Rroxscaffold_6G00419200

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0008549
Physical Location & Seq
Reverse (-)
40719225 .. 40725122
5898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00419200.1

Sequence Viewer

Length: 2673 bp
ATGGGCGATCTTAGGCCTTGGTCGCCTGAGCCAAACGGCGCCGTTTTGGAGGAGATTCCGACCTCGTCTTCTTCGTCCGTGTTTTCAATTTCAACCAATCAGAGGGGCGTTTCCGCCGAGTACTGGCGGAGAGCGGAGGAGGCGACGCAGGGGGTTATAGCTCAGGTCCAGCCTACTCACGTCTCCGAACGGAGAAGGAAAGCCGTCATTGATTACGTCCAGAGGCTCATTGGAGGTTGTATTGGTTGCAAGGTGTTCCCGTTTGGATCAGTACCTCTCAAGACGTATCTGCCGGATGGAGATATTGATCTGACTGCTTTTGGTGGTCTAAATATTGAGGAGTCACTGGCCAATGATGTCTGTGCTGTTCTTGAAAGGGAAGATCACAATATGGCTGCTGAGTTTATGGTGAAGGATGTGCAGTTAATTCGGGCTGAGATTTACTTAATTTTAGTTGTCCTCAGTAAAGAAGATTGTGTTTTCTGGTGGCAGGTTAAGCTTGTGAAGTGCCTTGTGCAAAATATTGTGGTTGATATATCCTTCAATCAGTTAGGAGGGCTATGTACGTTATGCTTTCTTGAGCAGGTTGATCGCCTCATTGGCAAAGATCATCTCTTTAAACGTAGTATCATACTGATTAAGGCTTGGTGCTATTATGAGAGTCGAATTCTTGGTGCCCATCACGGTTTGATATCTACATATGGTTTGGAGACCTTAGTTCTTTTTATCTTCCATCTATTCCATACATCTCTGAATGGTCCTCTAGCGGTCTTGTATAAATTCTTGGACTACTTCAGTAAATTTGATTGGGACAACTATTGTATCAGCTTGAATGGTCCAGTTCTCATATCCTCACTTCCTGAACTCTTGGCTGAGATGCCAGATCATGGTGGGGGTGATCTATTGCTCAGTAGCGAATTTCTCAGGAGTTGTGTGGATAGGTTCTCAGTTCCTTCAAGGGGATATGAGACAAATTATAGAACTTTCCAGCCAAAGCATCTTAATATAGTTGATCCACTTAAAGAAAATAACAACCTTGGCAGAAGTGTGAGTAAAGGAAACTTTTACCGAATAAGGAGTGCTTTCACATATGGTGCTCGAAAACTAGGGCGCATCCTTTCCCAGCCAGAGGAGAACATTGATGGTGAGATTAGAAAGTTCTTCTCAAACACATTGGACAGGCATGGAAGTGGACAGAGGCCGGATGTCCATGATCCTACTCCATTATCCAGATATGATGGGTTTGGTTCTGAGTTGCAAGAAGATAAAGCAGTTTTTGAATCCGAATCTGCTTATTCAACTGGCTTGGTTCTGGATTCTGGATTAAATCATGAGGGATCTTGGGATGGTGGAGATACAAATATTAATGTACCTGGTCAAGTTACAAATGGTCCACCCAAAAGTGATACAGAGTTAGTATCCCCAACAATGTTTCCGGAAATAGAGGGTTCCTCAAACGGAATTGCTGTTTCGGAGTGCCGCCTAGTTGGGGATGCAAAAGACTTAGCTACCTCCAGATTTCATGACCTTACAATTTCAAATGATGCTCAGAAGCCATCGCCGTCCAAAGGTGAGATGAGTATGTCTCCTTTGGGTAAAAGACAACTTGCACATCATCGTTATTTCTCTCACTCATCAATGGGAAATGGGAACGTTAGTAATGGAGATGAAGATCACAAACTGCCAGAAAGCTTTGGATCAGCTGAGAATGGGATTGGTAACCAGGATGAGAATCAATCAGCTTGTAATCAGGAGTCTTTGGCTCCTGTTGGACAAAAGCACCAACTTTCACGCTTGCATTCCATTGTGGGTTCATCTGAAGACTTTTATCCTAGTTATTCTGGTTATCGGATGCCAATTAGCACTACTGGAAGTCCTGAAACTTCTAACCCTTTGTCTGATCTCAGTGGGGAATATGATAGTCACTTACATAACCTACGTTATGGCCGTTCATGCTATGCATACGAGCTCAATGCAGTCCATCATCCCGTGCAGCCTCCAATGCCCTCACAGTACCAGAGAAGTAAGTCCTGGGATGTAAATCGACAGTCTGTGCAGCTCAGACAGAATGCATTTTCACCAATGAGTCCCAATGGTGTTGTCCCTAGACAAGCATTTTACCATATGAACCCACCAATGCTGCCTAATGGTGCTGGGTTTGGTATGGAGGAGATGCCAAAACCACGAGGAACTGGAACATACTTTCCCAATACGAACCATTACAGAGATAGGCCCATGACAACAAGGGGAAGAAATCAAGCACCAGTGAGGTCTCCTCGTAACAATGGCCATGCCATGATACCACCTCCAGAAAATAATTTTCCTGACAGAAACAGTCGTGAGCTATCACAAGCCCAAATGCCTCCTCAAAAAGGTGGGGGAAAGTTTGGTTCTCCAGATAGCCCCACCAGCTCCCCTCGAATGAAAGCATATCTCAATGCCAATGGGTCAATACATCCTTCTGATCAAATTGTAGAATTTGGGTCAGTTGAGCATGTGCCATTAGAGGCACCTCCCAGTGGCAGACAAACAAACTCGGGATCATCATCCAGTCAAAATTCTAGTGTTGGCCAAGCCTCAACAAACTTGGAATTGGGTACAGATCAAGATAGGATTTCTGTGCAGTCATACCGTTTGAAAGATGAAGATGATTTCCCACCGTTATCAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

890

Amino Acids

98.52

Weight (kDa)

5.8

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP-OAS1 PF26180 200 - 392 1e-98 PAP/OAS1 substrate-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 481, 574
AccB1I GGYRCC 3 cut(s) 38, 674, 2509
AccB7I CCANNNNNTGG 1 cut(s) 887
AccBSI CCGCTC 1 cut(s) 134
AccIII TCCGGA 1 cut(s) 1435
AciI CCGC 5 cut(s) 114, 127, 134, 767, 1480
AclI AACGTT 1 cut(s) 1653
AclWI GGATC 6 cut(s) 274, 1007, 1208, 1345, 1705, 2548
AcoI YGGCCR 4 cut(s) 348, 1945, 2287, 2569
AcsI RAATTY 6 cut(s) 666, 779, 800, 917, 2477, 2557
AcuI CTGAAG 2 cut(s) 778, 1839
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 6 cut(s) 122, 273, 565, 1371, 2015, 2599
AfiI CCNNNNNNNGG 9 cut(s) 102, 123, 887, 959, 1129, 1489, 1568, 2372, 2519
AjiI CACGTC 1 cut(s) 181
AjnI CCWGG 3 cut(s) 1372, 1722, 2030
AloI GAACNNNNNNTCC 2 cut(s) 2188, 2220
Alw21I GWGCWC 2 cut(s) 1099, 1971
Alw26I GTCTC 5 cut(s) 187, 704, 962, 1590, 2277
AlwI GGATC 6 cut(s) 274, 1007, 1208, 1345, 1705, 2548
Ama87I CYCGRG 1 cut(s) 2536
Aor13HI TCCGGA 1 cut(s) 1435
AoxI GGCC 7 cut(s) 14, 348, 1199, 1945, 2231, 2287, 2569
ApeKI GCWGC 4 cut(s) 395, 1993, 2056, 2140
ApoI RAATTY 6 cut(s) 666, 779, 800, 917, 2477, 2557
AseI ATTAAT 1 cut(s) 1365
AspLEI GCGC 2 cut(s) 41, 1113
AspS9I GGNCC 5 cut(s) 166, 758, 836, 1391, 2232
AsuHPI GGTGA 5 cut(s) 421, 908, 1157, 1583, 2070
AvaI CYCGRG 1 cut(s) 2536
AvaII GGWCC 4 cut(s) 166, 758, 836, 1391
BaeGI GKGCMC 1 cut(s) 679
BaeI ACNNNNGTAYC 2 cut(s) 805, 838
BalI TGGCCA 3 cut(s) 350, 2289, 2571
