Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0008549

Physical Location & Seq

Genomic Coordinates Forward (+)

8183952 .. 8189107

Gene Structure 5156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G008820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2526 bp

ATGGGCGATCTTAGGCCTTGGTCGCCTGAGCCAAACGGCGTCGTTTCGGAGGAGAGGCTGACCTCGTCTTCGTCGTCCGTGTTTTCAATTTCAACCAATCAGAGGGAGGACTGGCGGAGAGCGGAGGAGGCGACGCAGGGGGTTATAGCTCAGGTCCAGCCTACTCACGTCTCCGAGCGGAGAAGGAAGGCCGTCATTGATTACGTCCAGAGGCTCATTGGAGGTTTTCTTGGTTGCAAGGTGTTCCCGTTTGGATCAGTACCTCTGAAGACGTATCTCCCGGATGGAGATATTGATCTGACTGCTTTTGGTGGTCTAAATAGTGAGGAGTCACTGGCCAATGATGTCTGTGCTGTTCTTGAAAGTGAAGGTCACAATATGGCTGCTGAGTTTGTGGTGAAGGATGTGCAGTTAATTCGGGCTGAGGTTAAGCTTGTAAAGTGCCTTGTGCAAAATATTGTGGTTGATATATCCTTCAATCAGTTAGGAGGGCTATGTACGTTATGCTTTCTTGAGCAGGTTGATCGCCTCATTGGCAAAGATCATCTCTTTAAACGTAGTATCATACTGATTAAGGCTTGGTGCTATTATGAGAGTCGAATTCTTGGTGCCCATCACGGTTTGATATCTACATATGGTTTGGAGACCTTAGTTCTTTTTATCTTCCATCTATTCCATACATCTCTGAATGGTCCTCTAGCGGTCCTGTATAAATTCTTGGACTACTTCAGTAAATTTGATTGGGACAACTATTGTATCAGCTTGAATGGTCCAGTTCTCATATCCTCACTTCCTGAACTCTCGGCTGAGATGCCGGATAATGGTGGGGGTGATCTGTTGCTCAGTAGCGAATTTCTCAGGAGTTGTGTGGATAGGTTCTCAGTTCCTTCAAGGGGATATGAGACAAATTATAGAACTTTCCAGCCAAAGCATCTTAATATAGTTGATCCACTTAAAGAAAATAACAACCTTGGCAGAAGTGTGAGTAAAGGAAACTTTTACCGAATAAGGAGCGCTTTCACATATGGTGCTCGAAAACTAGGGCGCATCCTTTCCCAGCCTGAAGAGAACACTGATGATGAGATTAGAAAGTTCTTCTCAAACACATTGGACAGGCATGGAAGTGGACAGAGGCCGGATGTCCAAGATCCTATTCCATCATCCAGATATGATGGGTTTGGTTCTGCATTGGGTTCAGAGTTGCAAGAAGATAAAGCAGTTTATGAATCCGAATCTGCTTATTCAACCGGCTTGGTTGGGGATTCTGGGTTAAATCATGAGGGATCTTGGGATGGTGGAGATACAAATATTAATGTACCTGGTCAAGTTACAAATGGTCCACCCAAAAGTGATACAGAGTTAGTAACCCCAACAATGTTTCCGGAAATAGAGGGTTCCTCAAACGGAATTGCTGTTTCGGAGTGCCGCCTAGTTGGGGATGCAAAAGACCTAGCTACCTCCAGATTTCATGACCTTACAATTTCAAATGATGCTCAGAAACCATCCCCTAATGGAGATGAAGATCACGAACTGCCAGAAAGCTTTGGATCAGCTGAGAATGGGGTTGGTAACCAGGATGAGAATCAATCAGCTTGTAATCAGGAGTCTTTGGCTCCTGTTGGACAAAAGCACCAACTTTCACGCTTGCATTCCATTGTGGGTTCATCTGAAGACTTTTATCCTAGTTATTCTGGTTATCGGATGCCAATTAGCACTACTGGAAGTCCTGAAACTTCTAACCCTTTGTCTGATCTCAGTGGGGAATATGATAGTCACTTACATAACCTACGTGATGGCCGTTCATGCTATTATGCATACGAGCTCAATGTAGTCCATCATCCCGTGCAGCCTCCAATGCCCTCACAGTACCAGAGAAGTAAGTCATGGGATGTAAGTCGACAGTCTGTGCAGCTCAGACAGAATGCATTTTCACCAATGAGTCCCAATGGTGTTGTCCCTAGACAAGCATTTTACCATATGAACCCACCAATGCTACCTAATGGTGCTGGGTTTGGTATGGAGGAGATGCCAAAACCACGAGGAACTGGAACATACTTTCCCAATACGAACCATTACAGAGATAGGCCCATGACAACAAGGGGAAGAAATCAAGCACCAGTGAGGTCTCCTCGTAACAATGGCCATGCCATGATACCACCTCCAGAAAATAATTTTCCTGACAGAAACAGTCGTGAGCTATCACAAGCCCAAATGCCTCTTCAAAAAGGTGGGGGAAAGTTTGGTTCTCCAGATAGCCCCACCAACTCCCCTCGAATGAAAGCATATCCCAATGCCAATGGGTCAATACATCCTTCTGATCGAATTGTAGAATTTGGGTCAGTTGAGCATGTGCCATTAGAGGCACATCCCAGTGGCAGGCAAACAAACTCGGGATCATCATCCAGTCAAAATTCCAGTGTTGGCCAAGCCTCAACAAACTCGGAATTGGGTACAGATCAAGATAGGATTTCTGTGCAGTCATACCGTTTGAAAGATGAAGATGATTTCCCACCGTTATCAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

841

Amino Acids

92.79

Weight (kDa)

5.46

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTPAP-like_central	PF22600	46 - 165	8.2e-08	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
PAP-OAS1	PF26180	178 - 370	1.2e-98	PAP/OAS1 substrate-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51620 AT3G51620 AT3G51620
fragaria_vesca	FvH4_6g10110 FvH4_6g10110 FvH4_6g10110 FvH4_6g10110 FvH4_6g10110
malus_domestica	MD04G1172800.v1.1 MD12G1186100.v1.1
prunus_persica	Prupe.6G291600_v2.0.a1
pyrus_communis	pycom04g15270 pycom12g17470
rosa_chinensis	RchiOBHm_Chr3g0460811
rosa_laevigata	RLG00000024979
rosa_multiflora	Rmu_sc0007678.1_g000014
rosa_roxburghii	Rroxscaffold_6G00419200
rosa_rugosa	Rorug03G0046500
rosa_samantha	Rh3AG103600 Rh3BG107300 Rh3CG109200 Rh3DG109100
rosa_wichuraiana	Rw3G008820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	508
AccB1I	GGYRCC	1 cut(s)	608
AccBSI	CCGCTC	2 cut(s)	122, 178
AccI	GTMKAC	1 cut(s)	1897
AccIII	TCCGGA	1 cut(s)	1381
AciI	CCGC	5 cut(s)	115, 122, 178, 701, 1426
AclWI	GGATC	6 cut(s)	262, 941, 1142, 1291, 1555, 2401
AcoI	YGGCCR	4 cut(s)	336, 1795, 2140, 2422
AcsI	RAATTY	6 cut(s)	600, 713, 734, 851, 2330, 2410
AcuI	CTGAAG	4 cut(s)	287, 712, 1083, 1689
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	5 cut(s)	261, 499, 1317, 1868, 2452
