isoform X1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G51620 AT3G51620 AT3G51620 |
| fragaria_vesca | FvH4_6g10110 FvH4_6g10110 FvH4_6g10110 FvH4_6g10110 FvH4_6g10110 |
| malus_domestica | MD04G1172800.v1.1 MD12G1186100.v1.1 |
| prunus_persica | Prupe.6G291600_v2.0.a1 |
| pyrus_communis | pycom04g15270 pycom12g17470 |
| rosa_chinensis | RchiOBHm_Chr3g0460811 |
| rosa_laevigata | RLG00000024979 |
| rosa_multiflora | Rmu_sc0007678.1_g000014 |
| rosa_roxburghii | Rroxscaffold_6G00419200 |
| rosa_rugosa | Rorug03G0046500 |
| rosa_samantha | Rh3AG103600 Rh3BG107300 Rh3CG109200 Rh3DG109100 |
| rosa_wichuraiana | Rw3G008820 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 390 |
| Acc36I | ACCTGC | 3 cut(s) | 184, 550, 2557 |
| AccB1I | GGYRCC | 3 cut(s) | 38, 650, 2026 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 863 |
| AccII | CGCG | 1 cut(s) | 131 |
| AclWI | GGATC | 7 cut(s) | 983, 1120, 1184, 1342, 1819, 2648, 2661 |
| AcoI | YGGCCR | 5 cut(s) | 135, 378, 1015, 2323, 2605 |
| AcsI | RAATTY | 3 cut(s) | 755, 776, 2513 |
| AcuI | CTGAAG | 1 cut(s) | 1878 |
| AcyI | GRCGYC | 6 cut(s) | 39, 183, 387, 854, 1981, 2027 |
| AfaI | GTAC | 6 cut(s) | 152, 303, 701, 1246, 1641, 2466 |
| AflII | CTTAAG | 1 cut(s) | 995 |
| AflIII | ACRYGT | 1 cut(s) | 210 |
| AjiI | CACGTC | 1 cut(s) | 211 |
| AjnI | CCWGG | 3 cut(s) | 620, 1369, 1761 |
| AleI | CACNNNNGTG | 2 cut(s) | 209, 2474 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2224, 2256 |
| AluBI | AGCT | 8 cut(s) | 475, 792, 804, 1731, 1742, 1839, 2002, 2439 |
| AluI | AGCT | 8 cut(s) | 475, 792, 804, 1731, 1742, 1839, 2002, 2439 |
| Alw21I | GWGCWC | 4 cut(s) | 1075, 1435, 1841, 2043 |
| Alw26I | GTCTC | 7 cut(s) | 47, 680, 845, 938, 1683, 2313, 2403 |
| Alw44I | GTGCAC | 1 cut(s) | 2039 |
| AlwI | GGATC | 7 cut(s) | 983, 1120, 1184, 1342, 1819, 2648, 2661 |
| Ama87I | CYCGRG | 2 cut(s) | 2079, 2596 |
| ApaLI | GTGCAC | 1 cut(s) | 2039 |
| ApeKI | GCWGC | 3 cut(s) | 157, 425, 2092 |
| ApoI | RAATTY | 3 cut(s) | 755, 776, 2513 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2255 |
| AspLEI | GCGC | 7 cut(s) | 41, 146, 193, 376, 395, 1089, 2029 |
| AspS9I | GGNCC | 4 cut(s) | 734, 745, 812, 2546 |
| AsuHPI | GGTGA | 3 cut(s) | 84, 884, 2607 |
| AvaI | CYCGRG | 2 cut(s) | 2079, 2596 |
| AvaII | GGWCC | 4 cut(s) | 734, 745, 812, 2546 |
