Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0008549

Physical Location & Seq

Genomic Coordinates Forward (+)

8620309 .. 8626484

Gene Structure 6176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG103600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2175 bp

ATGGGCGATCTTAGGCCTTGGTCGCCTGAGCCAAACGGCGTCGTTTCGGAGGAGAGGCCGACCTCGTCTTCTTCGTCCGTGTTTTCAATTTCAACCAATCAGAGGGAGTACTGGCGGAGAGCGGAGGAGGCGACGCAGGGGGTTATAGCTCAGGTCCAGCCTACTCACGTCTCCGAGCGGAGAAGGAAAGCCGTCATTGATTACGTCCAGAGGCTCTTTGGAGGTTGTCTTGGTTGCGAGGTGTTCCCGTTTGGATCAGTACCTCTGAAGACGTATCTCCCGGATGGAGATATTGATCTGACTGCTTTTGGTGGTCTAAATATTGAGGAGTCACTGGCCAATGATGTCTGTGCTGTTCTTGAAAGGGAAGATCACAATATGACCGCTGAGTTTATGGTGAAGGATGTGCAGTTAATTCGGGCTGAGGTTAAGCTTGTAAAGTGCCTTGTGCAAAATATTGTGGTTGATATATCCTTCAATCAGTTAGGAGGGCTATGTACATTATGCTTTCTTGAGCAGGTTGATCGCCTCATTGGCAAAGATCATCTCTTTAAACGTAGTATCATACTGATCAAGGCTTGGTGCTATTACGAGAGTCGAATTCTTGGTGCCCATCACGGTTTGATATCTACATATGGTTTGGAGACCTTAGTTCTTTTTATCTTCCATCTATTCCATACATCTCTGAATGGTCCTCTAGCGGTCCTGTATAAATTCTTGGACTACTTCAGTAAATTTGATTGGGACAACTATTGTATCAGCTTGAATGGTCCAGTTCGCATATCCTCACTTCCTGAACTCTTGGCTGAGATGCCAGATAATGGTAGGGGTGATCTATTGCTCAGTAGCGAATTTCTCAGGAGTTGTGTGGATAGGTTCTCAGTTCCTTCAAGGGGATATGAGACAAATTATAGAACTTTCCAGCCAAAGCATCTTAATATAGTTGATCCACTTAAAGAAAATAACAACCTTGGCAGAAGTGTGAGTAAAGGAAACTTTTACCGAATAAGGAGCGCTTTCACATATGGTGCTCGAAAACTAGGGCACATCCTTTCCCAGCCAGAAGAGAACATTGATGATGAGATTAGAAAGTTCTTCTCAAACACATTGGACAGGCATGGAAGTGGACAGAGGCCGGATGTCCAAGATCCTATTCCATTATCCAGATATGATGGGTTTGGTTCTGCATTGGGTTCAGAGTTGCAAGAAGATAAAGCAGTTTATGAATCCGAATCTGCTTATTCAACCGGCTTGGTTGGGGATTCTGGGTTAAATCATGAGGGATCTTGGGATGGTGGAGATACAAATATTAATGTACCTGGTCAAGTCACAAATGGTCCACCCAAAAGTGATACAGAGTTGGTATCCCCAACAATGTTTCCGGAAATAGAGGGTTCCTCAAACGGAATTGCTGTTTCGGAGTGCCGCCTAGTTGGGGATGCAAAAGACCTAGCTACCTCCAGATTTCATGACCTTACAATTTCAAATGATGCTCAGAAACCATCCCCGTCCAAAGGTGAGATGAGTATGTCTCCTTTGGGTAAAACACAACTTGCACCTCATCTTTATTTCTCTCACTCATCAATGGGAAATGGGAACGTTAGTAATGGAGATGAAGATCACGAACTGCCAGAAAGCTTTGGATCAGCTGAGAATGGGGTTGGTAACCAGGATGAGAATCAATCAGCTTGTAATCAGGAGTCTTTGGCTCCTGTTGGACAAAAGCACCAACTTTCAGACTTGCATTCCATTGTGGGTTCATCTGAAGACTTTTATCCTAGTTATTCTGGTTATCGGATGCCAATTAGCACTACTGGAAGTCCTGAAACTTCTAACCCTTTGTCTGATCTCAGTGGGGAATATGATAGTCACTTACATAACCTACGTTATGGCCGTTCATGCTATGCATACGAGCTCAATGCAGTCCATCATCCCGTGCAGCCTCCAATGCCCTCACAGTACCAGAGAAGTAAGTCATGGGATGTAAGTCGACAGTCTGTGCAGCTCAGACAGAATGCATTTTCACCAATGAGTCCCAATGGTGTTGTCCCTAGACAAGCATTTTACCATATGAACCCACCAATTCTACCTAATGGTGCTGGGTTTGGTATGGAGGAGATGCCAAAACCACGAGGAACTGGAACATACTTTCCCAATACGGTATACTCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

