RLG00000024979

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0008549
Physical Location & Seq
Reverse (-)
41022518 .. 41025777
3260 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024979

Sequence Viewer

Length: 1836 bp
ATGTCCATTAAAAATTTCTGTTTCACCGCTACTGAGATGCCAGATAATGGTGGGGGTGATCTATTGCTCAGTAGCGAATTTCTCAGGAATTGTGTGGATAGGTTCTCAGTTCCTTCAAGGGGATATGAGACAAATTATAGAACTTTCCAGCCAAAGCATCTTAATATAGTTGATCCACTTAAAGAAAATAACAACCTTGGCAGAAGTGTGAGTAAAGGAAATTTTTACCGAATAAGGAGCGCTTTTACATATGGTGCTCGAAAACTAGGGCGCATCCTTTCCCAGCCAGAAGAGAACATTGATGATGAGATTAGAAAGTTCTTCTCAAACACATTGGACAGGCATGGAAGTGGACAGAGGCCGGATGTCCAAGATCCTATTCCATTATCCAGATATGATGGGTTTGGTTCTGCATTGGGTTCAGAGTTGCAAGAAGATAAAGCAGTTTATGAATCTGAATCTGCTTATTCAACCGGCATGGTTGGGGATTCTGGGTTAAATCATGAGGGATCTTGGGATGGTGGAGATACAAATATTATTGTACCTGGTCAAGTTACAAATGGTCCACCCAAAAGTGATACAGCGTTAGTATCCCCAACAATGTTTCCGGAAATAGAGGGTTCCTCAAACGGAATTGCTGTTTCGGAGTGCCGCCTAGTTGGGGATGCAAAAGACCTAGCTACCTCCAGATTTCATGACCTTACAATTTCAAATGCTCAGAAACAATCCCCGTCCAAAGGTGAGATGAGTATGTCTCCTTTGGGTAAAACACAACTTGCAAATCATCTTTATTTCTCTCACTCATCAATGGGAAATGGGAACATTAGTAATGGAGATGAAGATCACGAACTGCCAGAAAGCTTTGGATCAGCTGAGAATAGGGTTGGTAACCAGGATGAGAATCAATCAGCTTGTAATCATTTGGCTCCTGTTGGACAAAAGCACCAACTTTCACGCTTGCATTCCATTGTGGGTTCATCTGAAGACTTTTATCCTAGTTATTCTGGTTATCGGATGCCAATTAGCACTACTGGAAGTCCTGAAACTTCTAACCCTTTGTCTGATCTCAGTGGGGAATACGATAGTCACTTACATAACCTGCGTTATGGCCGTTCATGCTATGCATACGAGCTCAATGCAGTCCATCATCCCGTGCAGCCTCCAATGCCCTCACAGTACCAGAGAAGTAAGTCATGGGATGTAAGTCGACAGTCTGTGCAGCTCAGACAAAATGCATTTTCACCAATGAGTCCCAATGGTGTTGTCCCTAGACAAGCATTTTACCATGTGAACCCACCAATGCTACCTAATGGTGCTGGGTTTGGTATGGAGGAGATGCCAAAACCACGAGGAACTGGAACATACTTTCCCAATACGAACCATTACAGAGATAGGCCCATGACAACAAGGGGAAGAAATCAAGCACCAGTGAGGTCTCCTCGTAACAATGGCCATGCCATGATACCACCTCCTGAAAATAATTTTCCTGACAGAAACAGCCGTGAGCTATCACAAGCCCAAATGCCTCTTCAAAAAGGTGGGGGAAAGTGTGGTTCTCCAGATAGCCCCACCAGCTCCCCTCGAATGAAAGCATATCCCAGTGCCAATGGGTCAATACATCCTTCTGATCGAATTGTAGAATTTGGGTCAGTTGAGCATGTGTCATTAGAGGCACCTCCCAGTGGCAGGCAAACAAACTCAGGATCATCATCCAGTCAAAATTCCAGTGTTGGCCAAGCCTCAACAAACTTGGAATTGGGTACAGATCAAGATAGGATTTCTGTGCAGTCATACCGTTTGAAAGATGAAGATGATTTCCCACCGTTGTCAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

612

Amino Acids

66.91

Weight (kDa)

5.96

Isoelectric Point (pI)