| BaeGI | GKGCMC | 2 cut(s) | 655, 2043 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1737, 1770 |
| BalI | TGGCCA | 3 cut(s) | 380, 2325, 2607 |
| BamHI | GGATCC | 1 cut(s) | 2653 |
| BanI | GGYRCC | 3 cut(s) | 38, 650, 2026 |
| BanII | GRGCYC | 1 cut(s) | 1841 |
| BauI | CACGAG | 1 cut(s) | 2220 |
| BbsI | GAAGAC | 1 cut(s) | 1866 |
| Bbv12I | GWGCWC | 4 cut(s) | 1075, 1435, 1841, 2043 |
| BbvI | GCAGC | 3 cut(s) | 144, 412, 2104 |
| BccI | CCATC | 7 cut(s) | 320, 594, 663, 1208, 1807, 1830, 2633 |
| BceAI | ACGGC | 3 cut(s) | 26, 52, 1585 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 440, 474, 548, 582 |
| BciT130I | CCWGG | 3 cut(s) | 622, 1371, 1763 |
| BcoDI | GTCTC | 7 cut(s) | 47, 680, 845, 938, 1683, 2313, 2403 |
| BfaI | CTAG | 6 cut(s) | 1082, 1386, 1872, 2142, 2345, 2454 |
| BfmI | CTRYAG | 1 cut(s) | 2430 |
| BfoI | RGCGCY | 4 cut(s) | 42, 147, 377, 2030 |
| BfrI | CTTAAG | 1 cut(s) | 995 |
| BfuAI | ACCTGC | 3 cut(s) | 184, 550, 2557 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 131, 134, 576 |
| BglII | AGATCT | 1 cut(s) | 1933 |
| BisI | GCNGC | 8 cut(s) | 126, 129, 132, 135, 158, 426, 1300, 2093 |
| BlsI | GCNGC | 8 cut(s) | 127, 130, 133, 136, 159, 427, 1301, 2094 |
| BmcAI | AGTACT | 1 cut(s) | 152 |
| Bme1390I | CCNGG | 3 cut(s) | 622, 1371, 1763 |
| Bme18I | GGWCC | 4 cut(s) | 734, 745, 812, 2546 |
| BmeT110I | CYCGRG | 2 cut(s) | 2079, 2596 |
| BmgBI | CACGTC | 1 cut(s) | 211 |
| BmgT120I | GGNCC | 4 cut(s) | 734, 745, 812, 2546 |
| BmiI | GGNNCC | 7 cut(s) | 40, 652, 2028, 2227, 2449, 2547, 2655 |
| BmrFI | CCNGG | 3 cut(s) | 622, 1371, 1763 |
| BmsI | GCATC | 6 cut(s) | 982, 1466, 1522, 1573, 2199, 2613 |
| BpiI | GAAGAC | 1 cut(s) | 1866 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1609, 1641 |
| BpuEI | CTTGAG | 3 cut(s) | 575, 826, 884 |
| BsaAI | YACGTR | 1 cut(s) | 2315 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1770 |
| BsaHI | GRCGYC | 6 cut(s) | 39, 183, 387, 854, 1981, 2027 |
| BsaJI | CCNNGG | 5 cut(s) | 129, 1012, 2022, 2066, 2279 |
| BsaWI | WCCGGW | 2 cut(s) | 2035, 2228 |
| Bse1I | ACTGG | 6 cut(s) | 158, 1605, 1705, 1906, 2449, 2608 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1770 |
| BseBI | CCWGG | 3 cut(s) | 622, 1371, 1763 |
| BseDI | CCNNGG | 5 cut(s) | 129, 1012, 2022, 2066, 2279 |
