Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0008549

Physical Location & Seq

Genomic Coordinates Forward (+)

8620592 .. 8626466

Gene Structure 5875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG109200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2619 bp

ATGGGCGATCTTAGGCCTTGGTCGCCTGAGCCAAACGGCGTCGTTTCGGAGGAGAGGCCGACCTCGTCTTCTTCGTCCGTGTTTTCAATTTCAACCAATCAGAGGGAGTACTGGCGGAGAGCGGAGGAGGCGACGCAGGGGGTTATAGCTCAGGTCCAGCCTACTCACGTCTCCGAGCGGAGAAGGAAAGCCGTCATTGATTACGTCCAGAGGCTCTTTGGAGGTTGTCTTGGTTGCGAGGTGTTCCCGTTTGGATCAGTACCTCTGAAGACGTATCTCCCGGATGGAGATATTGATCTGACTGCTTTTGGTGGTCTAAATATTGAGGAGTCACTGGCCAATGATGTCTGTGCTGTTCTTGAAAGGGAAGATCACAATATGACCGCTGAGTTTATGGTGAAGGATGTGCAGTTAATTCGGGCTGAGGTTAAGCTTGTAAAGTGCCTTGTGCAAAATATTGTGGTTGATATATCCTTCAATCAGTTAGGAGGGCTATGTACATTATGCTTTCTTGAGCAGGTTGATCGCCTCATTGGCAAAGATCATCTCTTTAAACGTAGTATCATACTGATCAAGGCTTGGTGCTATTACGAGAGTCGAATTCTTGGTGCCCATCACGGTTTGATATCTACATATGGTTTGGAGACCTTAGTTCTTTTTATCTTCCATCTATTCCATACATCTCTGAATGGTCCTCTAGCGGTCCTGTATAAATTCTTGGACTACTTCAGTAAATTTGATTGGGACAACTATTGTATCAGCTTGAATGGTCCAGTTCGCATATCCTCACTTCCTGAACTCTTGGCTGAGATGCCAGATAATGGTAGGGGTGATCTATTGCTCAGTAGCGAATTTCTCAGGAGTTGTGTGGATAGGTTCTCAGTTCCTTCAAGGGGATATGAGACAAATTATAGAACTTTCCAGCCAAAGCATCTTAATATAGTTGATCCACTTAAAGAAAATAACAACCTTGGCAGAAGTGTGAGTAAAGGAAACTTTTACCGAATAAGGAGCGCTTTCACATATGGTGCTCGAAAACTAGGGCACATCCTTTCCCAGCCAGAAGAGAACATTGATGATGAGATTAGAAAGTTCTTCTCAAACACATTGGACAGGCATGGAAGTGGACAGAGGCCGGATGTCCAAGATCCTATTCCATTATCCAGATATGATGGGTTTGGTTCTGCATTGGGTTCAGAGTTGCAAGAAGATAAAGCAGTTTATGAATCCGAATCTGCTTATTCAACCGGCTTGGTTGGGGATTCTGGGTTAAATCATGAGGGATCTTGGGATGGTGGAGATACAAATATTAATGTACCTGGTCAAGTCACAAATGGTCCACCCAAAAGTGATACAGAGTTGGTATCCCCAACAATGTTTCCGGAAATAGAGGGTTCCTCAAACGGAATTGCTGTTTCGGAGTGCCGCCTAGTTGGGGATGCAAAAGACCTAGCTACCTCCAGATTTCATGACCTTACAATTTCAAATGATGCTCAGAAACCATCCCCGTCCAAAGGTGAGATGAGTATGTCTCCTTTGGGTAAAACACAACTTGCACCTCATCTTTATTTCTCTCACTCATCAATGGGAAATGGGAACGTTAGTAATGGAGATGAAGATCACGAACTGCCAGAAAGCTTTGGATCAGCTGAGAATGGGGTTGGTAACCAGGATGAGAATCAATCAGCTTGTAATCAGGAGTCTTTGGCTCCTGTTGGACAAAAGCACCAACTTTCAGACTTGCATTCCATTGTGGGTTCATCTGAAGACTTTTATCCTAGTTATTCTGGTTATCGGATGCCAATTAGCACTACTGGAAGTCCTGAAACTTCTAACCCTTTGTCTGATCTCAGTGGGGAATATGATAGTCACTTACATAACCTACGTTATGGCCGTTCATGCTATGCATACGAGCTCAATGCAGTCCATCATCCCGTGCAGCCTCCAATGCCCTCACAGTACCAGAGAAGTAAGTCATGGGATGTAAGTCGACAGTCTGTGCAGCTCAGACAGAATGCATTTTCACCAATGAGTCCCAATGGTGTTGTCCCTAGACAAGCATTTTACCATATGAACCCACCAATTCTACCTAATGGTGCTGGGTTTGGTATGGAGGAGATGCCAAAACCACGAGGAACTGGAACATACTTTCCCAATACGAACCATTACAGAGATAGGCCCATGACAACAAGGGGAAGAAATCAAGCACCAGTGAGGTCTCCTCGTAACAATGGCCATGCCATGATACCACCTCCAGAAAATAATTTTCCTGACAGAAACAGTCGTGAGCTATCACAAGCCCAAATGCCTCTTCAAAAAGGTGGGGGAAAGTTTGGTTCTCCAGATAGCCCCACCAACTCCCCTCGAATGAAAGCATATCCCAATGCCAATGGGTCAATACATCCTTCTGATCGAATTGTAGAATTTGGGTCAGTTGAGCATGTGCCATTAGAGGCAGCTCCCAGTGGCAGGCAAACAAACTCGGGATCATCATCCAGTCAAAATTCCAGTGTTGGCCAAGCCTCAACAAACTCGGAATTGGGTACAGATCAAGATAGGATTTCTGTGCAGTCATACCGTTTGAAAGATGAAGATGATTTCCCACCGTTATCAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

872

Amino Acids

96.3

Weight (kDa)

5.53

Isoelectric Point (pI)

51.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTPAP-like_central	PF22600	46 - 165	4.3e-07	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
PAP-OAS1	PF26180	178 - 370	1.4e-99	PAP/OAS1 substrate-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51620 AT3G51620 AT3G51620
fragaria_vesca	FvH4_6g10110 FvH4_6g10110 FvH4_6g10110 FvH4_6g10110 FvH4_6g10110
malus_domestica	MD04G1172800.v1.1 MD12G1186100.v1.1
prunus_persica	Prupe.6G291600_v2.0.a1
pyrus_communis	pycom04g15270 pycom12g17470
rosa_chinensis	RchiOBHm_Chr3g0460811
rosa_laevigata	RLG00000024979
rosa_multiflora	Rmu_sc0007678.1_g000014
rosa_roxburghii	Rroxscaffold_6G00419200
rosa_rugosa	Rorug03G0046500
rosa_samantha	Rh3AG103600 Rh3BG107300 Rh3CG109200 Rh3DG109100
rosa_wichuraiana	Rw3G008820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	508
AccB1I	GGYRCC	1 cut(s)	608
AccB7I	CCANNNNNTGG	1 cut(s)	821
AccBSI	CCGCTC	2 cut(s)	122, 178
AccI	GTMKAC	1 cut(s)	1990
AccIII	TCCGGA	1 cut(s)	1381
AciI	CCGC	6 cut(s)	115, 122, 178, 384, 701, 1426
AclI	AACGTT	1 cut(s)	1599
AclWI	GGATC	6 cut(s)	262, 941, 1142, 1291, 1651, 2494
AcoI	YGGCCR	4 cut(s)	336, 1891, 2233, 2515
AcsI	RAATTY	6 cut(s)	600, 713, 734, 851, 2423, 2503
AcuI	CTGAAG	3 cut(s)	287, 712, 1785