BanI GGYRCC 3 cut(s) 38, 674, 2509
BanII GRGCYC 1 cut(s) 1971
BauI CACGAG 1 cut(s) 2184
BbsI GAAGAC 2 cut(s) 60, 1827
Bbv12I GWGCWC 2 cut(s) 1099, 1971
BbvI GCAGC 4 cut(s) 382, 2005, 2068, 2127
BccI CCATC 8 cut(s) 290, 687, 741, 1136, 1232, 1340, 1564, 1989
BceAI ACGGC 5 cut(s) 26, 52, 188, 1546, 1932
BcgI CGANNNNNNTGC 6 cut(s) 410, 444, 572, 606, 1955, 1989
BciT130I CCWGG 3 cut(s) 1374, 1724, 2032
BciVI GTATCC 1 cut(s) 1429
BclI TGATCA 1 cut(s) 2464
BcoDI GTCTC 5 cut(s) 187, 704, 962, 1590, 2277
BfaI CTAG 6 cut(s) 764, 1106, 1484, 1833, 2106, 2562
BfoI RGCGCY 1 cut(s) 42
BfuAI ACCTGC 2 cut(s) 481, 574
BfuI GTATCC 1 cut(s) 1429
BglI GCCNNNNNGGC 1 cut(s) 600
BisI GCNGC 5 cut(s) 396, 1480, 1994, 2057, 2141
BlsI GCNGC 5 cut(s) 397, 1481, 1995, 2058, 2142
BmcAI AGTACT 1 cut(s) 122
Bme1390I CCNGG 3 cut(s) 1374, 1724, 2032
Bme18I GGWCC 4 cut(s) 166, 758, 836, 1391
BmeT110I CYCGRG 1 cut(s) 2536
BmgBI CACGTC 1 cut(s) 181
BmgT120I GGNCC 5 cut(s) 166, 758, 836, 1391, 2232
BmiI GGNNCC 5 cut(s) 40, 676, 1450, 1764, 2511
BmrFI CCNGG 3 cut(s) 1374, 1724, 2032
BmrI ACTGGG 1 cut(s) 2511
BmsI GCATC 7 cut(s) 867, 1006, 1122, 1483, 1534, 1842, 2163
BmuI ACTGGG 1 cut(s) 2511
BpiI GAAGAC 2 cut(s) 60, 1827
BplI GAGNNNNNCTC 6 cut(s) 1436, 1468, 1570, 1602, 2260, 2292
BpmI CTGGAG 3 cut(s) 1498, 2292, 2379
Bpu10I CCTNAGC 2 cut(s) 27, 162
BpuEI CTTGAG 2 cut(s) 263, 599
BsaBI GATNNNNATC 5 cut(s) 306, 1671, 1731, 2040, 2545
BsaHI GRCGYC 1 cut(s) 39
BsaI GGTCTC 2 cut(s) 704, 2277
BsaJI CCNNGG 3 cut(s) 17, 1036, 2031
BsaWI WCCGGW 1 cut(s) 1435
Bsc4I CCNNNNNNNGG 9 cut(s) 102, 123, 887, 959, 1129, 1489, 1568, 2372, 2519
Bse1I ACTGG 9 cut(s) 128, 351, 839, 1306, 1873, 2197, 2264, 2517, 2550
Bse8I GATNNNNATC 5 cut(s) 306, 1671, 1731, 2040, 2545
BseAI TCCGGA 1 cut(s) 1435
BseBI CCWGG 3 cut(s) 1374, 1724, 2032
BseDI CCNNGG 3 cut(s) 17, 1036, 2031
BseJI GATNNNNATC 5 cut(s) 306, 1671, 1731, 2040, 2545
BseLI CCNNNNNNNGG 9 cut(s) 102, 123, 887, 959, 1129, 1489, 1568, 2372, 2519
BseNI ACTGG 9 cut(s) 128, 351, 839, 1306, 1873, 2197, 2264, 2517, 2550
BseRI GAGGAG 7 cut(s) 65, 152, 353, 1145, 2183, 2265, 2355
BseSI GKGCMC 1 cut(s) 679
BseXI GCAGC 4 cut(s) 382, 2005, 2068, 2127
BseYI CCCAGC 2 cut(s) 1122, 2153
BsgI GTGCAG 4 cut(s) 440, 2012, 2075, 2642
