa)

5.23

Isoelectric Point (pI)

79.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15710 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470
malus_domestica	MD09G1051400.v1.1 MD17G1041600.v1.1
prunus_persica	Prupe.3G267400_v2.0.a1
rosa_laevigata	RLG00000008079 RLG00000021771 RLG00000021779
rosa_multiflora	Rmu_co8372247.1_g000001 Rmu_co8415085.1_g000001 Rmu_sc0003354.1_g000020 Rmu_sc0003551.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024980 Rroxscaffold_2G00083030 Rroxscaffold_5G00359110
rosa_rugosa	Rorug02G0533300.1 Rorug02G0533700 Rorug04G0132900 Rorug04G0133000
rosa_samantha	Rh2AG602500 Rh2BG615800 Rh2CG584200 Rh2DG626000 Rh2DG626900 Rh4AG193900 Rh4BG192400 Rh4CG204900 Rh4DG191600 Rh5BG374300
rosa_wichuraiana	Rw4G016500 Rw5G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	247
Acc16I	TGCGCA	1 cut(s)	135
Acc36I	ACCTGC	1 cut(s)	247
AccB1I	GGYRCC	2 cut(s)	119, 229
AciI	CCGC	4 cut(s)	248, 251, 319, 358
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	324
AfiI	CCNNNNNNNGG	2 cut(s)	97, 157
AgsI	TTSAA	1 cut(s)	175
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	3 cut(s)	253, 316, 322
ArsI	GACNNNNNNTTYG	2 cut(s)	28, 60
AspLEI	GCGC	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	301
BanI	GGYRCC	2 cut(s)	119, 229
BanII	GRGCYC	1 cut(s)	53
BbvI	GCAGC	3 cut(s)	265, 328, 334
BccI	CCATC	3 cut(s)	92, 150, 286
BciVI	GTATCC	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	34
BfuAI	ACCTGC	1 cut(s)	247
BfuI	GTATCC	1 cut(s)	158
BglII	AGATCT	1 cut(s)	189
BisI	GCNGC	7 cut(s)	248, 251, 254, 317, 320, 323, 359
BlsI	GCNGC	7 cut(s)	249, 252, 255, 318, 321, 324, 360
BmiI	GGNNCC	3 cut(s)	102, 121, 231
BplI	GAGNNNNNCTC	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	85, 115
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 157
Bse118I	RCCGGY	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	2 cut(s)	97, 157
BseMI	GCAATG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	66
BseRI	GAGGAG	3 cut(s)	277, 290, 311
BseXI	GCAGC	3 cut(s)	265, 328, 334
BshNI	GGYRCC	2 cut(s)	119, 229
BsiSI	CCGG	1 cut(s)	109
BslI	CCNNNNNNNGG	2 cut(s)	97, 157
BsmAI	GTCTC	1 cut(s)	34
BsmBI	CGTCTC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	2 cut(s)	17, 189
BspACI	CCGC	4 cut(s)	248, 251, 319, 358
BspCNI	CTCAG	1 cut(s)	67
BspLI	GGNNCC	3 cut(s)	102, 121, 231
BspMI	ACCTGC	1 cut(s)	247
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	2 cut(s)	119, 229
BsrDI	GCAATG	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	108
BssAI	RCCGGY	1 cut(s)	108
BssMI	GATC	2 cut(s)	17, 189
Bst4CI	ACNGT	3 cut(s)	43, 229, 372
Bst6I	CTCTTC	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	314
BstDEI	CTNAG	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	2 cut(s)	20, 192
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	2 cut(s)	17, 189
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 253, 322, 328
BstNSI	RCATGY	1 cut(s)	316
BstV1I	GCAGC	3 cut(s)	265, 328, 334
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