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	6 cut(s)	110, 261, 499, 1317, 1961, 2545
AfeI	AGCGCT	1 cut(s)	1015
AfiI	CCNNNNNNNGG	6 cut(s)	102, 821, 893, 1435, 1514, 2469
AjiI	CACGTC	1 cut(s)	169
AjnI	CCWGG	2 cut(s)	1318, 1668
AjuI	GAANNNNNNNTTGG	4 cut(s)	1137, 1169, 2295, 2327
AloI	GAACNNNNNNTCC	2 cut(s)	2134, 2166
Alw21I	GWGCWC	2 cut(s)	1033, 1917
Alw26I	GTCTC	5 cut(s)	175, 638, 896, 1536, 2223
AlwI	GGATC	6 cut(s)	262, 941, 1142, 1291, 1651, 2494
Ama87I	CYCGRG	1 cut(s)	2482
Aor13HI	TCCGGA	1 cut(s)	1381
Aor51HI	AGCGCT	1 cut(s)	1015
AoxI	GGCC	8 cut(s)	14, 56, 336, 1133, 1891, 2177, 2233, 2515
ApeKI	GCWGC	3 cut(s)	1939, 2002, 2456
ApoI	RAATTY	6 cut(s)	600, 713, 734, 851, 2423, 2503
AseI	ATTAAT	1 cut(s)	1311
AspLEI	GCGC	1 cut(s)	1016
AspS9I	GGNCC	6 cut(s)	154, 692, 703, 770, 1337, 2178
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	4 cut(s)	409, 842, 1529, 2016
AvaI	CYCGRG	1 cut(s)	2482
AvaII	GGWCC	5 cut(s)	154, 692, 703, 770, 1337
BaeGI	GKGCMC	2 cut(s)	613, 1047
BaeI	ACNNNNGTAYC	2 cut(s)	739, 772
BalI	TGGCCA	3 cut(s)	338, 2235, 2517
BanI	GGYRCC	1 cut(s)	608
BanII	GRGCYC	1 cut(s)	1917
BauI	CACGAG	1 cut(s)	2130
BbsI	GAAGAC	3 cut(s)	60, 275, 1773
Bbv12I	GWGCWC	2 cut(s)	1033, 1917
BbvCI	CCTCAGC	1 cut(s)	423
BbvI	GCAGC	3 cut(s)	1951, 2014, 2468
BccI	CCATC	7 cut(s)	278, 621, 675, 1166, 1286, 1510, 1935
BceAI	ACGGC	3 cut(s)	52, 176, 1878
BcgI	CGANNNNNNTGC	6 cut(s)	398, 432, 506, 540, 1901, 1935
BciT130I	CCWGG	2 cut(s)	1320, 1670
BciVI	GTATCC	1 cut(s)	1375
BclI	TGATCA	1 cut(s)	570
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	5 cut(s)	175, 638, 896, 1536, 2223
BfaI	CTAG	6 cut(s)	698, 1040, 1430, 1451, 1779, 2052
BfoI	RGCGCY	1 cut(s)	1017
BfuAI	ACCTGC	1 cut(s)	508
BfuI	GTATCC	1 cut(s)	1375
BglI	GCCNNNNNGGC	1 cut(s)	534
BisI	GCNGC	4 cut(s)	1426, 1940, 2003, 2457
BlsI	GCNGC	4 cut(s)	1427, 1941, 2004, 2458
BmcAI	AGTACT	1 cut(s)	110
Bme1390I	CCNGG	3 cut(s)	281, 1320, 1670
Bme18I	GGWCC	5 cut(s)	154, 692, 703, 770, 1337
BmeT110I	CYCGRG	1 cut(s)	2482
BmgBI	CACGTC	1 cut(s)	169
BmgT120I	GGNCC	6 cut(s)	154, 692, 703, 770, 1337, 2178
BmiI	GGNNCC	3 cut(s)	610, 1396, 1710
BmrFI	CCNGG	3 cut(s)	281, 1320, 1670