AfeI	AGCGCT	1 cut(s)	1015
AfiI	CCNNNNNNNGG	5 cut(s)	102, 821, 893, 1435, 2376
AjiI	CACGTC	1 cut(s)	169
AjnI	CCWGG	2 cut(s)	1318, 1572
AjuI	GAANNNNNNNTTGG	4 cut(s)	1137, 1169, 2202, 2234
AloI	GAACNNNNNNTCC	2 cut(s)	2041, 2073
Alw21I	GWGCWC	2 cut(s)	1033, 1824
Alw26I	GTCTC	4 cut(s)	175, 638, 896, 2130
AlwI	GGATC	6 cut(s)	262, 941, 1142, 1291, 1555, 2401
Ama87I	CYCGRG	1 cut(s)	2389
Aor13HI	TCCGGA	1 cut(s)	1381
Aor51HI	AGCGCT	1 cut(s)	1015
AoxI	GGCC	8 cut(s)	14, 189, 336, 1133, 1795, 2084, 2140, 2422
ApeKI	GCWGC	3 cut(s)	383, 1846, 1909
ApoI	RAATTY	6 cut(s)	600, 713, 734, 851, 2330, 2410
ArsI	GACNNNNNNTTYG	2 cut(s)	52, 84
AseI	ATTAAT	1 cut(s)	1311
AspLEI	GCGC	2 cut(s)	1016, 1047
AspS9I	GGNCC	6 cut(s)	154, 692, 703, 770, 1337, 2085
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	3 cut(s)	409, 842, 1923
AvaI	CYCGRG	1 cut(s)	2389
AvaII	GGWCC	5 cut(s)	154, 692, 703, 770, 1337
BaeGI	GKGCMC	1 cut(s)	613
BaeI	ACNNNNGTAYC	2 cut(s)	739, 772
BalI	TGGCCA	3 cut(s)	338, 2142, 2424
BanI	GGYRCC	1 cut(s)	608
BanII	GRGCYC	1 cut(s)	1824
BauI	CACGAG	1 cut(s)	2037
BbsI	GAAGAC	3 cut(s)	60, 275, 1677
Bbv12I	GWGCWC	2 cut(s)	1033, 1824
BbvCI	CCTCAGC	1 cut(s)	423
BbvI	GCAGC	3 cut(s)	370, 1858, 1921
BccI	CCATC	9 cut(s)	278, 621, 675, 1165, 1166, 1286, 1510, 1787, 1842
BceAI	ACGGC	3 cut(s)	52, 176, 1782
BcgI	CGANNNNNNTGC	4 cut(s)	398, 432, 506, 540
BciT130I	CCWGG	2 cut(s)	1320, 1574
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	4 cut(s)	175, 638, 896, 2130
BfaI	CTAG	6 cut(s)	698, 1040, 1430, 1451, 1683, 1959
BfoI	RGCGCY	1 cut(s)	1017
BfuAI	ACCTGC	1 cut(s)	508
BglI	GCCNNNNNGGC	1 cut(s)	534
BisI	GCNGC	4 cut(s)	384, 1426, 1847, 1910
BlsI	GCNGC	4 cut(s)	385, 1427, 1848, 1911
Bme1390I	CCNGG	3 cut(s)	281, 1320, 1574
Bme18I	GGWCC	5 cut(s)	154, 692, 703, 770, 1337
BmeT110I	CYCGRG	1 cut(s)	2389
BmgBI	CACGTC	1 cut(s)	169
BmgT120I	GGNCC	6 cut(s)	154, 692, 703, 770, 1337, 2085
BmiI	GGNNCC	3 cut(s)	610, 1396, 1614
BmrFI	CCNGG	3 cut(s)	281, 1320, 1574
BmrI	ACTGGG	1 cut(s)	2364
BmsI	GCATC	7 cut(s)	801, 940, 1056, 1429, 1480, 1692, 2016
BmuI	ACTGGG	1 cut(s)	2364
