Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002917

Physical Location & Seq

Genomic Coordinates Reverse (-)

16703991 .. 16705403

Gene Structure 1413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCCACTAGCGGAACGAGTCAGCTTCTTGACAGAACAAATTGCTTATTACACCGGTCCAACAGTGGGAGGCCTTCTAAATGCGACCTGTGGCAATGCTACAGAGCTCATAATTGCAATATTTGCCCTAGCCCAACACAAAGTAGCAGTGGTGAAGTACTCTCTACTGGGTTCCATTCTCTCAAACCTTCTCTTAGTCCTCGGCACTTCTCTCTTTTGTGGTGGCATTGCCAACATGAAAAAAGAACAAAAATATGACAGGAGACAAGCTGATGTGAACTCCCTCATGCTGCTTCTGGCTCTGTTGTGCCACTTGCTGCCAATGCTGTTCACGTTTGCTGCTGCAGGGAGCTCTACTGGTGTGGGAGTGGACTCCACACTCCATTTGTCCAGAGCCAGCAGCACTGTGATGCTCTTGGCTTACGCTGCATACATAGTCTTCCAGCTGTGGACACACCGCGAATTATTTGAAGCTCAGGAGTGTGGGAAAATGATGATGTTGCTGAAGAAACACCTGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006793 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006882 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0015075 GO:0015077 GO:0015078 GO:0015085 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015368 GO:0015369 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0031090 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046916 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051139 GO:0051179 GO:0051234 GO:0051592 GO:0051704 GO:0051707 GO:0055062 GO:0055065 GO:0055069 GO:0055071 GO:0055074 GO:0055076 GO:0055080 GO:0055081 GO:0055082 GO:0055083 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0072503 GO:0072505 GO:0072506 GO:0072507 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099402 GO:0099516 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

174

Amino Acids

18.86

Weight (kDa)