724

Amino Acids

80.3

Weight (kDa)

5.31

Isoelectric Point (pI)

51.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTPAP-like_central	PF22600	46 - 165	3.3e-07	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
PAP-OAS1	PF26180	178 - 370	1e-99	PAP/OAS1 substrate-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51620 AT3G51620 AT3G51620
fragaria_vesca	FvH4_6g10110 FvH4_6g10110 FvH4_6g10110 FvH4_6g10110 FvH4_6g10110
malus_domestica	MD04G1172800.v1.1 MD12G1186100.v1.1
prunus_persica	Prupe.6G291600_v2.0.a1
pyrus_communis	pycom04g15270 pycom12g17470
rosa_chinensis	RchiOBHm_Chr3g0460811
rosa_laevigata	RLG00000024979
rosa_multiflora	Rmu_sc0007678.1_g000014
rosa_roxburghii	Rroxscaffold_6G00419200
rosa_rugosa	Rorug03G0046500
rosa_samantha	Rh3AG103600 Rh3BG107300 Rh3CG109200 Rh3DG109100
rosa_wichuraiana	Rw3G008820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	508
AccB1I	GGYRCC	1 cut(s)	608
AccB7I	CCANNNNNTGG	1 cut(s)	821
AccBSI	CCGCTC	2 cut(s)	122, 178
AccI	GTMKAC	2 cut(s)	1990, 2163
AccIII	TCCGGA	1 cut(s)	1381
AciI	CCGC	6 cut(s)	115, 122, 178, 384, 701, 1426
AclI	AACGTT	1 cut(s)	1599
AclWI	GGATC	5 cut(s)	262, 941, 1142, 1291, 1651
AcoI	YGGCCR	2 cut(s)	336, 1891
AcsI	RAATTY	4 cut(s)	600, 713, 734, 851
AcuI	CTGAAG	3 cut(s)	287, 712, 1785
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	5 cut(s)	110, 261, 499, 1317, 1961
AfeI	AGCGCT	1 cut(s)	1015
AfiI	CCNNNNNNNGG	5 cut(s)	102, 821, 893, 1435, 1514
AgsI	TTSAA	8 cut(s)	87, 93, 362, 478, 766, 891, 1245, 1485
AjiI	CACGTC	1 cut(s)	169
AjnI	CCWGG	2 cut(s)	1318, 1668
AjuI	GAANNNNNNNTTGG	2 cut(s)	1137, 1169
AloI	GAACNNNNNNTCC	2 cut(s)	2134, 2166
AluBI	AGCT	9 cut(s)	149, 433, 762, 1454, 1638, 1649, 1688, 1915, 2005
AluI	AGCT	9 cut(s)	149, 433, 762, 1454, 1638, 1649, 1688, 1915, 2005
Alw21I	GWGCWC	2 cut(s)	1033, 1917
Alw26I	GTCTC	4 cut(s)	175, 638, 896, 1536
AlwI	GGATC	5 cut(s)	262, 941, 1142, 1291, 1651
Aor13HI	TCCGGA	1 cut(s)	1381
Aor51HI	AGCGCT	1 cut(s)	1015
AoxI	GGCC	5 cut(s)	14, 56, 336, 1133, 1891