BpiI	GAAGAC	3 cut(s)	60, 275, 1677
BplI	GAGNNNNNCTC	4 cut(s)	1382, 1414, 2113, 2145
BpmI	CTGGAG	3 cut(s)	1444, 2145, 2232
Bpu10I	CCTNAGC	3 cut(s)	27, 150, 423
BpuEI	CTTGAG	1 cut(s)	533
BpuMI	CCSGG	1 cut(s)	281
BsaAI	YACGTR	1 cut(s)	1790
BsaBI	GATNNNNATC	4 cut(s)	294, 1521, 1581, 2398
BsaHI	GRCGYC	1 cut(s)	39
BsaI	GGTCTC	2 cut(s)	638, 2130
BsaJI	CCNNGG	2 cut(s)	17, 970
BsaWI	WCCGGW	1 cut(s)	1381
Bsc4I	CCNNNNNNNGG	5 cut(s)	102, 821, 893, 1435, 2376
Bse118I	RCCGGY	1 cut(s)	1247
Bse1I	ACTGG	9 cut(s)	116, 339, 773, 1723, 2050, 2117, 2370, 2403, 2415
Bse8I	GATNNNNATC	4 cut(s)	294, 1521, 1581, 2398
BseAI	TCCGGA	1 cut(s)	1381
BseBI	CCWGG	2 cut(s)	1320, 1574
BseDI	CCNNGG	2 cut(s)	17, 970
BseJI	GATNNNNATC	4 cut(s)	294, 1521, 1581, 2398
BseLI	CCNNNNNNNGG	5 cut(s)	102, 821, 893, 1435, 2376
BseNI	ACTGG	9 cut(s)	116, 339, 773, 1723, 2050, 2117, 2370, 2403, 2415
BseRI	GAGGAG	5 cut(s)	65, 140, 341, 2036, 2118
BseSI	GKGCMC	1 cut(s)	613
BseXI	GCAGC	3 cut(s)	370, 1858, 1921
BseYI	CCCAGC	2 cut(s)	1056, 2006
BsgI	GTGCAG	4 cut(s)	428, 1865, 1928, 2495
BshFI	GGCC	8 cut(s)	16, 191, 338, 1135, 1797, 2086, 2142, 2424
BshNI	GGYRCC	1 cut(s)	608
BsiHKAI	GWGCWC	2 cut(s)	1033, 1824
BsiHKCI	CYCGRG	1 cut(s)	2389
BsiSI	CCGG	5 cut(s)	281, 815, 1136, 1248, 1382
BslFI	GGGAC	3 cut(s)	758, 1926, 1940
BslI	CCNNNNNNNGG	5 cut(s)	102, 821, 893, 1435, 2376
BsmAI	GTCTC	4 cut(s)	175, 638, 896, 2130
BsmBI	CGTCTC	1 cut(s)	175
BsmFI	GGGAC	3 cut(s)	758, 1926, 1940
BsmI	GAATGC	2 cut(s)	1648, 1927
BsnI	GGCC	8 cut(s)	16, 191, 338, 1135, 1797, 2086, 2142, 2424
Bso31I	GGTCTC	2 cut(s)	638, 2130
BsoBI	CYCGRG	1 cut(s)	2389
Bsp1286I	GDGCHC	3 cut(s)	613, 1033, 1824
Bsp13I	TCCGGA	1 cut(s)	1381
BspACI	CCGC	5 cut(s)	115, 122, 178, 701, 1426
BspANI	GGCC	8 cut(s)	16, 191, 338, 1135, 1797, 2086, 2142, 2424
BspEI	TCCGGA	1 cut(s)	1381
BspHI	TCATGA	2 cut(s)	1276, 1468
BspLI	GGNNCC	3 cut(s)	610, 1396, 1614
BspMI	ACCTGC	1 cut(s)	508
BspPI	GGATC	6 cut(s)	262, 941, 1142, 1291, 1555, 2401
BspT107I	GGYRCC	1 cut(s)	608
BspTNI	GGTCTC	2 cut(s)	638, 2130
BsrBI	CCGCTC	2 cut(s)	122, 178
BsrFI	RCCGGY	1 cut(s)	1247