BsuI	GTATCC	1 cut(s)	158
BtgZI	GCGATG	1 cut(s)	169
BveI	ACCTGC	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	314
CfoI	GCGC	1 cut(s)	136
Cfr10I	RCCGGY	1 cut(s)	108
CviAII	CATG	1 cut(s)	313
CviJI	RGCY	5 cut(s)	51, 101, 179, 256, 302
CviKI_1	RGCY	5 cut(s)	51, 101, 179, 256, 302
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	2 cut(s)	19, 191
DpnII	GATC	2 cut(s)	17, 189
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	53
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	1 cut(s)	316
FaiI	YATR	4 cut(s)	207, 219, 314, 339
FatI	CATG	1 cut(s)	312
Fnu4HI	GCNGC	7 cut(s)	248, 251, 254, 317, 320, 323, 359
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	7 cut(s)	248, 251, 254, 317, 320, 323, 359
FspI	TGCGCA	1 cut(s)	135
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	7 cut(s)	248, 251, 254, 317, 320, 323, 359
HapII	CCGG	1 cut(s)	109
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	1 cut(s)	316
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HinfI	GANTC	2 cut(s)	63, 80
HpaII	CCGG	1 cut(s)	109
HphI	GGTGA	1 cut(s)	301
Hpy188I	TCNGA	1 cut(s)	72
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	3 cut(s)	43, 229, 372
HpyCH4V	TGCA	4 cut(s)	114, 242, 312, 316
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 253, 322, 328
HpyF3I	CTNAG	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	316
HspAI	GCGC	1 cut(s)	134
Kzo9I	GATC	2 cut(s)	17, 189
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	5 cut(s)	18, 122, 164, 212, 252
Lsp1109I	GCAGC	3 cut(s)	265, 328, 334
MaeIII	GTNAC	2 cut(s)	194, 223
MalI	GATC	2 cut(s)	19, 191
MboI	GATC	2 cut(s)	17, 189
MboII	GAAGA	1 cut(s)	15
MflI	RGATCY	1 cut(s)	189
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	2 cut(s)	163, 334
MlyI	GAGTC	1 cut(s)	74
MseI	TTAA	2 cut(s)	353, 376
MspA1I	CMGCKG	1 cut(s)	319
MspI	CCGG	1 cut(s)	109
Mva1269I	GAATGC	1 cut(s)	62
MwoI	GCNNNNNNNGC	4 cut(s)	57, 253, 322, 328
NdeII	GATC	2 cut(s)	17, 189
NlaIII	CATG	1 cut(s)	316
NlaIV	GGNNCC	3 cut(s)	102, 121, 231
NsbI	TGCGCA	1 cut(s)	135
NspI	RCATGY	1 cut(s)	316
PaeI	GCATGC	1 cut(s)	316
PaqCI	CACCTGC	1 cut(s)	247
PctI	GAATGC	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	63
PkrI	GCNGC	7 cut(s)	249, 252, 255, 318, 321, 324, 360
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PspN4I	GGNNCC	3 cut(s)	102, 121, 231
PsuI	RGATCY	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	353, 376
SatI	GCNGC	7 cut(s)	248, 251, 254, 317, 320, 323, 359
Sau3AI	GATC	2 cut(s)	17, 189
SchI	GAGTC	1 cut(s)	74
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	3 cut(s)	241, 310, 344
SphI	GCATGC	1 cut(s)	316
Sse9I	AATT	2 cut(s)	163, 334
SsiI	CCGC	4 cut(s)	248, 251, 319, 358
TaaI	ACNGT	3 cut(s)	43, 229, 372
TaqI	TCGA	2 cut(s)	87, 348
TasI	AATT	2 cut(s)	163, 334
TauI	GCSGC	4 cut(s)	250, 253, 322, 361
TfiI	GAWTC	1 cut(s)	63
Tru1I	TTAA	2 cut(s)	353, 376
Tru9I	TTAA	2 cut(s)	353, 376
TseI	GCWGC	3 cut(s)	253, 316, 322
TspGWI	ACGGA	2 cut(s)	16, 110
XceI	RCATGY	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.