ApeKI	GCWGC	2 cut(s)	1939, 2002
ApoI	RAATTY	4 cut(s)	600, 713, 734, 851
AseI	ATTAAT	1 cut(s)	1311
AspLEI	GCGC	1 cut(s)	1016
AspS9I	GGNCC	5 cut(s)	154, 692, 703, 770, 1337
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	4 cut(s)	409, 842, 1529, 2016
AvaII	GGWCC	5 cut(s)	154, 692, 703, 770, 1337
BaeGI	GKGCMC	2 cut(s)	613, 1047
BaeI	ACNNNNGTAYC	2 cut(s)	739, 772
BalI	TGGCCA	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	608
BanII	GRGCYC	1 cut(s)	1917
BauI	CACGAG	1 cut(s)	2130
BbsI	GAAGAC	3 cut(s)	60, 275, 1773
Bbv12I	GWGCWC	2 cut(s)	1033, 1917
BbvCI	CCTCAGC	1 cut(s)	423
BbvI	GCAGC	2 cut(s)	1951, 2014
BccI	CCATC	7 cut(s)	278, 621, 675, 1166, 1286, 1510, 1935
BceAI	ACGGC	3 cut(s)	52, 176, 1878
BcgI	CGANNNNNNTGC	6 cut(s)	398, 432, 506, 540, 1901, 1935
BciT130I	CCWGG	2 cut(s)	1320, 1670
BciVI	GTATCC	1 cut(s)	1375
BclI	TGATCA	1 cut(s)	570
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	4 cut(s)	175, 638, 896, 1536
BfaI	CTAG	6 cut(s)	698, 1040, 1430, 1451, 1779, 2052
BfoI	RGCGCY	1 cut(s)	1017
BfuAI	ACCTGC	1 cut(s)	508
BfuI	GTATCC	1 cut(s)	1375
BglI	GCCNNNNNGGC	1 cut(s)	534
BisI	GCNGC	3 cut(s)	1426, 1940, 2003
BlsI	GCNGC	3 cut(s)	1427, 1941, 2004
BmcAI	AGTACT	1 cut(s)	110
Bme1390I	CCNGG	3 cut(s)	281, 1320, 1670
Bme18I	GGWCC	5 cut(s)	154, 692, 703, 770, 1337
BmgBI	CACGTC	1 cut(s)	169
BmgT120I	GGNCC	5 cut(s)	154, 692, 703, 770, 1337
BmiI	GGNNCC	3 cut(s)	610, 1396, 1710
BmrFI	CCNGG	3 cut(s)	281, 1320, 1670
BmsI	GCATC	6 cut(s)	801, 940, 1429, 1480, 1788, 2109
BpiI	GAAGAC	3 cut(s)	60, 275, 1773
BplI	GAGNNNNNCTC	4 cut(s)	1382, 1414, 1516, 1548
BpmI	CTGGAG	1 cut(s)	1444
Bpu10I	CCTNAGC	3 cut(s)	27, 150, 423
BpuEI	CTTGAG	1 cut(s)	533
BpuMI	CCSGG	1 cut(s)	281
BsaBI	GATNNNNATC	3 cut(s)	294, 1617, 1677
BsaHI	GRCGYC	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	638
BsaJI	CCNNGG	2 cut(s)	17, 970
BsaWI	WCCGGW	1 cut(s)	1381
Bsc4I	CCNNNNNNNGG	5 cut(s)	102, 821, 893, 1435, 1514
Bse118I	RCCGGY	1 cut(s)	1247
Bse1I	ACTGG	5 cut(s)	116, 339, 773, 1819, 2143
Bse8I	GATNNNNATC	3 cut(s)	294, 1617, 1677
BseAI	TCCGGA	1 cut(s)	1381
BseBI	CCWGG	2 cut(s)	1320, 1670
BseDI	CCNNGG	2 cut(s)	17, 970
BseJI	GATNNNNATC	3 cut(s)	294, 1617, 1677
BseLI	CCNNNNNNNGG	5 cut(s)	102, 821, 893, 1435, 1514
BseNI	ACTGG	5 cut(s)	116, 339, 773, 1819, 2143
BseRI	GAGGAG	4 cut(s)	65, 140, 341, 2129
BseSI	GKGCMC	2 cut(s)	613, 1047
BseXI	GCAGC	2 cut(s)	1951, 2014
BseYI	CCCAGC	2 cut(s)	1056, 2099
BsgI	GTGCAG	3 cut(s)	428, 1958, 2021
BshFI	GGCC	5 cut(s)	16, 58, 338, 1135, 1893
BshNI	GGYRCC	1 cut(s)	608
BsiHKAI	GWGCWC	2 cut(s)	1033, 1917
BsiSI	CCGG	4 cut(s)	281, 1136, 1248, 1382
BslFI	GGGAC	3 cut(s)	758, 2019, 2033
BslI	CCNNNNNNNGG	5 cut(s)	102, 821, 893, 1435, 1514
BsmAI	GTCTC	4 cut(s)	175, 638, 896, 1536
BsmBI	CGTCTC	1 cut(s)	175
BsmFI	GGGAC	3 cut(s)	758, 2019, 2033
BsmI	GAATGC	2 cut(s)	1744, 2020
BsnI	GGCC	5 cut(s)	16, 58, 338, 1135, 1893
Bso31I	GGTCTC	1 cut(s)	638
Bsp1286I	GDGCHC	4 cut(s)	613, 1033, 1047, 1917
Bsp13I	TCCGGA	1 cut(s)	1381
Bsp1407I	TGTACA	1 cut(s)	497
BspACI	CCGC	6 cut(s)	115, 122, 178, 384, 701, 1426
BspANI	GGCC	5 cut(s)	16, 58, 338, 1135, 1893
BspEI	TCCGGA	1 cut(s)	1381
BspHI	TCATGA	2 cut(s)	1276, 1468
BspLI	GGNNCC	3 cut(s)	610, 1396, 1710
BspMI	ACCTGC	1 cut(s)	508
BspPI	GGATC	5 cut(s)	262, 941, 1142, 1291, 1651
BspT107I	GGYRCC	1 cut(s)	608
BspTNI	GGTCTC	1 cut(s)	638
BsrBI	CCGCTC	2 cut(s)	122, 178
BsrFI	RCCGGY	1 cut(s)	1247
BsrGI	TGTACA	1 cut(s)	497
BsrI	ACTGG	5 cut(s)	116, 339, 773, 1819, 2143
BssAI	RCCGGY	1 cut(s)	1247
BssECI	CCNNGG	2 cut(s)	17, 970
BssNAI	GTATAC	1 cut(s)	2164
BssNI	GRCGYC	1 cut(s)	39
BssSI	CACGAG	1 cut(s)	2130
BssT1I	CCWWGG	2 cut(s)	17, 970
Bst1107I	GTATAC	1 cut(s)	2164
Bst2BI	CACGAG	1 cut(s)	2130
Bst2UI	CCWGG	2 cut(s)	1320, 1670
Bst4CI	ACNGT	4 cut(s)	620, 1959, 1995, 2161
Bst6I	CTCTTC	1 cut(s)	1059
BstACI	GRCGYC	1 cut(s)	39
BstAUI	TGTACA	1 cut(s)	497
BstEII	GGTNACC	1 cut(s)	1664
BstH2I	RGCGCY	1 cut(s)	1017
BstHHI	GCGC	1 cut(s)	1016
BstMAI	GTCTC	4 cut(s)	175, 638, 896, 1536
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 128, 534, 1899, 1948
BstNI	CCWGG	2 cut(s)	1320, 1670
BstPI	GGTNACC	1 cut(s)	1664
BstSCI	CCNGG	3 cut(s)	279, 1318, 1668
BstSLI	GKGCMC	2 cut(s)	613, 1047
BstV1I	GCAGC	2 cut(s)	1951, 2014
BstV2I	GAAGAC	3 cut(s)	60, 275, 1773
BstX2I	RGATCY	2 cut(s)	1147, 1283
BstYI	RGATCY	2 cut(s)	1147, 1283
BstZ17I	GTATAC	1 cut(s)	2164
BsuI	GTATCC	1 cut(s)	1375
BsuRI	GGCC	5 cut(s)	16, 58, 338, 1135, 1893
BtrI	CACGTC	1 cut(s)	169
BtsIMutI	CAGTG	2 cut(s)	332, 1858
BveI	ACCTGC	1 cut(s)	508
CciI	TCATGA	2 cut(s)	1276, 1468