BmrI	ACTGGG	1 cut(s)	2457
BmsI	GCATC	6 cut(s)	801, 940, 1429, 1480, 1788, 2109
BmuI	ACTGGG	1 cut(s)	2457
BpiI	GAAGAC	3 cut(s)	60, 275, 1773
BplI	GAGNNNNNCTC	6 cut(s)	1382, 1414, 1516, 1548, 2206, 2238
BpmI	CTGGAG	3 cut(s)	1444, 2238, 2325
Bpu10I	CCTNAGC	3 cut(s)	27, 150, 423
BpuEI	CTTGAG	1 cut(s)	533
BpuMI	CCSGG	1 cut(s)	281
BsaBI	GATNNNNATC	4 cut(s)	294, 1617, 1677, 2491
BsaHI	GRCGYC	1 cut(s)	39
BsaI	GGTCTC	2 cut(s)	638, 2223
BsaJI	CCNNGG	2 cut(s)	17, 970
BsaWI	WCCGGW	1 cut(s)	1381
Bsc4I	CCNNNNNNNGG	6 cut(s)	102, 821, 893, 1435, 1514, 2469
Bse118I	RCCGGY	1 cut(s)	1247
Bse1I	ACTGG	9 cut(s)	116, 339, 773, 1819, 2143, 2210, 2463, 2496, 2508
Bse8I	GATNNNNATC	4 cut(s)	294, 1617, 1677, 2491
BseAI	TCCGGA	1 cut(s)	1381
BseBI	CCWGG	2 cut(s)	1320, 1670
BseDI	CCNNGG	2 cut(s)	17, 970
BseJI	GATNNNNATC	4 cut(s)	294, 1617, 1677, 2491
BseLI	CCNNNNNNNGG	6 cut(s)	102, 821, 893, 1435, 1514, 2469
BseNI	ACTGG	9 cut(s)	116, 339, 773, 1819, 2143, 2210, 2463, 2496, 2508
BseRI	GAGGAG	5 cut(s)	65, 140, 341, 2129, 2211
BseSI	GKGCMC	2 cut(s)	613, 1047
BseXI	GCAGC	3 cut(s)	1951, 2014, 2468
BseYI	CCCAGC	2 cut(s)	1056, 2099
BsgI	GTGCAG	4 cut(s)	428, 1958, 2021, 2588
BshFI	GGCC	8 cut(s)	16, 58, 338, 1135, 1893, 2179, 2235, 2517
BshNI	GGYRCC	1 cut(s)	608
BsiHKAI	GWGCWC	2 cut(s)	1033, 1917
BsiHKCI	CYCGRG	1 cut(s)	2482
BsiSI	CCGG	4 cut(s)	281, 1136, 1248, 1382
BslFI	GGGAC	3 cut(s)	758, 2019, 2033
BslI	CCNNNNNNNGG	6 cut(s)	102, 821, 893, 1435, 1514, 2469
BsmAI	GTCTC	5 cut(s)	175, 638, 896, 1536, 2223
BsmBI	CGTCTC	1 cut(s)	175
BsmFI	GGGAC	3 cut(s)	758, 2019, 2033
BsmI	GAATGC	2 cut(s)	1744, 2020
BsnI	GGCC	8 cut(s)	16, 58, 338, 1135, 1893, 2179, 2235, 2517
Bso31I	GGTCTC	2 cut(s)	638, 2223
BsoBI	CYCGRG	1 cut(s)	2482
Bsp1286I	GDGCHC	4 cut(s)	613, 1033, 1047, 1917
Bsp13I	TCCGGA	1 cut(s)	1381
Bsp1407I	TGTACA	1 cut(s)	497
BspACI	CCGC	6 cut(s)	115, 122, 178, 384, 701, 1426
BspANI	GGCC	8 cut(s)	16, 58, 338, 1135, 1893, 2179, 2235, 2517
BspEI	TCCGGA	1 cut(s)	1381
BspHI	TCATGA	2 cut(s)	1276, 1468
BspLI	GGNNCC	3 cut(s)	610, 1396, 1710
BspMI	ACCTGC	1 cut(s)	508
BspPI	GGATC	6 cut(s)	262, 941, 1142, 1291, 1651, 2494
BspT107I	GGYRCC	1 cut(s)	608