| BseGI | GGATG | 5 cut(s) | 911, 1457, 1771, 1822, 2077 |
| BseJI | GATNNNNATC | 1 cut(s) | 1770 |
| BseMII | CTCAG | 7 cut(s) | 420, 840, 875, 936, 1112, 1928, 2490 |
| BseNI | ACTGG | 6 cut(s) | 158, 1605, 1705, 1906, 2449, 2608 |
| BseRI | GAGGAG | 6 cut(s) | 65, 182, 235, 238, 383, 2219 |
| BseSI | GKGCMC | 2 cut(s) | 655, 2043 |
| BseXI | GCAGC | 3 cut(s) | 144, 412, 2104 |
| BsgI | GTGCAG | 2 cut(s) | 470, 2111 |
| Bsh1236I | CGCG | 1 cut(s) | 131 |
| BshNI | GGYRCC | 3 cut(s) | 38, 650, 2026 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1075, 1435, 1841, 2043 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2079, 2596 |
| BsiSI | CCGG | 3 cut(s) | 640, 2036, 2229 |
| BslFI | GGGAC | 5 cut(s) | 85, 1181, 1893, 2123, 2559 |
| BsmAI | GTCTC | 7 cut(s) | 47, 680, 845, 938, 1683, 2313, 2403 |
| BsmBI | CGTCTC | 2 cut(s) | 47, 845 |
| BsmFI | GGGAC | 5 cut(s) | 85, 1181, 1893, 2123, 2559 |
| BsmI | GAATGC | 3 cut(s) | 1089, 2110, 2491 |
| BsoBI | CYCGRG | 2 cut(s) | 2079, 2596 |
| Bsp1286I | GDGCHC | 5 cut(s) | 655, 1075, 1435, 1841, 2043 |
| Bsp1407I | TGTACA | 1 cut(s) | 699 |
| Bsp19I | CCATGG | 2 cut(s) | 2022, 2066 |
| BspCNI | CTCAG | 7 cut(s) | 421, 841, 876, 935, 1111, 1929, 2491 |
| BspFNI | CGCG | 1 cut(s) | 131 |
| BspHI | TCATGA | 1 cut(s) | 1327 |
| BspLI | GGNNCC | 7 cut(s) | 40, 652, 2028, 2227, 2449, 2547, 2655 |
| BspMAI | CTGCAG | 1 cut(s) | 2434 |
| BspMI | ACCTGC | 3 cut(s) | 184, 550, 2557 |
| BspPI | GGATC | 7 cut(s) | 983, 1120, 1184, 1342, 1819, 2648, 2661 |
| BspT107I | GGYRCC | 3 cut(s) | 38, 650, 2026 |
| BspTI | CTTAAG | 1 cut(s) | 995 |
| BsrGI | TGTACA | 1 cut(s) | 699 |
| BsrI | ACTGG | 6 cut(s) | 158, 1605, 1705, 1906, 2449, 2608 |
| BssECI | CCNNGG | 5 cut(s) | 129, 1012, 2022, 2066, 2279 |
| BssNI | GRCGYC | 6 cut(s) | 39, 183, 387, 854, 1981, 2027 |
| BssSI | CACGAG | 1 cut(s) | 2220 |
| BssT1I | CCWWGG | 4 cut(s) | 1012, 2022, 2066, 2279 |
| Bst2BI | CACGAG | 1 cut(s) | 2220 |
| Bst2UI | CCWGG | 3 cut(s) | 622, 1371, 1763 |
| Bst4CI | ACNGT | 5 cut(s) | 1487, 1520, 1833, 2049, 2684 |
| Bst6I | CTCTTC | 4 cut(s) | 276, 719, 837, 2406 |
| BstACI | GRCGYC | 6 cut(s) | 39, 183, 387, 854, 1981, 2027 |
| BstAFI | CTTAAG | 1 cut(s) | 995 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 546 |
| BstAUI | TGTACA | 1 cut(s) | 699 |
| BstBAI | YACGTR | 1 cut(s) | 2315 |