BshFI GGCC 7 cut(s) 16, 350, 1201, 1947, 2233, 2289, 2571
BshNI GGYRCC 3 cut(s) 38, 674, 2509
BsiHKAI GWGCWC 2 cut(s) 1099, 1971
BsiHKCI CYCGRG 1 cut(s) 2536
BsiSI CCGG 3 cut(s) 293, 1202, 1436
BslFI GGGAC 3 cut(s) 824, 2073, 2087
BslI CCNNNNNNNGG 9 cut(s) 102, 123, 887, 959, 1129, 1489, 1568, 2372, 2519
BsmAI GTCTC 5 cut(s) 187, 704, 962, 1590, 2277
BsmBI CGTCTC 1 cut(s) 187
BsmFI GGGAC 3 cut(s) 824, 2073, 2087
BsmI GAATGC 2 cut(s) 1798, 2074
BsnI GGCC 7 cut(s) 16, 350, 1201, 1947, 2233, 2289, 2571
Bso31I GGTCTC 2 cut(s) 704, 2277
BsoBI CYCGRG 1 cut(s) 2536
Bsp1286I GDGCHC 3 cut(s) 679, 1099, 1971
Bsp13I TCCGGA 1 cut(s) 1435
BspACI CCGC 5 cut(s) 114, 127, 134, 767, 1480
BspANI GGCC 7 cut(s) 16, 350, 1201, 1947, 2233, 2289, 2571
BspEI TCCGGA 1 cut(s) 1435
BspHI TCATGA 2 cut(s) 1330, 1522
BspLI GGNNCC 5 cut(s) 40, 676, 1450, 1764, 2511
BspMI ACCTGC 2 cut(s) 481, 574
BspPI GGATC 6 cut(s) 274, 1007, 1208, 1345, 1705, 2548
BspT107I GGYRCC 3 cut(s) 38, 674, 2509
BspTNI GGTCTC 2 cut(s) 704, 2277
BsrBI CCGCTC 1 cut(s) 134
BsrI ACTGG 9 cut(s) 128, 351, 839, 1306, 1873, 2197, 2264, 2517, 2550
BssECI CCNNGG 3 cut(s) 17, 1036, 2031
BssNI GRCGYC 1 cut(s) 39
BssSI CACGAG 1 cut(s) 2184
BssT1I CCWWGG 2 cut(s) 17, 1036
Bst2BI CACGAG 1 cut(s) 2184
Bst2UI CCWGG 3 cut(s) 1374, 1724, 2032
Bst4CI ACNGT 6 cut(s) 686, 2013, 2049, 2336, 2633, 2661
BstACI GRCGYC 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 1796
BstEII GGTNACC 1 cut(s) 1718
BstENI CCTNNNNNAGG 1 cut(s) 2370
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 2 cut(s) 41, 1113
BstMAI GTCTC 5 cut(s) 187, 704, 962, 1590, 2277
BstMWI GCNNNNNNNGC 7 cut(s) 22, 140, 496, 600, 1953, 2002, 2409
BstNI CCWGG 3 cut(s) 1374, 1724, 2032
BstNSI RCATGY 1 cut(s) 2498
BstPI GGTNACC 1 cut(s) 1718
BstSCI CCNGG 3 cut(s) 1372, 1722, 2030
BstSLI GKGCMC 1 cut(s) 679
BstV1I GCAGC 4 cut(s) 382, 2005, 2068, 2127
BstV2I GAAGAC 2 cut(s) 60, 1827
BstX2I RGATCY 1 cut(s) 1337
BstYI RGATCY 1 cut(s) 1337
BsuI GTATCC 1 cut(s) 1429
BsuRI GGCC 7 cut(s) 16, 350, 1201, 1947, 2233, 2289, 2571
BtgZI GCGATG 1 cut(s) 1542
BtrI CACGTC 1 cut(s) 181
BtsIMutI CAGTG 4 cut(s) 344, 1912, 2271, 2524
BveI ACCTGC 2 cut(s) 481, 574
Cac8I GCNNGC 1 cut(s) 1796
CciI TCATGA 2 cut(s) 1330, 1522
CfoI GCGC 2 cut(s) 41, 1113