54.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP-OAS1 PF26180 9 - 112 2.4e-37 PAP/OAS1 substrate-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1107
AccB1I GGYRCC 1 cut(s) 1672
AccB7I CCANNNNNTGG 1 cut(s) 47
AccI GTMKAC 1 cut(s) 1207
AccIII TCCGGA 1 cut(s) 607
AciI CCGC 2 cut(s) 27, 652
AclWI GGATC 5 cut(s) 167, 368, 517, 874, 1711
AcoI YGGCCR 3 cut(s) 1108, 1450, 1732
AcsI RAATTY 5 cut(s) 13, 77, 220, 1640, 1720
AcuI CTGAAG 1 cut(s) 1002
AfaI GTAC 3 cut(s) 543, 1178, 1762
AfeI AGCGCT 1 cut(s) 241
AfiI CCNNNNNNNGG 6 cut(s) 47, 119, 661, 737, 1682, 1686
AgsI TTSAA 5 cut(s) 117, 471, 711, 1532, 1801
AjnI CCWGG 2 cut(s) 544, 891
AjuI GAANNNNNNNTTGG 4 cut(s) 363, 395, 1512, 1544
AloI GAACNNNNNNTCC 2 cut(s) 1351, 1383
AluBI AGCT 8 cut(s) 680, 861, 872, 911, 1132, 1222, 1507, 1575
AluI AGCT 8 cut(s) 680, 861, 872, 911, 1132, 1222, 1507, 1575
Alw21I GWGCWC 2 cut(s) 259, 1134
Alw26I GTCTC 3 cut(s) 122, 759, 1440
AlwI GGATC 5 cut(s) 167, 368, 517, 874, 1711
Aor13HI TCCGGA 1 cut(s) 607
Aor51HI AGCGCT 1 cut(s) 241
AoxI GGCC 5 cut(s) 359, 1108, 1394, 1450, 1732
ApeKI GCWGC 2 cut(s) 1156, 1219
ApoI RAATTY 5 cut(s) 13, 77, 220, 1640, 1720
AspLEI GCGC 2 cut(s) 242, 273
AspS9I GGNCC 2 cut(s) 563, 1395
AsuHPI GGTGA 4 cut(s) 16, 68, 752, 1233
AvaII GGWCC 1 cut(s) 563
BalI TGGCCA 2 cut(s) 1452, 1734
BanI GGYRCC 1 cut(s) 1672
BanII GRGCYC 1 cut(s) 1134
BauI CACGAG 1 cut(s) 1347
BbsI GAAGAC 1 cut(s) 990
Bbv12I GWGCWC 2 cut(s) 259, 1134
BbvI GCAGC 2 cut(s) 1168, 1231
BccI CCATC 3 cut(s) 392, 512, 1152
BceAI ACGGC 2 cut(s) 1095, 1485
BcgI CGANNNNNNTGC 2 cut(s) 1118, 1152
BciT130I CCWGG 2 cut(s) 546, 893
BciVI GTATCC 1 cut(s) 601
BcoDI GTCTC 3 cut(s) 122, 759, 1440
BfaI CTAG 5 cut(s) 266, 656, 677, 996, 1269
BfoI RGCGCY 1 cut(s) 243
BfuAI ACCTGC 1 cut(s) 1107
BfuI GTATCC 1 cut(s) 601
BisI GCNGC 3 cut(s) 652, 1157, 1220
BlsI GCNGC 3 cut(s) 653, 1158, 1221
Bme1390I CCNGG 2 cut(s) 546, 893
Bme18I GGWCC 1 cut(s) 563
BmgT120I GGNCC 2 cut(s) 563, 1395
BmiI GGNNCC 3 cut(s) 622, 927, 1674
BmrFI CCNGG 2 cut(s) 546, 893
BmrI ACTGGG 2 cut(s) 1593, 1674
BmsI GCATC 6 cut(s) 27, 166, 282, 655, 1005, 1326
BmuI ACTGGG 2 cut(s) 1593, 1674
BpiI GAAGAC 1 cut(s) 990
BplI GAGNNNNNCTC 6 cut(s) 608, 640, 739, 771, 1423, 1455
BpmI CTGGAG 2 cut(s) 670, 1542
BsaBI GATNNNNATC 3 cut(s) 840, 900, 1708
BsaI GGTCTC 1 cut(s) 1440
BsaJI CCNNGG 1 cut(s) 196
BsaWI WCCGGW 1 cut(s) 607
Bsc4I CCNNNNNNNGG 6 cut(s) 47, 119, 661, 737, 1682, 1686
Bse118I RCCGGY 1 cut(s) 473