CfoI	GCGC	1 cut(s)	1016
Cfr10I	RCCGGY	1 cut(s)	1247
Cfr13I	GGNCC	5 cut(s)	154, 692, 703, 770, 1337
CseI	GACGC	2 cut(s)	28, 142
CsiI	ACCWGGT	1 cut(s)	1318
Csp6I	GTAC	5 cut(s)	109, 260, 498, 1316, 1960
CviAII	CATG	5 cut(s)	1118, 1277, 1469, 1899, 1977
CviQI	GTAC	5 cut(s)	109, 260, 498, 1316, 1960
DraI	TTTAAA	1 cut(s)	553
EaeI	YGGCCR	2 cut(s)	336, 1891
Eam1104I	CTCTTC	1 cut(s)	1059
EarI	CTCTTC	1 cut(s)	1059
EciI	GGCGGA	1 cut(s)	130
Ecl136II	GAGCTC	1 cut(s)	1915
Eco130I	CCWWGG	2 cut(s)	17, 970
Eco147I	AGGCCT	1 cut(s)	16
Eco24I	GRGCYC	1 cut(s)	1917
Eco31I	GGTCTC	1 cut(s)	638
Eco32I	GATATC	1 cut(s)	627
Eco47I	GGWCC	5 cut(s)	154, 692, 703, 770, 1337
Eco47III	AGCGCT	1 cut(s)	1015
Eco53kI	GAGCTC	1 cut(s)	1915
Eco57I	CTGAAG	3 cut(s)	287, 712, 1785
Eco91I	GGTNACC	1 cut(s)	1664
EcoICRI	GAGCTC	1 cut(s)	1915
EcoO65I	GGTNACC	1 cut(s)	1664
EcoRI	GAATTC	1 cut(s)	600
EcoRII	CCWGG	2 cut(s)	1318, 1668
EcoRV	GATATC	1 cut(s)	627
EcoT14I	CCWWGG	2 cut(s)	17, 970
EcoT22I	ATGCAT	2 cut(s)	1909, 2020
EcoT38I	GRGCYC	1 cut(s)	1917
ErhI	CCWWGG	2 cut(s)	17, 970
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	5 cut(s)	1121, 1280, 1472, 1902, 1980
FalI	AAGNNNNNCTT	2 cut(s)	1000, 1032
FaqI	GGGAC	3 cut(s)	758, 2019, 2033
FatI	CATG	5 cut(s)	1117, 1276, 1468, 1898, 1976
FauNDI	CATATG	3 cut(s)	634, 1024, 2070
FbaI	TGATCA	1 cut(s)	570
FblI	GTMKAC	2 cut(s)	1990, 2163
Fnu4HI	GCNGC	3 cut(s)	1426, 1940, 2003
FriOI	GRGCYC	1 cut(s)	1917
Fsp4HI	GCNGC	3 cut(s)	1426, 1940, 2003
FspBI	CTAG	6 cut(s)	698, 1040, 1430, 1451, 1779, 2052
GlaI	GCGC	1 cut(s)	1015
GluI	GCNGC	3 cut(s)	1426, 1940, 2003
GsaI	CCCAGC	2 cut(s)	1060, 2103
GsuI	CTGGAG	1 cut(s)	1444
HaeII	RGCGCY	1 cut(s)	1017
HaeIII	GGCC	5 cut(s)	16, 58, 338, 1135, 1893
HapII	CCGG	4 cut(s)	281, 1136, 1248, 1382
HgaI	GACGC	2 cut(s)	28, 142
HhaI	GCGC	1 cut(s)	1016
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	5 cut(s)	1121, 1280, 1472, 1902, 1980
Hin6I	GCGC	1 cut(s)	1014
HinP1I	GCGC	1 cut(s)	1014
HincII	GTYRAC	1 cut(s)	1991
HindII	GTYRAC	1 cut(s)	1991
HindIII	AAGCTT	2 cut(s)	431, 1636
HinfI	GANTC	8 cut(s)	329, 595, 1226, 1232, 1262, 1678, 1700, 2032
HpaII	CCGG	4 cut(s)	281, 1136, 1248, 1382
HphI	GGTGA	4 cut(s)	409, 842, 1529, 2016
Hpy166II	GTNNAC	4 cut(s)	1127, 1340, 1991, 2164