Cfr13I GGNCC 5 cut(s) 166, 758, 836, 1391, 2232
CseI GACGC 1 cut(s) 154
CsiI ACCWGGT 1 cut(s) 1372
Csp6I GTAC 6 cut(s) 121, 272, 564, 1370, 2014, 2598
CviQI GTAC 6 cut(s) 121, 272, 564, 1370, 2014, 2598
DinI GGCGCC 1 cut(s) 40
DraI TTTAAA 1 cut(s) 619
EaeI YGGCCR 4 cut(s) 348, 1945, 2287, 2569
EciI GGCGGA 2 cut(s) 103, 142
Ecl136II GAGCTC 1 cut(s) 1969
Eco130I CCWWGG 2 cut(s) 17, 1036
Eco147I AGGCCT 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 1971
Eco31I GGTCTC 2 cut(s) 704, 2277
Eco32I GATATC 1 cut(s) 693
Eco47I GGWCC 4 cut(s) 166, 758, 836, 1391
Eco53kI GAGCTC 1 cut(s) 1969
Eco57I CTGAAG 2 cut(s) 778, 1839
Eco88I CYCGRG 1 cut(s) 2536
Eco91I GGTNACC 1 cut(s) 1718
EcoICRI GAGCTC 1 cut(s) 1969
EcoNI CCTNNNNNAGG 1 cut(s) 2370
EcoO65I GGTNACC 1 cut(s) 1718
EcoRI GAATTC 1 cut(s) 666
EcoRII CCWGG 3 cut(s) 1372, 1722, 2030
EcoRV GATATC 1 cut(s) 693
EcoT14I CCWWGG 2 cut(s) 17, 1036
EcoT22I ATGCAT 2 cut(s) 1963, 2074
EcoT38I GRGCYC 1 cut(s) 1971
EgeI GGCGCC 1 cut(s) 40
EheI GGCGCC 1 cut(s) 40
ErhI CCWWGG 2 cut(s) 17, 1036
Esp3I CGTCTC 1 cut(s) 187
FalI AAGNNNNNCTT 2 cut(s) 1066, 1098
FaqI GGGAC 3 cut(s) 824, 2073, 2087
FauNDI CATATG 3 cut(s) 700, 1090, 2124
FbaI TGATCA 1 cut(s) 2464
Fnu4HI GCNGC 5 cut(s) 396, 1480, 1994, 2057, 2141
FriOI GRGCYC 1 cut(s) 1971
Fsp4HI GCNGC 5 cut(s) 396, 1480, 1994, 2057, 2141
FspBI CTAG 6 cut(s) 764, 1106, 1484, 1833, 2106, 2562
GlaI GCGC 2 cut(s) 40, 1112
GluI GCNGC 5 cut(s) 396, 1480, 1994, 2057, 2141
GsaI CCCAGC 2 cut(s) 1126, 2157
GsuI CTGGAG 3 cut(s) 1498, 2292, 2379
HaeII RGCGCY 1 cut(s) 42
HaeIII GGCC 7 cut(s) 16, 350, 1201, 1947, 2233, 2289, 2571
HapII CCGG 3 cut(s) 293, 1202, 1436
HgaI GACGC 1 cut(s) 154
HhaI GCGC 2 cut(s) 41, 1113
Hin1I GRCGYC 1 cut(s) 39
Hin6I GCGC 2 cut(s) 39, 1111
HinP1I GCGC 2 cut(s) 39, 1111
HindIII AAGCTT 2 cut(s) 497, 1690
HinfI GANTC 9 cut(s) 55, 341, 661, 1280, 1286, 1316, 1732, 1754, 2086
HpaII CCGG 3 cut(s) 293, 1202, 1436
HphI GGTGA 5 cut(s) 421, 908, 1157, 1583, 2070
Hpy166II GTNNAC 2 cut(s) 1193, 1394
Hpy8I GTNNAC 2 cut(s) 1193, 1394
Hpy99I CGWCG 1 cut(s) 148
HpyAV CCTTC 5 cut(s) 189, 406, 550, 963, 2469
HpyCH4III ACNGT 6 cut(s) 686, 2013, 2049, 2336, 2633, 2661
HpyCH4IV ACGT 7 cut(s) 180, 216, 284, 566, 622, 1653, 1939