Bse1I ACTGG 7 cut(s) 1036, 1360, 1427, 1599, 1680, 1713, 1725
Bse8I GATNNNNATC 3 cut(s) 840, 900, 1708
BseAI TCCGGA 1 cut(s) 607
BseBI CCWGG 2 cut(s) 546, 893
BseDI CCNNGG 1 cut(s) 196
BseJI GATNNNNATC 3 cut(s) 840, 900, 1708
BseLI CCNNNNNNNGG 6 cut(s) 47, 119, 661, 737, 1682, 1686
BseMII CTCAG 9 cut(s) 24, 82, 97, 120, 731, 864, 1081, 1237, 1713
BseNI ACTGG 7 cut(s) 1036, 1360, 1427, 1599, 1680, 1713, 1725
BseRI GAGGAG 2 cut(s) 1346, 1428
BseXI GCAGC 2 cut(s) 1168, 1231
BseYI CCCAGC 2 cut(s) 282, 1316
BsgI GTGCAG 3 cut(s) 1175, 1238, 1805
BshFI GGCC 5 cut(s) 361, 1110, 1396, 1452, 1734
BshNI GGYRCC 1 cut(s) 1672
BsiHKAI GWGCWC 2 cut(s) 259, 1134
BsiSI CCGG 3 cut(s) 362, 474, 608
BslFI GGGAC 2 cut(s) 1236, 1250
BslI CCNNNNNNNGG 6 cut(s) 47, 119, 661, 737, 1682, 1686
BsmAI GTCTC 3 cut(s) 122, 759, 1440
BsmFI GGGAC 2 cut(s) 1236, 1250
BsmI GAATGC 1 cut(s) 961
BsnI GGCC 5 cut(s) 361, 1110, 1396, 1452, 1734
Bso31I GGTCTC 1 cut(s) 1440
Bsp1286I GDGCHC 2 cut(s) 259, 1134
Bsp13I TCCGGA 1 cut(s) 607
BspACI CCGC 2 cut(s) 27, 652
BspANI GGCC 5 cut(s) 361, 1110, 1396, 1452, 1734
BspCNI CTCAG 9 cut(s) 25, 81, 96, 119, 730, 865, 1080, 1236, 1712
BspEI TCCGGA 1 cut(s) 607
BspHI TCATGA 2 cut(s) 502, 694
BspLI GGNNCC 3 cut(s) 622, 927, 1674
BspMI ACCTGC 1 cut(s) 1107
BspPI GGATC 5 cut(s) 167, 368, 517, 874, 1711
BspT107I GGYRCC 1 cut(s) 1672
BspTNI GGTCTC 1 cut(s) 1440
BsrFI RCCGGY 1 cut(s) 473
BsrI ACTGG 7 cut(s) 1036, 1360, 1427, 1599, 1680, 1713, 1725
BssAI RCCGGY 1 cut(s) 473
BssECI CCNNGG 1 cut(s) 196
BssSI CACGAG 1 cut(s) 1347
BssT1I CCWWGG 1 cut(s) 196
Bst2BI CACGAG 1 cut(s) 1347
Bst2UI CCWGG 2 cut(s) 546, 893
Bst4CI ACNGT 4 cut(s) 1176, 1212, 1796, 1824
Bst6I CTCTTC 2 cut(s) 285, 1533
BstC8I GCNNGC 2 cut(s) 959, 1688
BstDEI CTNAG 9 cut(s) 33, 68, 83, 106, 717, 873, 1067, 1223, 1699
BstEII GGTNACC 1 cut(s) 887
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 2 cut(s) 242, 273
BstMAI GTCTC 3 cut(s) 122, 759, 1440
BstMWI GCNNNNNNNGC 3 cut(s) 1116, 1165, 1572
BstNI CCWGG 2 cut(s) 546, 893
BstNSI RCATGY 1 cut(s) 1661
BstPI GGTNACC 1 cut(s) 887
BstSCI CCNGG 2 cut(s) 544, 891
BstV1I GCAGC 2 cut(s) 1168, 1231
BstV2I GAAGAC 1 cut(s) 990
BstX2I RGATCY 2 cut(s) 373, 509
BstYI RGATCY 2 cut(s) 373, 509
BsuI GTATCC 1 cut(s) 601
BsuRI GGCC 5 cut(s) 361, 1110, 1396, 1452, 1734
BtsIMutI CAGTG 5 cut(s) 1075, 1434, 1606, 1687, 1732
BveI ACCTGC 1 cut(s) 1107
Cac8I GCNNGC 2 cut(s) 959, 1688
CciI TCATGA 2 cut(s) 502, 694
CfoI GCGC 2 cut(s) 242, 273
Cfr10I RCCGGY 1 cut(s) 473
