Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003694

Physical Location & Seq

Genomic Coordinates Reverse (-)

83046734 .. 83047409

Gene Structure 676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG602500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGAGAGTTCAAGCAGTGAAAGCTTGGAGGTGTCAGTCTCCACCGTCGCGGAATCAGTCAGAGAGGAAGCTGGCAACATGCCAGAGGACGAGCGATCCTCTTCCGCCTCCTTGACGACTGTTTTGAGCCCCGAATGCCGAATCTGTCAGACGGAGGACTCCATCGACCACACGGAGGCTCCTTGCCGGTGCAATGGCACCCTAAAGTTTGCGCACAGAGATTGTATCCAACGATGGGTCAATTCTCGTTTCAAGACTACTTGTGAGATCTGTAACCAGCAGTATGAGGGTGGTTATAGAGTAACGGTGCCACCACCTGCAACGCCGCCGCAGCCTACGAGGAGGGAGATTGAGGAGATTAGGAGGGTGATGGAGGAGGCTGAAGGTTGCATGCAGCGGCAGCAAGAGCAGAATTATACCTCGCTCGACTTAATGCGGCAAACAATACCGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008970 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0016298 GO:0016787 GO:0016788 GO:0034644 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0052689 GO:0071214 GO:0071478 GO:0071482 GO:0071493 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

151

Amino Acids

17.17

Weight (kDa)

4.79

Isoelectric Point (pI)