HpyF10VI GCNNNNNNNGC 7 cut(s) 22, 140, 496, 600, 1953, 2002, 2409
HpySE526I ACGT 7 cut(s) 180, 216, 284, 566, 622, 1653, 1939
Hsp92I GRCGYC 1 cut(s) 39
HspAI GCGC 2 cut(s) 39, 1111
KasI GGCGCC 1 cut(s) 38
Kpn2I TCCGGA 1 cut(s) 1435
Ksp22I TGATCA 1 cut(s) 2464
LmnI GCTCC 2 cut(s) 1768, 2417
Lsp1109I GCAGC 4 cut(s) 382, 2005, 2068, 2127
LweI GCATC 7 cut(s) 867, 1006, 1122, 1483, 1534, 1842, 2163
MabI ACCWGGT 1 cut(s) 1372
MaeI CTAG 6 cut(s) 764, 1106, 1484, 1833, 2106, 2562
MaeII ACGT 7 cut(s) 180, 216, 284, 566, 622, 1653, 1939
MaeIII GTNAC 5 cut(s) 342, 1381, 1718, 1922, 2279
MbiI CCGCTC 1 cut(s) 134
MflI RGATCY 1 cut(s) 1337
MhlI GDGCHC 3 cut(s) 679, 1099, 1971
MlsI TGGCCA 3 cut(s) 350, 2289, 2571
MluNI TGGCCA 3 cut(s) 350, 2289, 2571
Mly113I GGCGCC 1 cut(s) 39
MlyI GAGTC 4 cut(s) 350, 670, 1763, 2095
MmeI TCCRAC 2 cut(s) 83, 1750
Mox20I TGGCCA 3 cut(s) 350, 2289, 2571
Mph1103I ATGCAT 2 cut(s) 1963, 2074
MroI TCCGGA 1 cut(s) 1435
MscI TGGCCA 3 cut(s) 350, 2289, 2571
MseI TTAA 9 cut(s) 425, 446, 495, 618, 639, 1002, 1020, 1325, 1365
MslI CAYNNNNRTG 1 cut(s) 1188
Msp20I TGGCCA 3 cut(s) 350, 2289, 2571
MspA1I CMGCKG 1 cut(s) 1703
MspI CCGG 3 cut(s) 293, 1202, 1436
MspR9I CCNGG 3 cut(s) 1374, 1724, 2032
Mva1269I GAATGC 2 cut(s) 1798, 2074
MvaI CCWGG 3 cut(s) 1374, 1724, 2032
MwoI GCNNNNNNNGC 7 cut(s) 22, 140, 496, 600, 1953, 2002, 2409
NarI GGCGCC 1 cut(s) 39
NdeI CATATG 3 cut(s) 700, 1090, 2124
NlaIV GGNNCC 5 cut(s) 40, 676, 1450, 1764, 2511
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 2 cut(s) 342, 1922
NsiI ATGCAT 2 cut(s) 1963, 2074
NspI RCATGY 1 cut(s) 2498
PagI TCATGA 2 cut(s) 1330, 1522
PceI AGGCCT 1 cut(s) 16
PcsI WCGNNNNNNNCGW 2 cut(s) 71, 1945
PctI GAATGC 2 cut(s) 1798, 2074
PfeI GAWTC 5 cut(s) 55, 1280, 1286, 1316, 1732
PflFI GACNNNGTC 1 cut(s) 64
PflMI CCANNNNNTGG 1 cut(s) 887
PkrI GCNGC 5 cut(s) 397, 1481, 1995, 2058, 2142
PleI GAGTC 4 cut(s) 349, 669, 1762, 2094
PluTI GGCGCC 1 cut(s) 42
PpsI GAGTC 4 cut(s) 349, 669, 1762, 2094
PshBI ATTAAT 1 cut(s) 1365
Psp124BI GAGCTC 1 cut(s) 1971
Psp1406I AACGTT 1 cut(s) 1653
Psp6I CCWGG 3 cut(s) 1372, 1722, 2030
PspEI GGTNACC 1 cut(s) 1718
PspFI CCCAGC 2 cut(s) 1122, 2153
PspGI CCWGG 3 cut(s) 1372, 1722, 2030
PspN4I GGNNCC 5 cut(s) 40, 676, 1450, 1764, 2511