BspTNI	GGTCTC	2 cut(s)	638, 2223
BsrBI	CCGCTC	2 cut(s)	122, 178
BsrFI	RCCGGY	1 cut(s)	1247
BsrGI	TGTACA	1 cut(s)	497
BsrI	ACTGG	9 cut(s)	116, 339, 773, 1819, 2143, 2210, 2463, 2496, 2508
BssAI	RCCGGY	1 cut(s)	1247
BssECI	CCNNGG	2 cut(s)	17, 970
BssNI	GRCGYC	1 cut(s)	39
BssSI	CACGAG	1 cut(s)	2130
BssT1I	CCWWGG	2 cut(s)	17, 970
Bst2BI	CACGAG	1 cut(s)	2130
Bst2UI	CCWGG	2 cut(s)	1320, 1670
Bst4CI	ACNGT	6 cut(s)	620, 1959, 1995, 2282, 2579, 2607
Bst6I	CTCTTC	2 cut(s)	1059, 2316
BstACI	GRCGYC	1 cut(s)	39
BstAUI	TGTACA	1 cut(s)	497
BstC8I	GCNNGC	1 cut(s)	2471
BstEII	GGTNACC	1 cut(s)	1664
BstH2I	RGCGCY	1 cut(s)	1017
BstHHI	GCGC	1 cut(s)	1016
BstMAI	GTCTC	5 cut(s)	175, 638, 896, 1536, 2223
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 128, 534, 1899, 1948
BstNI	CCWGG	2 cut(s)	1320, 1670
BstNSI	RCATGY	1 cut(s)	2444
BstPI	GGTNACC	1 cut(s)	1664
BstSCI	CCNGG	3 cut(s)	279, 1318, 1668
BstSLI	GKGCMC	2 cut(s)	613, 1047
BstV1I	GCAGC	3 cut(s)	1951, 2014, 2468
BstV2I	GAAGAC	3 cut(s)	60, 275, 1773
BstX2I	RGATCY	2 cut(s)	1147, 1283
BstYI	RGATCY	2 cut(s)	1147, 1283
BsuI	GTATCC	1 cut(s)	1375
BsuRI	GGCC	8 cut(s)	16, 58, 338, 1135, 1893, 2179, 2235, 2517
BtrI	CACGTC	1 cut(s)	169
BtsIMutI	CAGTG	5 cut(s)	332, 1858, 2217, 2470, 2515
BveI	ACCTGC	1 cut(s)	508
Cac8I	GCNNGC	1 cut(s)	2471
CciI	TCATGA	2 cut(s)	1276, 1468
CfoI	GCGC	1 cut(s)	1016
Cfr10I	RCCGGY	1 cut(s)	1247
Cfr13I	GGNCC	6 cut(s)	154, 692, 703, 770, 1337, 2178
CseI	GACGC	2 cut(s)	28, 142
CsiI	ACCWGGT	1 cut(s)	1318
Csp6I	GTAC	6 cut(s)	109, 260, 498, 1316, 1960, 2544
CviAII	CATG	9 cut(s)	1118, 1277, 1469, 1899, 1977, 2182, 2237, 2242, 2441
CviQI	GTAC	6 cut(s)	109, 260, 498, 1316, 1960, 2544
DraI	TTTAAA	1 cut(s)	553
EaeI	YGGCCR	4 cut(s)	336, 1891, 2233, 2515
Eam1104I	CTCTTC	2 cut(s)	1059, 2316
EarI	CTCTTC	2 cut(s)	1059, 2316
EciI	GGCGGA	1 cut(s)	130
Ecl136II	GAGCTC	1 cut(s)	1915
Eco130I	CCWWGG	2 cut(s)	17, 970
Eco147I	AGGCCT	1 cut(s)	16
Eco24I	GRGCYC	1 cut(s)	1917
Eco31I	GGTCTC	2 cut(s)	638, 2223
Eco32I	GATATC	1 cut(s)	627
Eco47I	GGWCC	5 cut(s)	154, 692, 703, 770, 1337
Eco47III	AGCGCT	1 cut(s)	1015
Eco53kI	GAGCTC	1 cut(s)	1915
Eco57I	CTGAAG	3 cut(s)	287, 712, 1785