| BstC8I | GCNNGC | 6 cut(s) | 162, 378, 542, 1647, 2532, 2575 |
| BstDEI | CTNAG | 8 cut(s) | 429, 849, 884, 922, 1098, 1815, 1937, 2499 |
| BstDSI | CCRYGG | 3 cut(s) | 129, 2022, 2066 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 933, 1374 |
| BstF5I | GGATG | 5 cut(s) | 911, 1457, 1771, 1822, 2077 |
| BstFNI | CGCG | 1 cut(s) | 131 |
| BstH2I | RGCGCY | 4 cut(s) | 42, 147, 377, 2030 |
| BstHHI | GCGC | 7 cut(s) | 41, 146, 193, 376, 395, 1089, 2029 |
| BstMAI | GTCTC | 7 cut(s) | 47, 680, 845, 938, 1683, 2313, 2403 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 131, 134, 143, 170, 541, 546, 576, 2098 |
| BstNI | CCWGG | 3 cut(s) | 622, 1371, 1763 |
| BstNSI | RCATGY | 2 cut(s) | 1649, 2534 |
| BstSCI | CCNGG | 3 cut(s) | 620, 1369, 1761 |
| BstSFI | CTRYAG | 1 cut(s) | 2430 |
| BstSLI | GKGCMC | 2 cut(s) | 655, 2043 |
| BstUI | CGCG | 1 cut(s) | 131 |
| BstV1I | GCAGC | 3 cut(s) | 144, 412, 2104 |
| BstV2I | GAAGAC | 1 cut(s) | 1866 |
| BstX2I | RGATCY | 5 cut(s) | 1125, 1189, 1811, 1933, 2653 |
| BstYI | RGATCY | 5 cut(s) | 1125, 1189, 1811, 1933, 2653 |
| BtgI | CCRYGG | 3 cut(s) | 129, 2022, 2066 |
| BtrI | CACGTC | 1 cut(s) | 211 |
| BtsCI | GGATG | 5 cut(s) | 911, 1457, 1771, 1822, 2077 |
| BtsIMutI | CAGTG | 4 cut(s) | 204, 1698, 2094, 2442 |
| BveI | ACCTGC | 3 cut(s) | 184, 550, 2557 |
| Cac8I | GCNNGC | 6 cut(s) | 162, 378, 542, 1647, 2532, 2575 |
| CciI | TCATGA | 1 cut(s) | 1327 |
| CfoI | GCGC | 7 cut(s) | 41, 146, 193, 376, 395, 1089, 2029 |
| Cfr13I | GGNCC | 4 cut(s) | 734, 745, 812, 2546 |
| Cfr42I | CCGCGG | 1 cut(s) | 132 |
| CseI | GACGC | 4 cut(s) | 172, 184, 862, 1970 |
| CsiI | ACCWGGT | 1 cut(s) | 1369 |
| Csp6I | GTAC | 6 cut(s) | 151, 302, 700, 1245, 1640, 2465 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2157, 2192 |
| CviQI | GTAC | 6 cut(s) | 151, 302, 700, 1245, 1640, 2465 |
| DdeI | CTNAG | 8 cut(s) | 429, 849, 884, 922, 1098, 1815, 1937, 2499 |
| DinI | GGCGCC | 2 cut(s) | 40, 2028 |
| DraI | TTTAAA | 1 cut(s) | 595 |
| EaeI | YGGCCR | 5 cut(s) | 135, 378, 1015, 2323, 2605 |
| Eam1104I | CTCTTC | 4 cut(s) | 276, 719, 837, 2406 |
| EarI | CTCTTC | 4 cut(s) | 276, 719, 837, 2406 |
| EciI | GGCGGA | 1 cut(s) | 179 |
| Ecl136II | GAGCTC | 1 cut(s) | 1839 |
| Eco130I | CCWWGG | 4 cut(s) | 1012, 2022, 2066, 2279 |
| Eco147I | AGGCCT | 3 cut(s) | 620, 1177, 2269 |
