Rh2CG584200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0003694
Physical Location & Seq
Forward (+)
76188784 .. 76189342
559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG584200.1

Sequence Viewer

Length: 345 bp
ATGTGCGAAATCTGTAAACAGCCATATGAAGGTGGGTTTACCATAACAATACCACCCCCGCCTACTCCGGAGGAGTTGGAAGCTCAAATGGCACGAGAAGAGGCTGAGAGGGAGACCGAAATAGCAAGGGAAGACGCTCGAAGAGCAACAGGGGCGGCATTAGCAGCTATATTGCCGGATTTGAATAACGCCGCTATTGGTGAAAGTCTTGTACGCCGGATTTCTTCTATCCTTCGTGCTGCTATATACATTATTTTCATGGTGACTCTTATAACTGGCCTCCTTGACTTTCGACCATCTTCACCTTCACCCCAGCCCCCAGCTCCGGATCCATTACCTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.4

Weight (kDa)

4.59

Isoelectric Point (pI)

74.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 272
AccIII TCCGGA 2 cut(s) 67, 325
AciI CCGC 3 cut(s) 59, 155, 192
AclWI GGATC 2 cut(s) 323, 336
AfaI GTAC 1 cut(s) 213
AfiI CCNNNNNNNGG 2 cut(s) 29, 325
AgsI TTSAA 1 cut(s) 184
AluBI AGCT 3 cut(s) 83, 167, 323
AluI AGCT 3 cut(s) 83, 167, 323
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 2 cut(s) 323, 336
Aor13HI TCCGGA 2 cut(s) 67, 325
AoxI GGCC 1 cut(s) 277
ApeKI GCWGC 2 cut(s) 164, 239
AsuHPI GGTGA 4 cut(s) 212, 274, 294, 300
BamHI GGATCC 1 cut(s) 328
BauI CACGAG 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 138
BbvI GCAGC 2 cut(s) 176, 226
BccI CCATC 1 cut(s) 304
BcoDI GTCTC 1 cut(s) 107
BisI GCNGC 4 cut(s) 156, 165, 192, 240
BlsI GCNGC 4 cut(s) 157, 166, 193, 241
BmiI GGNNCC 1 cut(s) 330
BpiI GAAGAC 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 107
BsaWI WCCGGW 2 cut(s) 67, 325
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 325
Bse1I ACTGG 1 cut(s) 280
BseAI TCCGGA 2 cut(s) 67, 325
BseLI CCNNNNNNNGG 2 cut(s) 29, 325
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 280
BseRI GAGGAG 1 cut(s) 86
BseXI GCAGC 2 cut(s) 176, 226
BseYI CCCAGC 2 cut(s) 312, 319
BshFI GGCC 1 cut(s) 279
BsiSI CCGG 4 cut(s) 68, 176, 217, 326
BslI CCNNNNNNNGG 2 cut(s) 29, 325
BsmAI GTCTC 1 cut(s) 107
BsnI GGCC 1 cut(s) 279
Bso31I GGTCTC 1 cut(s) 107
Bsp13I TCCGGA 2 cut(s) 67, 325
Bsp143I GATC 1 cut(s) 328
BspACI CCGC 3 cut(s) 59, 155, 192
BspANI GGCC 1 cut(s) 279
BspCNI CTCAG 1 cut(s) 97
BspEI TCCGGA 2 cut(s) 67, 325
BspLI GGNNCC 1 cut(s) 330
BspPI GGATC 2 cut(s) 323, 336
BspQI GCTCTTC 1 cut(s) 136
BspTNI GGTCTC 1 cut(s) 107
BsrI ACTGG 1 cut(s) 280
BssMI GATC 1 cut(s) 328
BssSI CACGAG 1 cut(s) 93
Bst2BI CACGAG 1 cut(s) 93
Bst6I CTCTTC 2 cut(s) 93, 136
BstDEI CTNAG 1 cut(s) 105
BstKTI GATC 1 cut(s) 331
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 1 cut(s) 328
BstMWI GCNNNNNNNGC 5 cut(s) 89, 143, 152, 161, 164
BstV1I GCAGC 2 cut(s) 176, 226