Hpy8I	GTNNAC	4 cut(s)	1127, 1340, 1991, 2164
Hpy99I	CGWCG	2 cut(s)	44, 136
HpyAV	CCTTC	4 cut(s)	177, 394, 484, 897
HpyCH4III	ACNGT	4 cut(s)	620, 1959, 1995, 2161
HpyCH4IV	ACGT	6 cut(s)	168, 204, 272, 556, 1599, 1885
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 128, 534, 1899, 1948
HpySE526I	ACGT	6 cut(s)	168, 204, 272, 556, 1599, 1885
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	5 cut(s)	1121, 1280, 1472, 1902, 1980
HspAI	GCGC	1 cut(s)	1014
Kpn2I	TCCGGA	1 cut(s)	1381
Ksp22I	TGATCA	1 cut(s)	570
LmnI	GCTCC	2 cut(s)	1011, 1714
Lsp1109I	GCAGC	2 cut(s)	1951, 2014
LweI	GCATC	6 cut(s)	801, 940, 1429, 1480, 1788, 2109
MabI	ACCWGGT	1 cut(s)	1318
MaeI	CTAG	6 cut(s)	698, 1040, 1430, 1451, 1779, 2052
MaeII	ACGT	6 cut(s)	168, 204, 272, 556, 1599, 1885
MaeIII	GTNAC	4 cut(s)	330, 1327, 1664, 1868
MbiI	CCGCTC	2 cut(s)	122, 178
MflI	RGATCY	2 cut(s)	1147, 1283
MhlI	GDGCHC	4 cut(s)	613, 1033, 1047, 1917
MlsI	TGGCCA	1 cut(s)	338
MluNI	TGGCCA	1 cut(s)	338
MlyI	GAGTC	4 cut(s)	338, 604, 1709, 2041
MmeI	TCCRAC	1 cut(s)	1696
Mox20I	TGGCCA	1 cut(s)	338
Mph1103I	ATGCAT	2 cut(s)	1909, 2020
MroI	TCCGGA	1 cut(s)	1381
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	7 cut(s)	413, 429, 552, 936, 954, 1271, 1311
MslI	CAYNNNNRTG	1 cut(s)	1122
Msp20I	TGGCCA	1 cut(s)	338
MspA1I	CMGCKG	2 cut(s)	386, 1649
MspI	CCGG	4 cut(s)	281, 1136, 1248, 1382
MspR9I	CCNGG	3 cut(s)	281, 1320, 1670
Mva1269I	GAATGC	2 cut(s)	1744, 2020
MvaI	CCWGG	2 cut(s)	1320, 1670
MwoI	GCNNNNNNNGC	5 cut(s)	22, 128, 534, 1899, 1948
NciI	CCSGG	1 cut(s)	281
NdeI	CATATG	3 cut(s)	634, 1024, 2070
NlaIII	CATG	5 cut(s)	1121, 1280, 1472, 1902, 1980
NlaIV	GGNNCC	3 cut(s)	610, 1396, 1710
NmuCI	GTSAC	3 cut(s)	330, 1327, 1868
NsiI	ATGCAT	2 cut(s)	1909, 2020
PagI	TCATGA	2 cut(s)	1276, 1468
PceI	AGGCCT	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	2 cut(s)	71, 1891
PctI	GAATGC	2 cut(s)	1744, 2020
PfeI	GAWTC	4 cut(s)	1226, 1232, 1262, 1678
PflFI	GACNNNGTC	1 cut(s)	64
PflMI	CCANNNNNTGG	1 cut(s)	821
PfoI	TCCNGGA	1 cut(s)	279
PkrI	GCNGC	3 cut(s)	1427, 1941, 2004
PleI	GAGTC	4 cut(s)	337, 603, 1708, 2040
PpsI	GAGTC	4 cut(s)	337, 603, 1708, 2040
PshBI	ATTAAT	1 cut(s)	1311
Psp124BI	GAGCTC	1 cut(s)	1917
Psp1406I	AACGTT	1 cut(s)	1599
Psp6I	CCWGG	2 cut(s)	1318, 1668