| Eco24I | GRGCYC | 1 cut(s) | 1841 |
| Eco47I | GGWCC | 4 cut(s) | 734, 745, 812, 2546 |
| Eco53kI | GAGCTC | 1 cut(s) | 1839 |
| Eco57I | CTGAAG | 1 cut(s) | 1878 |
| Eco88I | CYCGRG | 2 cut(s) | 2079, 2596 |
| EcoICRI | GAGCTC | 1 cut(s) | 1839 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 933, 1374 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2546 |
| EcoRII | CCWGG | 3 cut(s) | 620, 1369, 1761 |
| EcoT14I | CCWWGG | 4 cut(s) | 1012, 2022, 2066, 2279 |
| EcoT22I | ATGCAT | 2 cut(s) | 2110, 2493 |
| EcoT38I | GRGCYC | 1 cut(s) | 1841 |
| EgeI | GGCGCC | 2 cut(s) | 40, 2028 |
| EheI | GGCGCC | 2 cut(s) | 40, 2028 |
| ErhI | CCWWGG | 4 cut(s) | 1012, 2022, 2066, 2279 |
| Esp3I | CGTCTC | 2 cut(s) | 47, 845 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 573, 605, 1042, 1074 |
| FaqI | GGGAC | 5 cut(s) | 85, 1181, 1893, 2123, 2559 |
| FauI | CCCGC | 1 cut(s) | 153 |
| FauNDI | CATATG | 2 cut(s) | 676, 1066 |
| Fnu4HI | GCNGC | 8 cut(s) | 126, 129, 132, 135, 158, 426, 1300, 2093 |
| FokI | GGATG | 5 cut(s) | 918, 1444, 1778, 1809, 2084 |
| FriOI | GRGCYC | 1 cut(s) | 1841 |
| Fsp4HI | GCNGC | 8 cut(s) | 126, 129, 132, 135, 158, 426, 1300, 2093 |
| FspBI | CTAG | 6 cut(s) | 1082, 1386, 1872, 2142, 2345, 2454 |
| GlaI | GCGC | 7 cut(s) | 40, 145, 192, 375, 394, 1088, 2028 |
| GluI | GCNGC | 8 cut(s) | 126, 129, 132, 135, 158, 426, 1300, 2093 |
| HaeII | RGCGCY | 4 cut(s) | 42, 147, 377, 2030 |
| HapII | CCGG | 3 cut(s) | 640, 2036, 2229 |
| HgaI | GACGC | 4 cut(s) | 172, 184, 862, 1970 |
| HhaI | GCGC | 7 cut(s) | 41, 146, 193, 376, 395, 1089, 2029 |
| Hin1I | GRCGYC | 6 cut(s) | 39, 183, 387, 854, 1981, 2027 |
| Hin6I | GCGC | 7 cut(s) | 39, 144, 191, 374, 393, 1087, 2027 |
| HinP1I | GCGC | 7 cut(s) | 39, 144, 191, 374, 393, 1087, 2027 |
| HincII | GTYRAC | 1 cut(s) | 2631 |
| HindII | GTYRAC | 1 cut(s) | 2631 |
| HindIII | AAGCTT | 2 cut(s) | 473, 1729 |
| HinfI | GANTC | 9 cut(s) | 115, 457, 643, 1250, 1277, 1283, 1771, 2014, 2084 |
| HpaII | CCGG | 3 cut(s) | 640, 2036, 2229 |
| HphI | GGTGA | 3 cut(s) | 84, 884, 2607 |
| Hpy166II | GTNNAC | 6 cut(s) | 1079, 1111, 1169, 2041, 2467, 2631 |
| Hpy8I | GTNNAC | 6 cut(s) | 1079, 1111, 1169, 2041, 2467, 2631 |
| Hpy99I | CGWCG | 3 cut(s) | 82, 178, 1986 |
| HpyAV | CCTTC | 8 cut(s) | 105, 223, 526, 939, 1444, 1926, 2451, 2455 |