PspPI GGNCC 5 cut(s) 166, 758, 836, 1391, 2232
PsuI RGATCY 1 cut(s) 1337
PsyI GACNNNGTC 1 cut(s) 64
PvuII CAGCTG 1 cut(s) 1703
RsaI GTAC 6 cut(s) 122, 273, 565, 1371, 2015, 2599
RsaNI GTAC 6 cut(s) 121, 272, 564, 1370, 2014, 2598
RseI CAYNNNNRTG 1 cut(s) 1188
SacI GAGCTC 1 cut(s) 1971
SaqAI TTAA 9 cut(s) 425, 446, 495, 618, 639, 1002, 1020, 1325, 1365
SatI GCNGC 5 cut(s) 396, 1480, 1994, 2057, 2141
Sau96I GGNCC 5 cut(s) 166, 758, 836, 1391, 2232
ScaI AGTACT 1 cut(s) 122
SchI GAGTC 4 cut(s) 350, 670, 1763, 2095
ScrFI CCNGG 3 cut(s) 1374, 1724, 2032
SduI GDGCHC 3 cut(s) 679, 1099, 1971
SexAI ACCWGGT 1 cut(s) 1372
SfaNI GCATC 7 cut(s) 867, 1006, 1122, 1483, 1534, 1842, 2163
SfoI GGCGCC 1 cut(s) 40
SinI GGWCC 4 cut(s) 166, 758, 836, 1391
SmiMI CAYNNNNRTG 1 cut(s) 1188
SmlI CTYRAG 2 cut(s) 278, 578
SmoI CTYRAG 2 cut(s) 278, 578
SseBI AGGCCT 1 cut(s) 16
SsiI CCGC 5 cut(s) 114, 127, 134, 767, 1480
SspDI GGCGCC 1 cut(s) 38
SspI AATATT 3 cut(s) 334, 523, 1363
SspMI CTAG 6 cut(s) 764, 1106, 1484, 1833, 2106, 2562
SstI GAGCTC 1 cut(s) 1971
StuI AGGCCT 1 cut(s) 16
StyD4I CCNGG 3 cut(s) 1372, 1722, 2030
StyI CCWWGG 2 cut(s) 17, 1036
TaaI ACNGT 6 cut(s) 686, 2013, 2049, 2336, 2633, 2661
TaiI ACGT 7 cut(s) 183, 219, 287, 569, 625, 1656, 1942
TaqI TCGA 4 cut(s) 664, 1099, 2044, 2419
TatI WGTACW 1 cut(s) 120
TauI GCSGC 1 cut(s) 1482
TfiI GAWTC 5 cut(s) 55, 1280, 1286, 1316, 1732
Tru1I TTAA 9 cut(s) 425, 446, 495, 618, 639, 1002, 1020, 1325, 1365
Tru9I TTAA 9 cut(s) 425, 446, 495, 618, 639, 1002, 1020, 1325, 1365
TscAI CASTG 4 cut(s) 351, 1912, 2271, 2524
TseFI GTSAC 2 cut(s) 342, 1922
TseI GCWGC 4 cut(s) 395, 1993, 2056, 2140
Tsp45I GTSAC 2 cut(s) 342, 1922
TspDTI ATGAA 7 cut(s) 1511, 1683, 1803, 1941, 2141, 2438, 2658
TspGWI ACGGA 3 cut(s) 67, 205, 1473
TspRI CASTG 4 cut(s) 351, 1912, 2271, 2524
Tth111I GACNNNGTC 1 cut(s) 64
Van91I CCANNNNNTGG 1 cut(s) 887
VpaK11BI GGWCC 4 cut(s) 166, 758, 836, 1391
VspI ATTAAT 1 cut(s) 1365
XagI CCTNNNNNAGG 1 cut(s) 2370
XapI RAATTY 6 cut(s) 666, 779, 800, 917, 2477, 2557
XceI RCATGY 1 cut(s) 2498
XcmI CCANNNNNNNNNTGG 1 cut(s) 227
XspI CTAG 6 cut(s) 764, 1106, 1484, 1833, 2106, 2562
ZrmI AGTACT 1 cut(s) 122
Zsp2I ATGCAT 2 cut(s) 1963, 2074
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.