Eco88I	CYCGRG	1 cut(s)	2482
Eco91I	GGTNACC	1 cut(s)	1664
EcoICRI	GAGCTC	1 cut(s)	1915
EcoO65I	GGTNACC	1 cut(s)	1664
EcoRI	GAATTC	1 cut(s)	600
EcoRII	CCWGG	2 cut(s)	1318, 1668
EcoRV	GATATC	1 cut(s)	627
EcoT14I	CCWWGG	2 cut(s)	17, 970
EcoT22I	ATGCAT	2 cut(s)	1909, 2020
EcoT38I	GRGCYC	1 cut(s)	1917
ErhI	CCWWGG	2 cut(s)	17, 970
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	9 cut(s)	1121, 1280, 1472, 1902, 1980, 2185, 2240, 2245, 2444
FalI	AAGNNNNNCTT	2 cut(s)	1000, 1032
FaqI	GGGAC	3 cut(s)	758, 2019, 2033
FatI	CATG	9 cut(s)	1117, 1276, 1468, 1898, 1976, 2181, 2236, 2241, 2440
FauNDI	CATATG	3 cut(s)	634, 1024, 2070
FbaI	TGATCA	1 cut(s)	570
FblI	GTMKAC	1 cut(s)	1990
Fnu4HI	GCNGC	4 cut(s)	1426, 1940, 2003, 2457
FriOI	GRGCYC	1 cut(s)	1917
Fsp4HI	GCNGC	4 cut(s)	1426, 1940, 2003, 2457
FspBI	CTAG	6 cut(s)	698, 1040, 1430, 1451, 1779, 2052
GlaI	GCGC	1 cut(s)	1015
GluI	GCNGC	4 cut(s)	1426, 1940, 2003, 2457
GsaI	CCCAGC	2 cut(s)	1060, 2103
GsuI	CTGGAG	3 cut(s)	1444, 2238, 2325
HaeII	RGCGCY	1 cut(s)	1017
HaeIII	GGCC	8 cut(s)	16, 58, 338, 1135, 1893, 2179, 2235, 2517
HapII	CCGG	4 cut(s)	281, 1136, 1248, 1382
HgaI	GACGC	2 cut(s)	28, 142
HhaI	GCGC	1 cut(s)	1016
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	9 cut(s)	1121, 1280, 1472, 1902, 1980, 2185, 2240, 2245, 2444
Hin6I	GCGC	1 cut(s)	1014
HinP1I	GCGC	1 cut(s)	1014
HincII	GTYRAC	1 cut(s)	1991
HindII	GTYRAC	1 cut(s)	1991
HindIII	AAGCTT	2 cut(s)	431, 1636
HinfI	GANTC	8 cut(s)	329, 595, 1226, 1232, 1262, 1678, 1700, 2032
HpaII	CCGG	4 cut(s)	281, 1136, 1248, 1382
HphI	GGTGA	4 cut(s)	409, 842, 1529, 2016
Hpy166II	GTNNAC	3 cut(s)	1127, 1340, 1991
Hpy8I	GTNNAC	3 cut(s)	1127, 1340, 1991
Hpy99I	CGWCG	2 cut(s)	44, 136
HpyAV	CCTTC	5 cut(s)	177, 394, 484, 897, 2415
HpyCH4III	ACNGT	6 cut(s)	620, 1959, 1995, 2282, 2579, 2607
HpyCH4IV	ACGT	6 cut(s)	168, 204, 272, 556, 1599, 1885
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 128, 534, 1899, 1948
HpySE526I	ACGT	6 cut(s)	168, 204, 272, 556, 1599, 1885
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	9 cut(s)	1121, 1280, 1472, 1902, 1980, 2185, 2240, 2245, 2444
HspAI	GCGC	1 cut(s)	1014