Cfr13I GGNCC 2 cut(s) 563, 1395
CsiI ACCWGGT 1 cut(s) 544
Csp6I GTAC 3 cut(s) 542, 1177, 1761
CviQI GTAC 3 cut(s) 542, 1177, 1761
DdeI CTNAG 9 cut(s) 33, 68, 83, 106, 717, 873, 1067, 1223, 1699
EaeI YGGCCR 3 cut(s) 1108, 1450, 1732
Eam1104I CTCTTC 2 cut(s) 285, 1533
EarI CTCTTC 2 cut(s) 285, 1533
Ecl136II GAGCTC 1 cut(s) 1132
Eco130I CCWWGG 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 1134
Eco31I GGTCTC 1 cut(s) 1440
Eco47I GGWCC 1 cut(s) 563
Eco47III AGCGCT 1 cut(s) 241
Eco53kI GAGCTC 1 cut(s) 1132
Eco57I CTGAAG 1 cut(s) 1002
Eco91I GGTNACC 1 cut(s) 887
EcoICRI GAGCTC 1 cut(s) 1132
EcoO65I GGTNACC 1 cut(s) 887
EcoRII CCWGG 2 cut(s) 544, 891
EcoT14I CCWWGG 1 cut(s) 196
EcoT22I ATGCAT 2 cut(s) 1126, 1237
EcoT38I GRGCYC 1 cut(s) 1134
ErhI CCWWGG 1 cut(s) 196
FalI AAGNNNNNCTT 2 cut(s) 226, 258
FaqI GGGAC 2 cut(s) 1236, 1250
FauNDI CATATG 1 cut(s) 250
FblI GTMKAC 1 cut(s) 1207
Fnu4HI GCNGC 3 cut(s) 652, 1157, 1220
FriOI GRGCYC 1 cut(s) 1134
Fsp4HI GCNGC 3 cut(s) 652, 1157, 1220
FspBI CTAG 5 cut(s) 266, 656, 677, 996, 1269
GlaI GCGC 2 cut(s) 241, 272
GluI GCNGC 3 cut(s) 652, 1157, 1220
GsaI CCCAGC 2 cut(s) 286, 1320
GsuI CTGGAG 2 cut(s) 670, 1542
HaeII RGCGCY 1 cut(s) 243
HaeIII GGCC 5 cut(s) 361, 1110, 1396, 1452, 1734
HapII CCGG 3 cut(s) 362, 474, 608
HhaI GCGC 2 cut(s) 242, 273
Hin6I GCGC 2 cut(s) 240, 271
HinP1I GCGC 2 cut(s) 240, 271
HincII GTYRAC 1 cut(s) 1208
HindII GTYRAC 1 cut(s) 1208
HindIII AAGCTT 1 cut(s) 859
HinfI GANTC 5 cut(s) 452, 458, 488, 901, 1249
HpaII CCGG 3 cut(s) 362, 474, 608
HphI GGTGA 4 cut(s) 16, 68, 752, 1233
Hpy166II GTNNAC 4 cut(s) 353, 566, 1208, 1291
Hpy188I TCNGA 9 cut(s) 424, 457, 646, 720, 982, 1014, 1063, 1226, 1627
Hpy8I GTNNAC 4 cut(s) 353, 566, 1208, 1291
HpyAV CCTTC 2 cut(s) 123, 1632
HpyCH4III ACNGT 4 cut(s) 1176, 1212, 1796, 1824
HpyF10VI GCNNNNNNNGC 3 cut(s) 1116, 1165, 1572
HpyF3I CTNAG 9 cut(s) 33, 68, 83, 106, 717, 873, 1067, 1223, 1699
HspAI GCGC 2 cut(s) 240, 271
Kpn2I TCCGGA 1 cut(s) 607
LmnI GCTCC 3 cut(s) 237, 931, 1580
Lsp1109I GCAGC 2 cut(s) 1168, 1231
LweI GCATC 6 cut(s) 27, 166, 282, 655, 1005, 1326
MabI ACCWGGT 1 cut(s) 544
MaeI CTAG 5 cut(s) 266, 656, 677, 996, 1269
MaeIII GTNAC 4 cut(s) 553, 887, 1085, 1442
MboII GAAGA 8 cut(s) 302, 313, 446, 851, 995, 1425, 1520, 1820
MflI RGATCY 2 cut(s) 373, 509
MhlI GDGCHC 2 cut(s) 259, 1134
MlsI TGGCCA 2 cut(s) 1452, 1734
MluNI TGGCCA 2 cut(s) 1452, 1734
MlyI GAGTC 1 cut(s) 1258
MmeI TCCRAC 1 cut(s) 913
Mox20I TGGCCA 2 cut(s) 1452, 1734