| HpyCH4III | ACNGT | 5 cut(s) | 1487, 1520, 1833, 2049, 2684 |
| HpyCH4IV | ACGT | 7 cut(s) | 210, 246, 387, 1113, 1550, 2314, 2357 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 131, 134, 143, 170, 541, 546, 576, 2098 |
| HpyF3I | CTNAG | 8 cut(s) | 429, 849, 884, 922, 1098, 1815, 1937, 2499 |
| HpySE526I | ACGT | 7 cut(s) | 210, 246, 387, 1113, 1550, 2314, 2357 |
| Hsp92I | GRCGYC | 6 cut(s) | 39, 183, 387, 854, 1981, 2027 |
| HspAI | GCGC | 7 cut(s) | 39, 144, 191, 374, 393, 1087, 2027 |
| KasI | GGCGCC | 2 cut(s) | 38, 2026 |
| KspI | CCGCGG | 1 cut(s) | 132 |
| LmnI | GCTCC | 2 cut(s) | 1430, 2674 |
| Lsp1109I | GCAGC | 3 cut(s) | 144, 412, 2104 |
| LweI | GCATC | 6 cut(s) | 982, 1466, 1522, 1573, 2199, 2613 |
| MabI | ACCWGGT | 1 cut(s) | 1369 |
| MaeI | CTAG | 6 cut(s) | 1082, 1386, 1872, 2142, 2345, 2454 |
| MaeII | ACGT | 7 cut(s) | 210, 246, 387, 1113, 1550, 2314, 2357 |
| MflI | RGATCY | 5 cut(s) | 1125, 1189, 1811, 1933, 2653 |
| MhlI | GDGCHC | 5 cut(s) | 655, 1075, 1435, 1841, 2043 |
| MlsI | TGGCCA | 3 cut(s) | 380, 2325, 2607 |
| MluCI | AATT | 9 cut(s) | 104, 612, 755, 776, 1269, 1500, 1572, 2350, 2513 |
| MluNI | TGGCCA | 3 cut(s) | 380, 2325, 2607 |
| Mly113I | GGCGCC | 2 cut(s) | 39, 2027 |
| MlyI | GAGTC | 3 cut(s) | 1259, 1286, 2093 |
| MmeI | TCCRAC | 4 cut(s) | 27, 1260, 1455, 1789 |
| Mox20I | TGGCCA | 3 cut(s) | 380, 2325, 2607 |
| Mph1103I | ATGCAT | 2 cut(s) | 2110, 2493 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2255 |
| MscI | TGGCCA | 3 cut(s) | 380, 2325, 2607 |
| MseI | TTAA | 7 cut(s) | 441, 594, 615, 978, 996, 1322, 1425 |
| MslI | CAYNNNNRTG | 6 cut(s) | 209, 1164, 1398, 2409, 2472, 2474 |
| Msp20I | TGGCCA | 3 cut(s) | 380, 2325, 2607 |
| MspA1I | CMGCKG | 2 cut(s) | 131, 1742 |
| MspCI | CTTAAG | 1 cut(s) | 995 |
| MspI | CCGG | 3 cut(s) | 640, 2036, 2229 |
| MspR9I | CCNGG | 3 cut(s) | 622, 1371, 1763 |
| Mva1269I | GAATGC | 3 cut(s) | 1089, 2110, 2491 |
| MvaI | CCWGG | 3 cut(s) | 622, 1371, 1763 |
| MvnI | CGCG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 131, 134, 143, 170, 541, 546, 576, 2098 |
| NarI | GGCGCC | 2 cut(s) | 39, 2027 |
| NcoI | CCATGG | 2 cut(s) | 2022, 2066 |
| NdeI | CATATG | 2 cut(s) | 676, 1066 |
| NlaIV | GGNNCC | 7 cut(s) | 40, 652, 2028, 2227, 2449, 2547, 2655 |
| NmeAIII | GCCGAG | 1 cut(s) | 172 |