8.71

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_Ca_ex	PF01699	3 - 150	1.7e-20	Sodium/calcium exchanger protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38170 AT2G38170 AT2G38170 AT3G51860 AT3G51860
fragaria_vesca	FvH4_3g38530 FvH4_6g11493
malus_domestica	MD03G1070900.v1.1 MD04G1151600.v1.1 MD11G1074900.v1.1 MD12G1165800.v1.1
prunus_persica	Prupe.6G057700_v2.0.a1 Prupe.6G276800_v2.0.a1 Prupe.6G276800_v2.0.a1
pyrus_communis	pycom03g05720 pycom04g13770
rosa_chinensis	RchiOBHm_Chr3g0463191 RchiOBHm_Chr5g0069431
rosa_laevigata	RLG00000024804 RLG00000036052
rosa_multiflora	Rmu_sc0002658.1_g000024 Rmu_sc0022743.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011530 Rroxscaffold_6G00416820
rosa_rugosa	Rorug03G0062200.1 Rorug03G0062300 Rorug03G0062300 Rorug05G0397500
rosa_samantha	Rh3AG120400 Rh3BG124800 Rh3CG126900 Rh3DG125800 Rh5AG454800 Rh5BG473600 Rh5CG496100 Rh5DG485600
rosa_wichuraiana	Rw3G010220 Rw5G042420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	459
AciI	CCGC	2 cut(s)	11, 457
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgeI	ACCGGT	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	470
AluBI	AGCT	6 cut(s)	24, 106, 269, 351, 445, 473
AluI	AGCT	6 cut(s)	24, 106, 269, 351, 445, 473
Alw21I	GWGCWC	2 cut(s)	108, 353
Alw26I	GTCTC	1 cut(s)	256
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	6 cut(s)	289, 316, 338, 341, 399, 425
AsiGI	ACCGGT	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	56
BanII	GRGCYC	2 cut(s)	108, 353
BbsI	GAAGAC	1 cut(s)	430
Bbv12I	GWGCWC	2 cut(s)	108, 353
BbvI	GCAGC	6 cut(s)	276, 303, 325, 328, 411, 412
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	2 cut(s)	8, 128
BfmI	CTRYAG	2 cut(s)	99, 342
BisI	GCNGC	6 cut(s)	290, 317, 339, 342, 400, 426
BlsI	GCNGC	6 cut(s)	291, 318, 340, 343, 401, 427
BmcAI	AGTACT	1 cut(s)	158
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	172
BmrI	ACTGGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	399
BmuI	ACTGGG	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	430
Bpu10I	CCTNAGC	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	199
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	2 cut(s)	171, 361
Bse3DI	GCAATG	2 cut(s)	100, 225
BseDI	CCNNGG	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMI	GCAATG	2 cut(s)	100, 225
BseMII	CTCAG	1 cut(s)	488
BseNI	ACTGG	2 cut(s)	171, 361
BseXI	GCAGC	6 cut(s)	276, 303, 325, 328, 411, 412
Bsh1236I	CGCG	1 cut(s)	459
BshFI	GGCC	1 cut(s)	72
BshTI	ACCGGT	1 cut(s)	53
BsiHKAI	GWGCWC	2 cut(s)	108, 353
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	72
Bsp1286I	GDGCHC	2 cut(s)	108, 353
BspACI	CCGC	2 cut(s)	11, 457
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	487
BspFNI	CGCG	1 cut(s)	459
BspLI	GGNNCC	1 cut(s)	172
BspMAI	CTGCAG	1 cut(s)	346
BsrDI	GCAATG	2 cut(s)	100, 225
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	2 cut(s)	171, 361
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	199
Bst4CI	ACNGT	2 cut(s)	64, 406
BstAPI	GCANNNNNTGC	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	397
BstDEI	CTNAG	2 cut(s)	193, 474
BstFNI	CGCG	1 cut(s)	459
BstMAI	GTCTC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 322, 425
BstSFI	CTRYAG	2 cut(s)	99, 342
BstUI	CGCG	1 cut(s)	459
BstV1I	GCAGC	6 cut(s)	276, 303, 325, 328, 411, 412
BstV2I	GAAGAC	1 cut(s)	430
BsuRI	GGCC	1 cut(s)	72
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	3 cut(s)	69, 153, 402
Cac8I	GCNNGC	1 cut(s)	397
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	157
CspAI	ACCGGT	1 cut(s)	53
CviAII	CATG	2 cut(s)	235, 286
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	2 cut(s)	193, 474
Ecl136II	GAGCTC	2 cut(s)	106, 351
Eco147I	AGGCCT	1 cut(s)	72
Eco24I	GRGCYC	2 cut(s)	108, 353
Eco47I	GGWCC	1 cut(s)	56
Eco53kI	GAGCTC	2 cut(s)	106, 351
EcoICRI	GAGCTC	2 cut(s)	106, 351
EcoT38I	GRGCYC	2 cut(s)	108, 353
FaeI	CATG	2 cut(s)	238, 289
FaiI	YATR	7 cut(s)	110, 236, 255, 287, 430, 434, 520
FatI	CATG	2 cut(s)	234, 285
Fnu4HI	GCNGC	6 cut(s)	290, 317, 339, 342, 400, 426
FriOI	GRGCYC	2 cut(s)	108, 353
Fsp4HI	GCNGC	6 cut(s)	290, 317, 339, 342, 400, 426
FspBI	CTAG	2 cut(s)	8, 128
GluI	GCNGC	6 cut(s)	290, 317, 339, 342, 400, 426
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	1 cut(s)	54
Hin1II	CATG	2 cut(s)	238, 289
HinfI	GANTC	2 cut(s)	18, 371
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	4 cut(s)	277, 330, 370, 450
Hpy188III	TCNNGA	3 cut(s)	28, 390, 476
Hpy8I	GTNNAC	4 cut(s)	277, 330, 370, 450
HpyAV	CCTTC	2 cut(s)	83, 197
HpyCH4III	ACNGT	2 cut(s)	64, 406
HpyCH4IV	ACGT	1 cut(s)	332
HpyCH4V	TGCA	3 cut(s)	116, 344, 428
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 322, 425
HpyF3I	CTNAG	2 cut(s)	193, 474
HpySE526I	ACGT	1 cut(s)	332
Hsp92II	CATG	2 cut(s)	238, 289
LmnI	GCTCC	1 cut(s)	348
Lsp1109I	GCAGC	6 cut(s)	276, 303, 325, 328, 411, 412
LweI	GCATC	1 cut(s)	399
MaeI	CTAG	2 cut(s)	8, 128
MaeII	ACGT	1 cut(s)	332
MboII	GAAGA	2 cut(s)	430, 517
MhlI	GDGCHC	2 cut(s)	108, 353
MluCI	AATT	3 cut(s)	39, 111, 461
MlyI	GAGTC	2 cut(s)	27, 365
MmeI	TCCRAC	1 cut(s)	83
MnlI	CCTC	3 cut(s)	62, 209, 293
MslI	CAYNNNNRTG	1 cut(s)	407
MspA1I	CMGCKG	1 cut(s)	445
MspI	CCGG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	459
MwoI	GCNNNNNNNGC	3 cut(s)	122, 322, 425
NlaIII	CATG	2 cut(s)	238, 289
NlaIV	GGNNCC	1 cut(s)	172
NmeAIII	GCCGAG	1 cut(s)	180
PceI	AGGCCT	1 cut(s)	72
PinAI	ACCGGT	1 cut(s)	53
PkrI	GCNGC	6 cut(s)	291, 318, 340, 343, 401, 427
PleI	GAGTC	2 cut(s)	26, 365
PpsI	GAGTC	2 cut(s)	26, 365
Psp124BI	GAGCTC	2 cut(s)	108, 353
PspN4I	GGNNCC	1 cut(s)	172
PspPI	GGNCC	1 cut(s)	56
PstI	CTGCAG	1 cut(s)	346
PvuII	CAGCTG	1 cut(s)	445
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	407
SacI	GAGCTC	2 cut(s)	108, 353
SatI	GCNGC	6 cut(s)	290, 317, 339, 342, 400, 426
Sau96I	GGNCC	1 cut(s)	56
ScaI	AGTACT	1 cut(s)	158
SchI	GAGTC	2 cut(s)	27, 365
SduI	GDGCHC	2 cut(s)	108, 353
SfaNI	GCATC	1 cut(s)	399
SfcI	CTRYAG	2 cut(s)	99, 342
SinI	GGWCC	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	407
Sse9I	AATT	3 cut(s)	39, 111, 461
SseBI	AGGCCT	1 cut(s)	72
SsiI	CCGC	2 cut(s)	11, 457
SspI	AATATT	1 cut(s)	120
SspMI	CTAG	2 cut(s)	8, 128
SstI	GAGCTC	2 cut(s)	108, 353
StuI	AGGCCT	1 cut(s)	72
TaaI	ACNGT	2 cut(s)	64, 406
TaiI	ACGT	1 cut(s)	335
TasI	AATT	3 cut(s)	39, 111, 461
TatI	WGTACW	1 cut(s)	156
TscAI	CASTG	3 cut(s)	69, 153, 409
TseI	GCWGC	6 cut(s)	289, 316, 338, 341, 399, 425
TspDTI	ATGAA	1 cut(s)	251
TspRI	CASTG	3 cut(s)	69, 153, 409
VpaK11BI	GGWCC	1 cut(s)	56
XspI	CTAG	2 cut(s)	8, 128
ZrmI	AGTACT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.