Mph1103I ATGCAT 2 cut(s) 1126, 1237
MroI TCCGGA 1 cut(s) 607
MscI TGGCCA 2 cut(s) 1452, 1734
MseI TTAA 4 cut(s) 9, 162, 180, 497
MslI CAYNNNNRTG 1 cut(s) 348
Msp20I TGGCCA 2 cut(s) 1452, 1734
MspA1I CMGCKG 1 cut(s) 872
MspI CCGG 3 cut(s) 362, 474, 608
MspR9I CCNGG 2 cut(s) 546, 893
Mva1269I GAATGC 1 cut(s) 961
MvaI CCWGG 2 cut(s) 546, 893
MwoI GCNNNNNNNGC 3 cut(s) 1116, 1165, 1572
NdeI CATATG 1 cut(s) 250
NlaIV GGNNCC 3 cut(s) 622, 927, 1674
NmuCI GTSAC 1 cut(s) 1085
NsiI ATGCAT 2 cut(s) 1126, 1237
NspI RCATGY 1 cut(s) 1661
PagI TCATGA 2 cut(s) 502, 694
PctI GAATGC 1 cut(s) 961
PfeI GAWTC 4 cut(s) 452, 458, 488, 901
PflMI CCANNNNNTGG 1 cut(s) 47
PkrI GCNGC 3 cut(s) 653, 1158, 1221
PleI GAGTC 1 cut(s) 1257
PpsI GAGTC 1 cut(s) 1257
Psp124BI GAGCTC 1 cut(s) 1134
Psp6I CCWGG 2 cut(s) 544, 891
PspEI GGTNACC 1 cut(s) 887
PspFI CCCAGC 2 cut(s) 282, 1316
PspGI CCWGG 2 cut(s) 544, 891
PspN4I GGNNCC 3 cut(s) 622, 927, 1674
PspPI GGNCC 2 cut(s) 563, 1395
PsuI RGATCY 2 cut(s) 373, 509
PvuII CAGCTG 1 cut(s) 872
RsaI GTAC 3 cut(s) 543, 1178, 1762
RsaNI GTAC 3 cut(s) 542, 1177, 1761
RseI CAYNNNNRTG 1 cut(s) 348
SacI GAGCTC 1 cut(s) 1134
SalI GTCGAC 1 cut(s) 1206
SaqAI TTAA 4 cut(s) 9, 162, 180, 497
SatI GCNGC 3 cut(s) 652, 1157, 1220
Sau96I GGNCC 2 cut(s) 563, 1395
SchI GAGTC 1 cut(s) 1258
ScrFI CCNGG 2 cut(s) 546, 893
SduI GDGCHC 2 cut(s) 259, 1134
SexAI ACCWGGT 1 cut(s) 544
SfaNI GCATC 6 cut(s) 27, 166, 282, 655, 1005, 1326
SinI GGWCC 1 cut(s) 563
SmiMI CAYNNNNRTG 1 cut(s) 348
SsiI CCGC 2 cut(s) 27, 652
SspI AATATT 1 cut(s) 535
SspMI CTAG 5 cut(s) 266, 656, 677, 996, 1269
SstI GAGCTC 1 cut(s) 1134
StyD4I CCNGG 2 cut(s) 544, 891
StyI CCWWGG 1 cut(s) 196
TaaI ACNGT 4 cut(s) 1176, 1212, 1796, 1824
TaqI TCGA 4 cut(s) 259, 1207, 1582, 1630
TauI GCSGC 1 cut(s) 654
TfiI GAWTC 4 cut(s) 452, 458, 488, 901
Tru1I TTAA 4 cut(s) 9, 162, 180, 497
Tru9I TTAA 4 cut(s) 9, 162, 180, 497
TscAI CASTG 5 cut(s) 1075, 1434, 1606, 1687, 1732
TseFI GTSAC 1 cut(s) 1085
TseI GCWGC 2 cut(s) 1156, 1219
Tsp45I GTSAC 1 cut(s) 1085
TspDTI ATGAA 7 cut(s) 465, 683, 852, 966, 1104, 1601, 1821
TspGWI ACGGA 1 cut(s) 645
TspRI CASTG 5 cut(s) 1075, 1434, 1606, 1687, 1732
Van91I CCANNNNNTGG 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 563
XapI RAATTY 5 cut(s) 13, 77, 220, 1640, 1720
XceI RCATGY 1 cut(s) 1661
XmiI GTMKAC 1 cut(s) 1207
XspI CTAG 5 cut(s) 266, 656, 677, 996, 1269
Zsp2I ATGCAT 2 cut(s) 1126, 1237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.