| NmuCI | GTSAC | 5 cut(s) | 1251, 1381, 1827, 2272, 2382 |
| NsiI | ATGCAT | 2 cut(s) | 2110, 2493 |
| NspI | RCATGY | 2 cut(s) | 1649, 2534 |
| OliI | CACNNNNGTG | 2 cut(s) | 209, 2474 |
| PaeI | GCATGC | 2 cut(s) | 1649, 2534 |
| PaeR7I | CTCGAG | 2 cut(s) | 2079, 2596 |
| PagI | TCATGA | 1 cut(s) | 1327 |
| PceI | AGGCCT | 3 cut(s) | 620, 1177, 2269 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 29, 77, 83 |
| PctI | GAATGC | 3 cut(s) | 1089, 2110, 2491 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2255 |
| PfeI | GAWTC | 6 cut(s) | 115, 457, 643, 1283, 1771, 2014 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 863 |
| PkrI | GCNGC | 8 cut(s) | 127, 130, 133, 136, 159, 427, 1301, 2094 |
| PleI | GAGTC | 3 cut(s) | 1258, 1285, 2092 |
| PluTI | GGCGCC | 2 cut(s) | 42, 2030 |
| PpsI | GAGTC | 3 cut(s) | 1258, 1285, 2092 |
| Ppu21I | YACGTR | 1 cut(s) | 2315 |
| PpuMI | RGGWCCY | 1 cut(s) | 2546 |
| Psp124BI | GAGCTC | 1 cut(s) | 1841 |
| Psp5II | RGGWCCY | 1 cut(s) | 2546 |
| Psp6I | CCWGG | 3 cut(s) | 620, 1369, 1761 |
| PspGI | CCWGG | 3 cut(s) | 620, 1369, 1761 |
| PspN4I | GGNNCC | 7 cut(s) | 40, 652, 2028, 2227, 2449, 2547, 2655 |
| PspPI | GGNCC | 4 cut(s) | 734, 745, 812, 2546 |
| PspPPI | RGGWCCY | 1 cut(s) | 2546 |
| PspXI | VCTCGAGB | 1 cut(s) | 2596 |
| PstI | CTGCAG | 1 cut(s) | 2434 |
| PsuI | RGATCY | 5 cut(s) | 1125, 1189, 1811, 1933, 2653 |
| PvuII | CAGCTG | 1 cut(s) | 1742 |
| RsaI | GTAC | 6 cut(s) | 152, 303, 701, 1246, 1641, 2466 |
| RsaNI | GTAC | 6 cut(s) | 151, 302, 700, 1245, 1640, 2465 |
| RseI | CAYNNNNRTG | 6 cut(s) | 209, 1164, 1398, 2409, 2472, 2474 |
| SacI | GAGCTC | 1 cut(s) | 1841 |
| SacII | CCGCGG | 1 cut(s) | 132 |
| SaqAI | TTAA | 7 cut(s) | 441, 594, 615, 978, 996, 1322, 1425 |
| SatI | GCNGC | 8 cut(s) | 126, 129, 132, 135, 158, 426, 1300, 2093 |
| Sau96I | GGNCC | 4 cut(s) | 734, 745, 812, 2546 |
| ScaI | AGTACT | 1 cut(s) | 152 |
| SchI | GAGTC | 3 cut(s) | 1259, 1286, 2093 |
| ScrFI | CCNGG | 3 cut(s) | 622, 1371, 1763 |
| SduI | GDGCHC | 5 cut(s) | 655, 1075, 1435, 1841, 2043 |
| SexAI | ACCWGGT | 1 cut(s) | 1369 |
| SfaNI | GCATC | 6 cut(s) | 982, 1466, 1522, 1573, 2199, 2613 |
| SfcI | CTRYAG | 1 cut(s) | 2430 |
| SfoI | GGCGCC | 2 cut(s) | 40, 2028 |
| Sfr274I | CTCGAG | 2 cut(s) | 2079, 2596 |
| Sfr303I | CCGCGG | 1 cut(s) | 132 |