Kpn2I	TCCGGA	1 cut(s)	1381
Ksp22I	TGATCA	1 cut(s)	570
LmnI	GCTCC	3 cut(s)	1011, 1714, 2464
Lsp1109I	GCAGC	3 cut(s)	1951, 2014, 2468
LweI	GCATC	6 cut(s)	801, 940, 1429, 1480, 1788, 2109
MabI	ACCWGGT	1 cut(s)	1318
MaeI	CTAG	6 cut(s)	698, 1040, 1430, 1451, 1779, 2052
MaeII	ACGT	6 cut(s)	168, 204, 272, 556, 1599, 1885
MaeIII	GTNAC	5 cut(s)	330, 1327, 1664, 1868, 2225
MbiI	CCGCTC	2 cut(s)	122, 178
MflI	RGATCY	2 cut(s)	1147, 1283
MhlI	GDGCHC	4 cut(s)	613, 1033, 1047, 1917
MlsI	TGGCCA	3 cut(s)	338, 2235, 2517
MluNI	TGGCCA	3 cut(s)	338, 2235, 2517
MlyI	GAGTC	4 cut(s)	338, 604, 1709, 2041
MmeI	TCCRAC	1 cut(s)	1696
Mox20I	TGGCCA	3 cut(s)	338, 2235, 2517
Mph1103I	ATGCAT	2 cut(s)	1909, 2020
MroI	TCCGGA	1 cut(s)	1381
MscI	TGGCCA	3 cut(s)	338, 2235, 2517
MseI	TTAA	7 cut(s)	413, 429, 552, 936, 954, 1271, 1311
MslI	CAYNNNNRTG	1 cut(s)	1122
Msp20I	TGGCCA	3 cut(s)	338, 2235, 2517
MspA1I	CMGCKG	2 cut(s)	386, 1649
MspI	CCGG	4 cut(s)	281, 1136, 1248, 1382
MspR9I	CCNGG	3 cut(s)	281, 1320, 1670
Mva1269I	GAATGC	2 cut(s)	1744, 2020
MvaI	CCWGG	2 cut(s)	1320, 1670
MwoI	GCNNNNNNNGC	5 cut(s)	22, 128, 534, 1899, 1948
NciI	CCSGG	1 cut(s)	281
NdeI	CATATG	3 cut(s)	634, 1024, 2070
NlaIII	CATG	9 cut(s)	1121, 1280, 1472, 1902, 1980, 2185, 2240, 2245, 2444
NlaIV	GGNNCC	3 cut(s)	610, 1396, 1710
NmuCI	GTSAC	3 cut(s)	330, 1327, 1868
NsiI	ATGCAT	2 cut(s)	1909, 2020
NspI	RCATGY	1 cut(s)	2444
PagI	TCATGA	2 cut(s)	1276, 1468
PceI	AGGCCT	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	2 cut(s)	71, 1891
PctI	GAATGC	2 cut(s)	1744, 2020
PfeI	GAWTC	4 cut(s)	1226, 1232, 1262, 1678
PflFI	GACNNNGTC	1 cut(s)	64
PflMI	CCANNNNNTGG	1 cut(s)	821
PfoI	TCCNGGA	1 cut(s)	279
PkrI	GCNGC	4 cut(s)	1427, 1941, 2004, 2458
PleI	GAGTC	4 cut(s)	337, 603, 1708, 2040
PpsI	GAGTC	4 cut(s)	337, 603, 1708, 2040
PshBI	ATTAAT	1 cut(s)	1311
Psp124BI	GAGCTC	1 cut(s)	1917
Psp1406I	AACGTT	1 cut(s)	1599
Psp6I	CCWGG	2 cut(s)	1318, 1668
PspEI	GGTNACC	1 cut(s)	1664
PspFI	CCCAGC	2 cut(s)	1056, 2099
PspGI	CCWGG	2 cut(s)	1318, 1668
PspN4I	GGNNCC	3 cut(s)	610, 1396, 1710
PspPI	GGNCC	6 cut(s)	154, 692, 703, 770, 1337, 2178
PsuI	RGATCY	2 cut(s)	1147, 1283