77.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	46 - 91	2.6e-13	RING-variant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15710 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470
malus_domestica	MD09G1051400.v1.1 MD17G1041600.v1.1
prunus_persica	Prupe.3G267400_v2.0.a1
rosa_laevigata	RLG00000008079 RLG00000021771 RLG00000021779
rosa_multiflora	Rmu_co8372247.1_g000001 Rmu_co8415085.1_g000001 Rmu_sc0003354.1_g000020 Rmu_sc0003551.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024980 Rroxscaffold_2G00083030 Rroxscaffold_5G00359110
rosa_rugosa	Rorug02G0533300.1 Rorug02G0533700 Rorug04G0132900 Rorug04G0133000
rosa_samantha	Rh2AG602500 Rh2BG615800 Rh2CG584200 Rh2DG626000 Rh2DG626900 Rh4AG193900 Rh4BG192400 Rh4CG204900 Rh4DG191600 Rh5BG374300
rosa_wichuraiana	Rw4G016500 Rw5G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	325
Acc16I	TGCGCA	1 cut(s)	213
Acc36I	ACCTGC	1 cut(s)	325
AccB1I	GGYRCC	2 cut(s)	197, 307
AccII	CGCG	1 cut(s)	50
AciI	CCGC	6 cut(s)	50, 105, 326, 329, 397, 436
AclWI	GGATC	1 cut(s)	90
AcuI	CTGAAG	1 cut(s)	402
AfiI	CCNNNNNNNGG	2 cut(s)	175, 235
AgsI	TTSAA	2 cut(s)	12, 253
AluBI	AGCT	2 cut(s)	24, 71
AluI	AGCT	2 cut(s)	24, 71
Alw26I	GTCTC	1 cut(s)	43
AlwI	GGATC	1 cut(s)	90
ApeKI	GCWGC	3 cut(s)	331, 394, 400
ArsI	GACNNNNNNTTYG	2 cut(s)	106, 138
AspLEI	GCGC	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	379
BanI	GGYRCC	2 cut(s)	197, 307
BanII	GRGCYC	1 cut(s)	131
BbvI	GCAGC	3 cut(s)	343, 406, 412
BccI	CCATC	3 cut(s)	170, 228, 364
BciVI	GTATCC	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	43
BfuAI	ACCTGC	1 cut(s)	325
BfuI	GTATCC	1 cut(s)	236
BglII	AGATCT	1 cut(s)	267
BisI	GCNGC	7 cut(s)	326, 329, 332, 395, 398, 401, 437
BlsI	GCNGC	7 cut(s)	327, 330, 333, 396, 399, 402, 438
BmiI	GGNNCC	3 cut(s)	180, 199, 309
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BsaXI	ACNNNNNCTCC	2 cut(s)	163, 193
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 235
Bse118I	RCCGGY	1 cut(s)	186
Bse3DI	GCAATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	2 cut(s)	175, 235
BseMI	GCAATG	1 cut(s)	199
BseRI	GAGGAG	3 cut(s)	355, 368, 389
BseXI	GCAGC	3 cut(s)	343, 406, 412
Bsh1236I	CGCG	1 cut(s)	50
BshNI	GGYRCC	2 cut(s)	197, 307
BsiSI	CCGG	1 cut(s)	187
BslI	CCNNNNNNNGG	2 cut(s)	175, 235
BsmAI	GTCTC	1 cut(s)	43
BsmI	GAATGC	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	2 cut(s)	95, 267
BspACI	CCGC	6 cut(s)	50, 105, 326, 329, 397, 436
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	3 cut(s)	180, 199, 309
BspMI	ACCTGC	1 cut(s)	325
BspPI	GGATC	1 cut(s)	90
BspT107I	GGYRCC	2 cut(s)	197, 307
BsrDI	GCAATG	1 cut(s)	199
BsrFI	RCCGGY	1 cut(s)	186
BssAI	RCCGGY	1 cut(s)	186
BssMI	GATC	2 cut(s)	95, 267
Bst4CI	ACNGT	4 cut(s)	46, 121, 307, 450
Bst6I	CTCTTC	1 cut(s)	106
BstC8I	GCNNGC	2 cut(s)	73, 392
BstFNI	CGCG	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	2 cut(s)	98, 270
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	2 cut(s)	95, 267
BstMWI	GCNNNNNNNGC	5 cut(s)	21, 135, 331, 400, 406
BstNSI	RCATGY	2 cut(s)	82, 394
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	3 cut(s)	343, 406, 412
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
BsuI	GTATCC	1 cut(s)	236
BtsI	GCAGTG	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	22
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	2 cut(s)	73, 392
CfoI	GCGC	1 cut(s)	214
Cfr10I	RCCGGY	1 cut(s)	186
CviAII	CATG	2 cut(s)	79, 391
CviJI	RGCY	6 cut(s)	24, 71, 129, 179, 334, 380
CviKI_1	RGCY	6 cut(s)	24, 71, 129, 179, 334, 380
DpnI	GATC	2 cut(s)	97, 269
DpnII	GATC	2 cut(s)	95, 267
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
EciI	GGCGGA	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	131
FaeI	CATG	2 cut(s)	82, 394
FaiI	YATR	5 cut(s)	80, 285, 297, 392, 417
FatI	CATG	2 cut(s)	78, 390
Fnu4HI	GCNGC	7 cut(s)	326, 329, 332, 395, 398, 401, 437
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	7 cut(s)	326, 329, 332, 395, 398, 401, 437
FspI	TGCGCA	1 cut(s)	213
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	7 cut(s)	326, 329, 332, 395, 398, 401, 437
HapII	CCGG	1 cut(s)	187
HhaI	GCGC	1 cut(s)	214
Hin1II	CATG	2 cut(s)	82, 394
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HindIII	AAGCTT	1 cut(s)	22
HinfI	GANTC	3 cut(s)	53, 141, 158
HpaII	CCGG	1 cut(s)	187
HphI	GGTGA	1 cut(s)	379
Hpy188I	TCNGA	2 cut(s)	62, 150
Hpy188III	TCNNGA	1 cut(s)	253
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	1 cut(s)	377
HpyCH4III	ACNGT	4 cut(s)	46, 121, 307, 450
HpyCH4V	TGCA	4 cut(s)	192, 320, 390, 394
HpyF10VI	GCNNNNNNNGC	5 cut(s)	21, 135, 331, 400, 406
Hsp92II	CATG	2 cut(s)	82, 394
HspAI	GCGC	1 cut(s)	212
Kzo9I	GATC	2 cut(s)	95, 267
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	5 cut(s)	57, 96, 200, 290, 330
Lsp1109I	GCAGC	3 cut(s)	343, 406, 412
MaeIII	GTNAC	2 cut(s)	272, 301
MalI	GATC	2 cut(s)	97, 269
MboI	GATC	2 cut(s)	95, 267
MboII	GAAGA	1 cut(s)	93
MflI	RGATCY	1 cut(s)	267
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	2 cut(s)	241, 412
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	253
MseI	TTAA	2 cut(s)	431, 454
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	1 cut(s)	187
Mva1269I	GAATGC	1 cut(s)	140
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	5 cut(s)	21, 135, 331, 400, 406
NdeII	GATC	2 cut(s)	95, 267
NlaIII	CATG	2 cut(s)	82, 394
NlaIV	GGNNCC	3 cut(s)	180, 199, 309
NsbI	TGCGCA	1 cut(s)	213
NspI	RCATGY	2 cut(s)	82, 394
PaeI	GCATGC	1 cut(s)	394
PaqCI	CACCTGC	1 cut(s)	325
PctI	GAATGC	1 cut(s)	140
PfeI	GAWTC	2 cut(s)	53, 141
PkrI	GCNGC	7 cut(s)	327, 330, 333, 396, 399, 402, 438
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PspN4I	GGNNCC	3 cut(s)	180, 199, 309
PsuI	RGATCY	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	431, 454
SatI	GCNGC	7 cut(s)	326, 329, 332, 395, 398, 401, 437
Sau3AI	GATC	2 cut(s)	95, 267
SchI	GAGTC	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	6 cut(s)	26, 33, 73, 319, 388, 422
SphI	GCATGC	1 cut(s)	394
Sse9I	AATT	2 cut(s)	241, 412
SsiI	CCGC	6 cut(s)	50, 105, 326, 329, 397, 436
TaaI	ACNGT	4 cut(s)	46, 121, 307, 450
TaqI	TCGA	2 cut(s)	165, 426
TasI	AATT	2 cut(s)	241, 412
TauI	GCSGC	4 cut(s)	328, 331, 400, 439
TfiI	GAWTC	2 cut(s)	53, 141
Tru1I	TTAA	2 cut(s)	431, 454
Tru9I	TTAA	2 cut(s)	431, 454
TscAI	CASTG	1 cut(s)	22
TseI	GCWGC	3 cut(s)	331, 394, 400
TspGWI	ACGGA	2 cut(s)	167, 188
TspRI	CASTG	1 cut(s)	22
XceI	RCATGY	2 cut(s)	82, 394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.