pycom04g18560

Mog1 PsbP DUF1795-like photosystem II reaction center PsbP family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0003886
Physical Location & Seq
Forward (+)
20559849 .. 20562821
2973 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 810 bp
ATGACCAAACTTATCTCCCTCCAAATTTTCAACAGCCATGAATGCCATCCTCATTCTCTCATGGCCATTCTTCTTCTCTCTCTCTCTCCCCACCCACCAAAGCCTCCCCAAAACCCTAATCCCACCACCCCAAAACCCACAATCTCTCTCCCCACCACCACTCCCACCTCCTCCAAAAGAAACTTGATCCTCAAGACAACCTCCCTCTTCCTCATTTCTCTGACCCCTCAGCAATACCCAGTTGCCCATTCTTCACCACAAGCTCCACCGCCGCCTCCAAGACCCGCCCTTTCCGGCATCTCCAACACGAAAAACTGGTTCCAGTTCTTCGGCGATGGGTTCGCCATTAGGGTCCCACCCCAGTTTCAGGACGTTCAGGAGCCTGAGGATTACAACTCGGGATTGTCCCTTTATGGAGATAAGGTAAAGCCCAAGACCTTCGCGGCGCGATTTGCATCTGCTGATGGATATGAGGTTGTGAGTGTTGTTATTCGCCCATCCAATTCACTCAAGATCACCTTTTTAGAGGCCAAAGACATAACAGATTTAGGTTCCTTGAAGGAGGCAGCAAAAATCTTCATTCCAGTTGGATCAACTGTGTACTCTGCCCGAGCTATAAGGATAAAGGAAGAAGAAGGTTTTAGGACTTATTATTTCTACGAGTTCGGTGTACAAGAACAGCATGCAGCGCTTGTAGCTGCTGTTAACGGTGGAAAGACATACATCGCTGGAGCAACTGCCCCGCAGTCTAAGTGGAACGATGATGGCGTGAAGCTTCGCTCAGCTGCTATATCCATGACTGTTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

270

Amino Acids

29.41

Weight (kDa)