BsrI	ACTGG	9 cut(s)	116, 339, 773, 1723, 2050, 2117, 2370, 2403, 2415
BssAI	RCCGGY	1 cut(s)	1247
BssECI	CCNNGG	2 cut(s)	17, 970
BssNI	GRCGYC	1 cut(s)	39
BssSI	CACGAG	1 cut(s)	2037
BssT1I	CCWWGG	2 cut(s)	17, 970
Bst2BI	CACGAG	1 cut(s)	2037
Bst2UI	CCWGG	2 cut(s)	1320, 1574
Bst4CI	ACNGT	6 cut(s)	620, 1866, 1902, 2189, 2486, 2514
Bst6I	CTCTTC	2 cut(s)	1059, 2223
BstACI	GRCGYC	1 cut(s)	39
BstBAI	YACGTR	1 cut(s)	1790
BstC8I	GCNNGC	2 cut(s)	1646, 2378
BstEII	GGTNACC	1 cut(s)	1568
BstH2I	RGCGCY	1 cut(s)	1017
BstHHI	GCGC	2 cut(s)	1016, 1047
BstMAI	GTCTC	4 cut(s)	175, 638, 896, 2130
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 128, 534, 1803, 1855
BstNI	CCWGG	2 cut(s)	1320, 1574
BstNSI	RCATGY	1 cut(s)	2351
BstPI	GGTNACC	1 cut(s)	1568
BstSCI	CCNGG	3 cut(s)	279, 1318, 1572
BstSLI	GKGCMC	1 cut(s)	613
BstV1I	GCAGC	3 cut(s)	370, 1858, 1921
BstV2I	GAAGAC	3 cut(s)	60, 275, 1677
BstX2I	RGATCY	2 cut(s)	1147, 1283
BstYI	RGATCY	2 cut(s)	1147, 1283
BsuRI	GGCC	8 cut(s)	16, 191, 338, 1135, 1797, 2086, 2142, 2424
BtrI	CACGTC	1 cut(s)	169
BtsIMutI	CAGTG	6 cut(s)	332, 1071, 1762, 2124, 2377, 2422
BveI	ACCTGC	1 cut(s)	508
Cac8I	GCNNGC	2 cut(s)	1646, 2378
CciI	TCATGA	2 cut(s)	1276, 1468
CfoI	GCGC	2 cut(s)	1016, 1047
Cfr10I	RCCGGY	1 cut(s)	1247
Cfr13I	GGNCC	6 cut(s)	154, 692, 703, 770, 1337, 2085
CseI	GACGC	2 cut(s)	28, 142
CsiI	ACCWGGT	1 cut(s)	1318
Csp6I	GTAC	5 cut(s)	260, 498, 1316, 1867, 2451
CviAII	CATG	9 cut(s)	1118, 1277, 1469, 1803, 1884, 2089, 2144, 2149, 2348
CviQI	GTAC	5 cut(s)	260, 498, 1316, 1867, 2451
DraI	TTTAAA	1 cut(s)	553
EaeI	YGGCCR	4 cut(s)	336, 1795, 2140, 2422
Eam1104I	CTCTTC	2 cut(s)	1059, 2223
EarI	CTCTTC	2 cut(s)	1059, 2223
EciI	GGCGGA	1 cut(s)	130
Ecl136II	GAGCTC	1 cut(s)	1822
Eco130I	CCWWGG	2 cut(s)	17, 970
Eco147I	AGGCCT	1 cut(s)	16
Eco24I	GRGCYC	1 cut(s)	1824
Eco31I	GGTCTC	2 cut(s)	638, 2130
Eco32I	GATATC	1 cut(s)	627
Eco47I	GGWCC	5 cut(s)	154, 692, 703, 770, 1337
Eco47III	AGCGCT	1 cut(s)	1015
Eco53kI	GAGCTC	1 cut(s)	1822
Eco57I	CTGAAG	4 cut(s)	287, 712, 1083, 1689
Eco88I	CYCGRG	1 cut(s)	2389
Eco91I	GGTNACC	1 cut(s)	1568