PspEI	GGTNACC	1 cut(s)	1664
PspFI	CCCAGC	2 cut(s)	1056, 2099
PspGI	CCWGG	2 cut(s)	1318, 1668
PspN4I	GGNNCC	3 cut(s)	610, 1396, 1710
PspPI	GGNCC	5 cut(s)	154, 692, 703, 770, 1337
PsuI	RGATCY	2 cut(s)	1147, 1283
PsyI	GACNNNGTC	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	1649
RsaI	GTAC	5 cut(s)	110, 261, 499, 1317, 1961
RsaNI	GTAC	5 cut(s)	109, 260, 498, 1316, 1960
RseI	CAYNNNNRTG	1 cut(s)	1122
SacI	GAGCTC	1 cut(s)	1917
SalI	GTCGAC	1 cut(s)	1989
SaqAI	TTAA	7 cut(s)	413, 429, 552, 936, 954, 1271, 1311
SatI	GCNGC	3 cut(s)	1426, 1940, 2003
Sau96I	GGNCC	5 cut(s)	154, 692, 703, 770, 1337
ScaI	AGTACT	1 cut(s)	110
SchI	GAGTC	4 cut(s)	338, 604, 1709, 2041
ScrFI	CCNGG	3 cut(s)	281, 1320, 1670
SduI	GDGCHC	4 cut(s)	613, 1033, 1047, 1917
SexAI	ACCWGGT	1 cut(s)	1318
SfaNI	GCATC	6 cut(s)	801, 940, 1429, 1480, 1788, 2109
SinI	GGWCC	5 cut(s)	154, 692, 703, 770, 1337
SmiMI	CAYNNNNRTG	1 cut(s)	1122
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
SseBI	AGGCCT	1 cut(s)	16
SsiI	CCGC	6 cut(s)	115, 122, 178, 384, 701, 1426
SspI	AATATT	3 cut(s)	322, 457, 1309
SspMI	CTAG	6 cut(s)	698, 1040, 1430, 1451, 1779, 2052
SstI	GAGCTC	1 cut(s)	1917
StuI	AGGCCT	1 cut(s)	16
StyD4I	CCNGG	3 cut(s)	279, 1318, 1668
StyI	CCWWGG	2 cut(s)	17, 970
TaaI	ACNGT	4 cut(s)	620, 1959, 1995, 2161
TaiI	ACGT	6 cut(s)	171, 207, 275, 559, 1602, 1888
TaqI	TCGA	3 cut(s)	598, 1033, 1990
TatI	WGTACW	2 cut(s)	108, 497
TauI	GCSGC	1 cut(s)	1428
TfiI	GAWTC	4 cut(s)	1226, 1232, 1262, 1678
Tru1I	TTAA	7 cut(s)	413, 429, 552, 936, 954, 1271, 1311
Tru9I	TTAA	7 cut(s)	413, 429, 552, 936, 954, 1271, 1311
TscAI	CASTG	2 cut(s)	339, 1858
TseFI	GTSAC	3 cut(s)	330, 1327, 1868
TseI	GCWGC	2 cut(s)	1939, 2002
Tsp45I	GTSAC	3 cut(s)	330, 1327, 1868
TspDTI	ATGAA	6 cut(s)	1239, 1457, 1629, 1749, 1887, 2087
TspGWI	ACGGA	2 cut(s)	67, 1419
TspRI	CASTG	2 cut(s)	339, 1858
Tth111I	GACNNNGTC	1 cut(s)	64
Van91I	CCANNNNNTGG	1 cut(s)	821
VpaK11BI	GGWCC	5 cut(s)	154, 692, 703, 770, 1337
VspI	ATTAAT	1 cut(s)	1311
XapI	RAATTY	4 cut(s)	600, 713, 734, 851
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215
XmiI	GTMKAC	2 cut(s)	1990, 2163
XspI	CTAG	6 cut(s)	698, 1040, 1430, 1451, 1779, 2052
ZrmI	AGTACT	1 cut(s)	110
Zsp2I	ATGCAT	2 cut(s)	1909, 2020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.