BstV2I GAAGAC 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BsuRI GGCC 1 cut(s) 279
CseI GACGC 1 cut(s) 143
Csp6I GTAC 1 cut(s) 212
CviAII CATG 1 cut(s) 259
CviJI RGCY 7 cut(s) 22, 83, 104, 167, 279, 316, 323
CviKI_1 RGCY 7 cut(s) 22, 83, 104, 167, 279, 316, 323
CviQI GTAC 1 cut(s) 212
DdeI CTNAG 1 cut(s) 105
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
Eam1104I CTCTTC 2 cut(s) 93, 136
EarI CTCTTC 2 cut(s) 93, 136
Eco31I GGTCTC 1 cut(s) 107
FaeI CATG 1 cut(s) 262
FaiI YATR 8 cut(s) 25, 27, 44, 170, 245, 247, 260, 272
FatI CATG 1 cut(s) 258
FauI CCCGC 1 cut(s) 66
FauNDI CATATG 1 cut(s) 25
Fnu4HI GCNGC 4 cut(s) 156, 165, 192, 240
Fsp4HI GCNGC 4 cut(s) 156, 165, 192, 240
GluI GCNGC 4 cut(s) 156, 165, 192, 240
GsaI CCCAGC 2 cut(s) 316, 323
HaeIII GGCC 1 cut(s) 279
HapII CCGG 4 cut(s) 68, 176, 217, 326
HgaI GACGC 1 cut(s) 143
Hin1II CATG 1 cut(s) 262
HinfI GANTC 1 cut(s) 265
HpaII CCGG 4 cut(s) 68, 176, 217, 326
HphI GGTGA 4 cut(s) 212, 274, 294, 300
Hpy166II GTNNAC 2 cut(s) 17, 39
Hpy188III TCNNGA 2 cut(s) 68, 326
Hpy8I GTNNAC 2 cut(s) 17, 39
HpyAV CCTTC 3 cut(s) 23, 242, 315
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 143, 152, 161, 164
HpyF3I CTNAG 1 cut(s) 105
Hsp92II CATG 1 cut(s) 262
Kpn2I TCCGGA 2 cut(s) 67, 325
Kzo9I GATC 1 cut(s) 328
LguI GCTCTTC 1 cut(s) 136
LmnI GCTCC 1 cut(s) 328
LpnPI CCDG 8 cut(s) 81, 135, 189, 230, 261, 326, 333, 339
Lsp1109I GCAGC 2 cut(s) 176, 226
MaeIII GTNAC 1 cut(s) 262
MalI GATC 1 cut(s) 330
MboI GATC 1 cut(s) 328
MboII GAAGA 5 cut(s) 110, 143, 153, 216, 291
MflI RGATCY 1 cut(s) 328
MlyI GAGTC 1 cut(s) 259
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 4 cut(s) 64, 94, 102, 290
MroI TCCGGA 2 cut(s) 67, 325
MspI CCGG 4 cut(s) 68, 176, 217, 326
MwoI GCNNNNNNNGC 5 cut(s) 89, 143, 152, 161, 164
NdeI CATATG 1 cut(s) 25
NdeII GATC 1 cut(s) 328
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 1 cut(s) 330
NmuCI GTSAC 1 cut(s) 262
PciSI GCTCTTC 1 cut(s) 136
PkrI GCNGC 4 cut(s) 157, 166, 193, 241
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
PsiI TTATAA 1 cut(s) 272
PspFI CCCAGC 2 cut(s) 312, 319
PspN4I GGNNCC 1 cut(s) 330
PsuI RGATCY 1 cut(s) 328
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
SapI GCTCTTC 1 cut(s) 136
SatI GCNGC 4 cut(s) 156, 165, 192, 240
Sau3AI GATC 1 cut(s) 328
SchI GAGTC 1 cut(s) 259
SetI ASST 6 cut(s) 34, 85, 169, 307, 325, 340
SsiI CCGC 3 cut(s) 59, 155, 192
TaqI TCGA 2 cut(s) 139, 292
TaqII GACCGA 1 cut(s) 131
TauI GCSGC 2 cut(s) 158, 194
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 2 cut(s) 164, 239
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 2 cut(s) 42, 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.