EcoICRI	GAGCTC	1 cut(s)	1822
EcoO65I	GGTNACC	1 cut(s)	1568
EcoRI	GAATTC	1 cut(s)	600
EcoRII	CCWGG	2 cut(s)	1318, 1572
EcoRV	GATATC	1 cut(s)	627
EcoT14I	CCWWGG	2 cut(s)	17, 970
EcoT22I	ATGCAT	2 cut(s)	1816, 1927
EcoT38I	GRGCYC	1 cut(s)	1824
ErhI	CCWWGG	2 cut(s)	17, 970
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	9 cut(s)	1121, 1280, 1472, 1806, 1887, 2092, 2147, 2152, 2351
FalI	AAGNNNNNCTT	2 cut(s)	1000, 1032
FaqI	GGGAC	3 cut(s)	758, 1926, 1940
FatI	CATG	9 cut(s)	1117, 1276, 1468, 1802, 1883, 2088, 2143, 2148, 2347
FauNDI	CATATG	3 cut(s)	634, 1024, 1977
FblI	GTMKAC	1 cut(s)	1897
Fnu4HI	GCNGC	4 cut(s)	384, 1426, 1847, 1910
FriOI	GRGCYC	1 cut(s)	1824
Fsp4HI	GCNGC	4 cut(s)	384, 1426, 1847, 1910
FspBI	CTAG	6 cut(s)	698, 1040, 1430, 1451, 1683, 1959
GlaI	GCGC	2 cut(s)	1015, 1046
GluI	GCNGC	4 cut(s)	384, 1426, 1847, 1910
GsaI	CCCAGC	2 cut(s)	1060, 2010
GsuI	CTGGAG	3 cut(s)	1444, 2145, 2232
HaeII	RGCGCY	1 cut(s)	1017
HaeIII	GGCC	8 cut(s)	16, 191, 338, 1135, 1797, 2086, 2142, 2424
HapII	CCGG	5 cut(s)	281, 815, 1136, 1248, 1382
HgaI	GACGC	2 cut(s)	28, 142
HhaI	GCGC	2 cut(s)	1016, 1047
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	9 cut(s)	1121, 1280, 1472, 1806, 1887, 2092, 2147, 2152, 2351
Hin6I	GCGC	2 cut(s)	1014, 1045
HinP1I	GCGC	2 cut(s)	1014, 1045
HincII	GTYRAC	1 cut(s)	1898
HindII	GTYRAC	1 cut(s)	1898
HindIII	AAGCTT	2 cut(s)	431, 1540
HinfI	GANTC	8 cut(s)	329, 595, 1226, 1232, 1262, 1582, 1604, 1939
HpaII	CCGG	5 cut(s)	281, 815, 1136, 1248, 1382
HphI	GGTGA	3 cut(s)	409, 842, 1923
Hpy166II	GTNNAC	3 cut(s)	1127, 1340, 1898
Hpy8I	GTNNAC	3 cut(s)	1127, 1340, 1898
Hpy99I	CGWCG	3 cut(s)	44, 76, 136
HpyAV	CCTTC	7 cut(s)	177, 181, 362, 394, 484, 897, 2322
HpyCH4III	ACNGT	6 cut(s)	620, 1866, 1902, 2189, 2486, 2514
HpyCH4IV	ACGT	6 cut(s)	168, 204, 272, 500, 556, 1789
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 128, 534, 1803, 1855
HpySE526I	ACGT	6 cut(s)	168, 204, 272, 500, 556, 1789
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	9 cut(s)	1121, 1280, 1472, 1806, 1887, 2092, 2147, 2152, 2351
HspAI	GCGC	2 cut(s)	1014, 1045