9.3

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 110 - 268 2.1e-08 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 443, 448
AciI CCGC 5 cut(s) 269, 272, 285, 443, 743
AclWI GGATC 2 cut(s) 181, 598
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 1 cut(s) 24
AfaI GTAC 2 cut(s) 602, 672
AfeI AGCGCT 1 cut(s) 690
AfiI CCNNNNNNNGG 1 cut(s) 367
AgsI TTSAA 2 cut(s) 31, 559
AluBI AGCT 5 cut(s) 263, 614, 698, 775, 785
AluI AGCT 5 cut(s) 263, 614, 698, 775, 785
AlwI GGATC 2 cut(s) 181, 598
Ama87I CYCGRG 2 cut(s) 397, 609
Aor51HI AGCGCT 1 cut(s) 690
AoxI GGCC 2 cut(s) 63, 528
ApeKI GCWGC 4 cut(s) 566, 686, 698, 785
ApoI RAATTY 1 cut(s) 24
AspLEI GCGC 2 cut(s) 448, 691
AspS9I GGNCC 1 cut(s) 352
AsuHPI GGTGA 2 cut(s) 246, 508
AvaI CYCGRG 2 cut(s) 397, 609
AvaII GGWCC 1 cut(s) 352
AxyI CCTNAGG 1 cut(s) 384
BalI TGGCCA 1 cut(s) 65
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 4 cut(s) 578, 685, 698, 772
BccI CCATC 5 cut(s) 54, 329, 458, 505, 758
BfmI CTRYAG 1 cut(s) 806
BfoI RGCGCY 1 cut(s) 692
BisI GCNGC 6 cut(s) 272, 444, 567, 687, 699, 786
BlpI GCTNAGC 1 cut(s) 781
BlsI GCNGC 6 cut(s) 273, 445, 568, 688, 700, 787
Bme18I GGWCC 1 cut(s) 352
BmeT110I CYCGRG 2 cut(s) 397, 609
BmgT120I GGNCC 1 cut(s) 352
BmiI GGNNCC 5 cut(s) 320, 353, 354, 381, 553
BmrI ACTGGG 2 cut(s) 233, 355
BmsI GCATC 2 cut(s) 306, 464
BmuI ACTGGG 2 cut(s) 233, 355
BpmI CTGGAG 1 cut(s) 750
Bpu10I CCTNAGC 1 cut(s) 228
Bpu1102I GCTNAGC 1 cut(s) 781
BpuEI CTTGAG 2 cut(s) 176, 494
BsaBI GATNNNNATC 1 cut(s) 454
BsaXI ACNNNNNCTCC 4 cut(s) 145, 175, 408, 438
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse1I ACTGG 5 cut(s) 239, 320, 322, 361, 584
Bse21I CCTNAGG 1 cut(s) 384
Bse8I GATNNNNATC 1 cut(s) 454
BseGI GGATG 2 cut(s) 46, 497
BseJI GATNNNNATC 1 cut(s) 454
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMII CTCAG 3 cut(s) 242, 375, 795
BseNI ACTGG 5 cut(s) 239, 320, 322, 361, 584
BseRI GAGGAG 1 cut(s) 160
BseXI GCAGC 4 cut(s) 578, 685, 698, 772
Bsh1236I CGCG 2 cut(s) 443, 448
BshFI GGCC 2 cut(s) 65, 530
BsiHKCI CYCGRG 2 cut(s) 397, 609
BsiSI CCGG 1 cut(s) 294
BslFI GGGAC 2 cut(s) 338, 391
BslI CCNNNNNNNGG 1 cut(s) 367
BsmFI GGGAC 2 cut(s) 338, 391
BsmI GAATGC 1 cut(s) 47
BsnI GGCC 2 cut(s) 65, 530
BsoBI CYCGRG 2 cut(s) 397, 609
Bsp1407I TGTACA 1 cut(s) 670
Bsp143I GATC 3 cut(s) 186, 513, 590
Bsp1720I GCTNAGC 1 cut(s) 781
BspACI CCGC 5 cut(s) 269, 272, 285, 443, 743
BspANI GGCC 2 cut(s) 65, 530
BspCNI CTCAG 3 cut(s) 241, 376, 794
BspFNI CGCG 2 cut(s) 443, 448
BspLI GGNNCC 5 cut(s) 320, 353, 354, 381, 553
BspPI GGATC 2 cut(s) 181, 598
BsrGI TGTACA 1 cut(s) 670
BsrI ACTGG 5 cut(s) 239, 320, 322, 361, 584
BssMI GATC 3 cut(s) 186, 513, 590
Bst4CI ACNGT 3 cut(s) 598, 710, 802
Bst6I CTCTTC 1 cut(s) 212
BstAUI TGTACA 1 cut(s) 670
BstC8I GCNNGC 1 cut(s) 684
BstDEI CTNAG 4 cut(s) 228, 384, 750, 781
BstF5I GGATG 2 cut(s) 46, 497
BstFNI CGCG 2 cut(s) 443, 448
BstH2I RGCGCY 1 cut(s) 692
BstHHI GCGC 2 cut(s) 448, 691
BstKTI GATC 3 cut(s) 189, 516, 593
BstMBI GATC 3 cut(s) 186, 513, 590
BstMWI GCNNNNNNNGC 4 cut(s) 42, 452, 688, 695
BstNSI RCATGY 1 cut(s) 686
BstSFI CTRYAG 1 cut(s) 806
BstUI CGCG 2 cut(s) 443, 448
BstV1I GCAGC 4 cut(s) 578, 685, 698, 772
Bsu36I CCTNAGG 1 cut(s) 384
BsuRI GGCC 2 cut(s) 65, 530
BtgZI GCGATG 2 cut(s) 348, 709
BtsCI GGATG 2 cut(s) 46, 497
Cac8I GCNNGC 1 cut(s) 684
CfoI GCGC 2 cut(s) 448, 691
Cfr13I GGNCC 1 cut(s) 352
Csp6I GTAC 2 cut(s) 601, 671
CviAII CATG 4 cut(s) 38, 61, 683, 796
CviQI GTAC 2 cut(s) 601, 671
DdeI CTNAG 4 cut(s) 228, 384, 750, 781