| SgrBI | CCGCGG | 1 cut(s) | 132 |
| SinI | GGWCC | 4 cut(s) | 734, 745, 812, 2546 |
| SlaI | CTCGAG | 2 cut(s) | 2079, 2596 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 209, 1164, 1398, 2409, 2472, 2474 |
| SmlI | CTYRAG | 6 cut(s) | 554, 805, 899, 995, 2079, 2596 |
| SmoI | CTYRAG | 6 cut(s) | 554, 805, 899, 995, 2079, 2596 |
| SphI | GCATGC | 2 cut(s) | 1649, 2534 |
| Sse9I | AATT | 9 cut(s) | 104, 612, 755, 776, 1269, 1500, 1572, 2350, 2513 |
| SseBI | AGGCCT | 3 cut(s) | 620, 1177, 2269 |
| SspDI | GGCGCC | 2 cut(s) | 38, 2026 |
| SspI | AATATT | 1 cut(s) | 499 |
| SspMI | CTAG | 6 cut(s) | 1082, 1386, 1872, 2142, 2345, 2454 |
| SstI | GAGCTC | 1 cut(s) | 1841 |
| StuI | AGGCCT | 3 cut(s) | 620, 1177, 2269 |
| StyD4I | CCNGG | 3 cut(s) | 620, 1369, 1761 |
| StyI | CCWWGG | 4 cut(s) | 1012, 2022, 2066, 2279 |
| TaaI | ACNGT | 5 cut(s) | 1487, 1520, 1833, 2049, 2684 |
| TaiI | ACGT | 7 cut(s) | 213, 249, 390, 1116, 1553, 2317, 2360 |
| TaqI | TCGA | 4 cut(s) | 113, 507, 2080, 2597 |
| TasI | AATT | 9 cut(s) | 104, 612, 755, 776, 1269, 1500, 1572, 2350, 2513 |
| TatI | WGTACW | 3 cut(s) | 150, 699, 1639 |
| TauI | GCSGC | 5 cut(s) | 128, 131, 134, 137, 1302 |
| TfiI | GAWTC | 6 cut(s) | 115, 457, 643, 1283, 1771, 2014 |
| Tru1I | TTAA | 7 cut(s) | 441, 594, 615, 978, 996, 1322, 1425 |
| Tru9I | TTAA | 7 cut(s) | 441, 594, 615, 978, 996, 1322, 1425 |
| TscAI | CASTG | 4 cut(s) | 211, 1705, 2094, 2449 |
| TseFI | GTSAC | 5 cut(s) | 1251, 1381, 1827, 2272, 2382 |
| TseI | GCWGC | 3 cut(s) | 157, 425, 2092 |
| Tsp45I | GTSAC | 5 cut(s) | 1251, 1381, 1827, 2272, 2382 |
| TspGWI | ACGGA | 3 cut(s) | 71, 1815, 2666 |
| TspRI | CASTG | 4 cut(s) | 211, 1705, 2094, 2449 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 863 |
| Vha464I | CTTAAG | 1 cut(s) | 995 |
| VneI | GTGCAC | 1 cut(s) | 2039 |
| VpaK11BI | GGWCC | 4 cut(s) | 734, 745, 812, 2546 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 933, 1374 |
| XapI | RAATTY | 3 cut(s) | 755, 776, 2513 |
| XbaI | TCTAGA | 1 cut(s) | 2344 |
| XceI | RCATGY | 2 cut(s) | 1649, 2534 |
| XhoI | CTCGAG | 2 cut(s) | 2079, 2596 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2255 |
| XspI | CTAG | 6 cut(s) | 1082, 1386, 1872, 2142, 2345, 2454 |
| ZraI | GACGTC | 1 cut(s) | 388 |
| ZrmI | AGTACT | 1 cut(s) | 152 |
| Zsp2I | ATGCAT | 2 cut(s) | 2110, 2493 |