Kpn2I	TCCGGA	1 cut(s)	1381
LmnI	GCTCC	2 cut(s)	1011, 1618
Lsp1109I	GCAGC	3 cut(s)	370, 1858, 1921
LweI	GCATC	7 cut(s)	801, 940, 1056, 1429, 1480, 1692, 2016
MabI	ACCWGGT	1 cut(s)	1318
MaeI	CTAG	6 cut(s)	698, 1040, 1430, 1451, 1683, 1959
MaeII	ACGT	6 cut(s)	168, 204, 272, 500, 556, 1789
MaeIII	GTNAC	7 cut(s)	330, 371, 1327, 1363, 1568, 1772, 2132
MbiI	CCGCTC	2 cut(s)	122, 178
MflI	RGATCY	2 cut(s)	1147, 1283
MhlI	GDGCHC	3 cut(s)	613, 1033, 1824
MlsI	TGGCCA	3 cut(s)	338, 2142, 2424
MluNI	TGGCCA	3 cut(s)	338, 2142, 2424
MlyI	GAGTC	4 cut(s)	338, 604, 1613, 1948
MmeI	TCCRAC	1 cut(s)	1600
Mox20I	TGGCCA	3 cut(s)	338, 2142, 2424
Mph1103I	ATGCAT	2 cut(s)	1816, 1927
MroI	TCCGGA	1 cut(s)	1381
MscI	TGGCCA	3 cut(s)	338, 2142, 2424
MseI	TTAA	8 cut(s)	413, 429, 552, 573, 936, 954, 1271, 1311
MslI	CAYNNNNRTG	2 cut(s)	1122, 2370
Msp20I	TGGCCA	3 cut(s)	338, 2142, 2424
MspA1I	CMGCKG	1 cut(s)	1553
MspI	CCGG	5 cut(s)	281, 815, 1136, 1248, 1382
MspR9I	CCNGG	3 cut(s)	281, 1320, 1574
Mva1269I	GAATGC	2 cut(s)	1648, 1927
MvaI	CCWGG	2 cut(s)	1320, 1574
MwoI	GCNNNNNNNGC	5 cut(s)	22, 128, 534, 1803, 1855
NciI	CCSGG	1 cut(s)	281
NdeI	CATATG	3 cut(s)	634, 1024, 1977
NlaIII	CATG	9 cut(s)	1121, 1280, 1472, 1806, 1887, 2092, 2147, 2152, 2351
NlaIV	GGNNCC	3 cut(s)	610, 1396, 1614
NmeAIII	GCCGAG	1 cut(s)	782
NmuCI	GTSAC	3 cut(s)	330, 371, 1772
NsiI	ATGCAT	2 cut(s)	1816, 1927
NspI	RCATGY	1 cut(s)	2351
PagI	TCATGA	2 cut(s)	1276, 1468
PceI	AGGCCT	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	2 cut(s)	71, 1795
PctI	GAATGC	2 cut(s)	1648, 1927
PfeI	GAWTC	4 cut(s)	1226, 1232, 1262, 1582
PflFI	GACNNNGTC	1 cut(s)	64
PfoI	TCCNGGA	1 cut(s)	279
PkrI	GCNGC	4 cut(s)	385, 1427, 1848, 1911
PleI	GAGTC	4 cut(s)	337, 603, 1612, 1947
PpsI	GAGTC	4 cut(s)	337, 603, 1612, 1947
Ppu21I	YACGTR	1 cut(s)	1790
PshBI	ATTAAT	1 cut(s)	1311
Psp124BI	GAGCTC	1 cut(s)	1824
Psp6I	CCWGG	2 cut(s)	1318, 1572
PspEI	GGTNACC	1 cut(s)	1568
PspFI	CCCAGC	2 cut(s)	1056, 2006
PspGI	CCWGG	2 cut(s)	1318, 1572
PspN4I	GGNNCC	3 cut(s)	610, 1396, 1614
PspPI	GGNCC	6 cut(s)	154, 692, 703, 770, 1337, 2085
PsuI	RGATCY	2 cut(s)	1147, 1283