DpnI GATC 3 cut(s) 188, 515, 592
DpnII GATC 3 cut(s) 186, 513, 590
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 352
Eco47III AGCGCT 1 cut(s) 690
Eco81I CCTNAGG 1 cut(s) 384
Eco88I CYCGRG 2 cut(s) 397, 609
EcoO109I RGGNCCY 1 cut(s) 352
FaeI CATG 4 cut(s) 41, 64, 686, 799
FalI AAGNNNNNCTT 2 cut(s) 503, 535
FaqI GGGAC 2 cut(s) 338, 391
FatI CATG 4 cut(s) 37, 60, 682, 795
FauI CCCGC 2 cut(s) 292, 750
Fnu4HI GCNGC 6 cut(s) 272, 444, 567, 687, 699, 786
FokI GGATG 2 cut(s) 33, 484
Fsp4HI GCNGC 6 cut(s) 272, 444, 567, 687, 699, 786
GlaI GCGC 2 cut(s) 447, 690
GluI GCNGC 6 cut(s) 272, 444, 567, 687, 699, 786
GsuI CTGGAG 1 cut(s) 750
HaeII RGCGCY 1 cut(s) 692
HaeIII GGCC 2 cut(s) 65, 530
HapII CCGG 1 cut(s) 294
HhaI GCGC 2 cut(s) 448, 691
Hin1II CATG 4 cut(s) 41, 64, 686, 799
Hin6I GCGC 2 cut(s) 446, 689
HinP1I GCGC 2 cut(s) 446, 689
HincII GTYRAC 1 cut(s) 706
HindII GTYRAC 1 cut(s) 706
HindIII AAGCTT 1 cut(s) 773
HpaI GTTAAC 1 cut(s) 706
HpaII CCGG 1 cut(s) 294
HphI GGTGA 2 cut(s) 246, 508
Hpy166II GTNNAC 3 cut(s) 601, 671, 706
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 5 cut(s) 193, 368, 377, 399, 511
Hpy8I GTNNAC 3 cut(s) 601, 671, 706
HpyAV CCTTC 3 cut(s) 448, 553, 629
HpyCH4III ACNGT 3 cut(s) 598, 710, 802
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 2 cut(s) 455, 686
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 452, 688, 695
HpyF3I CTNAG 4 cut(s) 228, 384, 750, 781
HpySE526I ACGT 1 cut(s) 372
Hsp92II CATG 4 cut(s) 41, 64, 686, 799
HspAI GCGC 2 cut(s) 446, 689
KflI GGGWCCC 1 cut(s) 352
KspAI GTTAAC 1 cut(s) 706
Kzo9I GATC 3 cut(s) 186, 513, 590
LmnI GCTCC 3 cut(s) 268, 379, 731
Lsp1109I GCAGC 4 cut(s) 578, 685, 698, 772
LweI GCATC 2 cut(s) 306, 464
MaeII ACGT 1 cut(s) 372
MalI GATC 3 cut(s) 188, 515, 592
MboI GATC 3 cut(s) 186, 513, 590
MboII GAAGA 8 cut(s) 62, 65, 199, 243, 319, 568, 641, 644
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 2 cut(s) 24, 502
MluNI TGGCCA 1 cut(s) 65
MmeI TCCRAC 2 cut(s) 327, 568
Mox20I TGGCCA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 65
MseI TTAA 1 cut(s) 705
Msp20I TGGCCA 1 cut(s) 65
MspA1I CMGCKG 1 cut(s) 785
MspI CCGG 1 cut(s) 294
Mva1269I GAATGC 1 cut(s) 47
MvnI CGCG 2 cut(s) 443, 448
MwoI GCNNNNNNNGC 4 cut(s) 42, 452, 688, 695
NdeII GATC 3 cut(s) 186, 513, 590
NlaIII CATG 4 cut(s) 41, 64, 686, 799
NlaIV GGNNCC 5 cut(s) 320, 353, 354, 381, 553
NspI RCATGY 1 cut(s) 686
PaeI GCATGC 1 cut(s) 686
PcsI WCGNNNNNNNCGW 1 cut(s) 765
PctI GAATGC 1 cut(s) 47
PkrI GCNGC 6 cut(s) 273, 445, 568, 688, 700, 787
PpuMI RGGWCCY 1 cut(s) 352
Psp5II RGGWCCY 1 cut(s) 352
PspN4I GGNNCC 5 cut(s) 320, 353, 354, 381, 553
PspPI GGNCC 1 cut(s) 352
PspPPI RGGWCCY 1 cut(s) 352
PvuII CAGCTG 1 cut(s) 785
RsaI GTAC 2 cut(s) 602, 672
RsaNI GTAC 2 cut(s) 601, 671
SaqAI TTAA 1 cut(s) 705
SatI GCNGC 6 cut(s) 272, 444, 567, 687, 699, 786
Sau3AI GATC 3 cut(s) 186, 513, 590
Sau96I GGNCC 1 cut(s) 352
SfaNI GCATC 2 cut(s) 306, 464
SfcI CTRYAG 1 cut(s) 806
SinI GGWCC 1 cut(s) 352
SmlI CTYRAG 2 cut(s) 191, 509
SmoI CTYRAG 2 cut(s) 191, 509
SphI GCATGC 1 cut(s) 686
Sse9I AATT 2 cut(s) 24, 502
SsiI CCGC 5 cut(s) 269, 272, 285, 443, 743
TaaI ACNGT 3 cut(s) 598, 710, 802
TaiI ACGT 1 cut(s) 375
TasI AATT 2 cut(s) 24, 502
TatI WGTACW 2 cut(s) 600, 670
TauI GCSGC 2 cut(s) 274, 446
Tru1I TTAA 1 cut(s) 705
Tru9I TTAA 1 cut(s) 705
TseI GCWGC 4 cut(s) 566, 686, 698, 785
TspDTI ATGAA 2 cut(s) 54, 568
VpaK11BI GGWCC 1 cut(s) 352
XapI RAATTY 1 cut(s) 24
XceI RCATGY 1 cut(s) 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.