PsyI	GACNNNGTC	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	1649
RsaI	GTAC	6 cut(s)	110, 261, 499, 1317, 1961, 2545
RsaNI	GTAC	6 cut(s)	109, 260, 498, 1316, 1960, 2544
RseI	CAYNNNNRTG	1 cut(s)	1122
SacI	GAGCTC	1 cut(s)	1917
SalI	GTCGAC	1 cut(s)	1989
SaqAI	TTAA	7 cut(s)	413, 429, 552, 936, 954, 1271, 1311
SatI	GCNGC	4 cut(s)	1426, 1940, 2003, 2457
Sau96I	GGNCC	6 cut(s)	154, 692, 703, 770, 1337, 2178
ScaI	AGTACT	1 cut(s)	110
SchI	GAGTC	4 cut(s)	338, 604, 1709, 2041
ScrFI	CCNGG	3 cut(s)	281, 1320, 1670
SduI	GDGCHC	4 cut(s)	613, 1033, 1047, 1917
SexAI	ACCWGGT	1 cut(s)	1318
SfaNI	GCATC	6 cut(s)	801, 940, 1429, 1480, 1788, 2109
SinI	GGWCC	5 cut(s)	154, 692, 703, 770, 1337
SmiMI	CAYNNNNRTG	1 cut(s)	1122
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
SseBI	AGGCCT	1 cut(s)	16
SsiI	CCGC	6 cut(s)	115, 122, 178, 384, 701, 1426
SspI	AATATT	3 cut(s)	322, 457, 1309
SspMI	CTAG	6 cut(s)	698, 1040, 1430, 1451, 1779, 2052
SstI	GAGCTC	1 cut(s)	1917
StuI	AGGCCT	1 cut(s)	16
StyD4I	CCNGG	3 cut(s)	279, 1318, 1668
StyI	CCWWGG	2 cut(s)	17, 970
TaaI	ACNGT	6 cut(s)	620, 1959, 1995, 2282, 2579, 2607
TaiI	ACGT	6 cut(s)	171, 207, 275, 559, 1602, 1888
TaqI	TCGA	5 cut(s)	598, 1033, 1990, 2365, 2413
TatI	WGTACW	2 cut(s)	108, 497
TauI	GCSGC	1 cut(s)	1428
TfiI	GAWTC	4 cut(s)	1226, 1232, 1262, 1678
Tru1I	TTAA	7 cut(s)	413, 429, 552, 936, 954, 1271, 1311
Tru9I	TTAA	7 cut(s)	413, 429, 552, 936, 954, 1271, 1311
TscAI	CASTG	5 cut(s)	339, 1858, 2217, 2470, 2515
TseFI	GTSAC	3 cut(s)	330, 1327, 1868
TseI	GCWGC	3 cut(s)	1939, 2002, 2456
Tsp45I	GTSAC	3 cut(s)	330, 1327, 1868
TspDTI	ATGAA	8 cut(s)	1239, 1457, 1629, 1749, 1887, 2087, 2384, 2604
TspGWI	ACGGA	2 cut(s)	67, 1419
TspRI	CASTG	5 cut(s)	339, 1858, 2217, 2470, 2515
Tth111I	GACNNNGTC	1 cut(s)	64
Van91I	CCANNNNNTGG	1 cut(s)	821
VpaK11BI	GGWCC	5 cut(s)	154, 692, 703, 770, 1337
VspI	ATTAAT	1 cut(s)	1311
XapI	RAATTY	6 cut(s)	600, 713, 734, 851, 2423, 2503
XceI	RCATGY	1 cut(s)	2444
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	1990
XspI	CTAG	6 cut(s)	698, 1040, 1430, 1451, 1779, 2052
ZrmI	AGTACT	1 cut(s)	110
Zsp2I	ATGCAT	2 cut(s)	1909, 2020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.