PsyI	GACNNNGTC	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	1553
RsaI	GTAC	5 cut(s)	261, 499, 1317, 1868, 2452
RsaNI	GTAC	5 cut(s)	260, 498, 1316, 1867, 2451
RseI	CAYNNNNRTG	2 cut(s)	1122, 2370
SacI	GAGCTC	1 cut(s)	1824
SalI	GTCGAC	1 cut(s)	1896
SaqAI	TTAA	8 cut(s)	413, 429, 552, 573, 936, 954, 1271, 1311
SatI	GCNGC	4 cut(s)	384, 1426, 1847, 1910
Sau96I	GGNCC	6 cut(s)	154, 692, 703, 770, 1337, 2085
SchI	GAGTC	4 cut(s)	338, 604, 1613, 1948
ScrFI	CCNGG	3 cut(s)	281, 1320, 1574
SduI	GDGCHC	3 cut(s)	613, 1033, 1824
SexAI	ACCWGGT	1 cut(s)	1318
SfaNI	GCATC	7 cut(s)	801, 940, 1056, 1429, 1480, 1692, 2016
SinI	GGWCC	5 cut(s)	154, 692, 703, 770, 1337
SmiMI	CAYNNNNRTG	2 cut(s)	1122, 2370
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
SseBI	AGGCCT	1 cut(s)	16
SsiI	CCGC	5 cut(s)	115, 122, 178, 701, 1426
SspI	AATATT	2 cut(s)	457, 1309
SspMI	CTAG	6 cut(s)	698, 1040, 1430, 1451, 1683, 1959
SstI	GAGCTC	1 cut(s)	1824
StuI	AGGCCT	1 cut(s)	16
StyD4I	CCNGG	3 cut(s)	279, 1318, 1572
StyI	CCWWGG	2 cut(s)	17, 970
TaaI	ACNGT	6 cut(s)	620, 1866, 1902, 2189, 2486, 2514
TaiI	ACGT	6 cut(s)	171, 207, 275, 503, 559, 1792
TaqI	TCGA	5 cut(s)	598, 1033, 1897, 2272, 2320
TauI	GCSGC	1 cut(s)	1428
TfiI	GAWTC	4 cut(s)	1226, 1232, 1262, 1582
Tru1I	TTAA	8 cut(s)	413, 429, 552, 573, 936, 954, 1271, 1311
Tru9I	TTAA	8 cut(s)	413, 429, 552, 573, 936, 954, 1271, 1311
TscAI	CASTG	6 cut(s)	339, 1078, 1762, 2124, 2377, 2422
TseFI	GTSAC	3 cut(s)	330, 371, 1772
TseI	GCWGC	3 cut(s)	383, 1846, 1909
Tsp45I	GTSAC	3 cut(s)	330, 371, 1772
TspDTI	ATGAA	8 cut(s)	1239, 1457, 1533, 1653, 1791, 1994, 2291, 2511
TspGWI	ACGGA	2 cut(s)	67, 1419
TspRI	CASTG	6 cut(s)	339, 1078, 1762, 2124, 2377, 2422
Tth111I	GACNNNGTC	1 cut(s)	64
VpaK11BI	GGWCC	5 cut(s)	154, 692, 703, 770, 1337
VspI	ATTAAT	1 cut(s)	1311
XapI	RAATTY	6 cut(s)	600, 713, 734, 851, 2330, 2410
XceI	RCATGY	1 cut(s)	2351
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	1897
XspI	CTAG	6 cut(s)	698, 1040, 1430, 1451, 1683, 1959
Zsp2I	ATGCAT	2 cut(s)	1816, 1927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.