Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001484

Physical Location & Seq

Genomic Coordinates Forward (+)

22466861 .. 22468197

Gene Structure 1337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g21170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGATGGAGTCCTCTGCCGACGACCGCCGGAGCCATTCCGGCAGCTCCAGCGACATGTCCGTCTATTTCAAAGCCGAAGTCCCTCCCAATCCTAATGACGAATATGCCACCGCTTCCTCAGGGAAGTTGGAGAGGGATGTGCAAACAGTGAGAAATTCCGGAGAATCATCATCCGCCGTCCGTACATCGTCCGGTTCGAGTCAACTCACTGCGAGCTCAAGATTGAGTCAGAACCAGGCGTTGTCTGTGACTCTCGCCAAGCTCTTCGATCAAAGAACTCCTTTTAGAAAAAAGCGGAAATATATAAAGCAGCTGGCAACAGTGAAAAATGACGGAACGGTGCAATTTGACGTTCCGGGAGATATTAAGCCACAGTATCTGGATTTCGGAACTGGAGCTGCTCACAGTGAAGCAGCTTCTGGTGCAGAAGCTTTCGGCGAAACAGAAGCTGAAGTTCGAGATATTCCTCCGTTGCAAATTGTAATGCTTATTGTCGGCACGCGAGGAGATGTGCAGCCGTTTGTTGCCATTGGAAAACGTTTGCAGGAATATGGCCATAGGGTTAGGCTAGCAACTCATGCAAATTTCAAAGATTTTGTCCTTACCGCTGGGTTGGAGTTCTATCCTTTAGGTGATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_28 UDPGT

Protein Analysis

214

Amino Acids

23.2

Weight (kDa)

6.53

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_28	PF03033	160 - 211	5.8e-16	Glycosyltransferase family 28 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07020 AT3G07020 AT3G07020
fragaria_vesca	FvH4_2g19510 FvH4_2g19510 FvH4_6g00960 FvH4_6g00960 FvH4_6g00960 FvH4_6g00960 FvH4_6g00960 FvH4_6g00960 FvH4_6g00960 FvH4_6g00960 FvH4_6g00960
malus_domestica	MD04G1239700.v1.1 MD05G1179300.v1.1 MD10G1168900.v1.1 MD12G1256800.v1.1
prunus_persica	Prupe.6G357600_v2.0.a1 Prupe.6G357600_v2.0.a1 Prupe.6G357600_v2.0.a1 Prupe.6G357600_v2.0.a1 Prupe.8G206600_v2.0.a1
pyrus_communis	pycom04g21170 pycom05g16580 pycom10g14560 pycom12g23550
rosa_chinensis	RchiOBHm_Chr3g0448421 RchiOBHm_Chr6g0285231
rosa_laevigata	RLG00000012659 RLG00000025915
rosa_multiflora	Rmu_co8366969.1_g000001 Rmu_sc0003308.1_g000009 Rmu_sc0006212.1_g000001 Rmu_sc0008044.1_g000002
rosa_roxburghii	Rroxscaffold_6G00426610 Rroxscaffold_7G00183400
rosa_rugosa	Rorug02G0612300 Rorug02G0612400 Rorug06G0173300
rosa_samantha	Rh3AG011700 Rh3BG011500 Rh3CG011200 Rh3DG011900 Rh6AG283800 Rh6BG284600 Rh6CG286200 Rh6DG279200
rosa_wichuraiana	Rw0G022080 Rw3G000900 Rw6G024420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	59
AccII	CGCG	1 cut(s)	502
AccIII	TCCGGA	1 cut(s)	158
AciI	CCGC	5 cut(s)	25, 111, 174, 295, 606
AclI	AACGTT	1 cut(s)	538
AcoI	YGGCCR	1 cut(s)	553
AcsI	RAATTY	2 cut(s)	154, 583
AcuI	CTGAAG	1 cut(s)	471
AfaI	GTAC	1 cut(s)	184
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	2 cut(s)	70, 589
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	8 cut(s)	45, 216, 262, 313, 398, 416, 431, 449
AluI	AGCT	8 cut(s)	45, 216, 262, 313, 398, 416, 431, 449
Alw21I	GWGCWC	1 cut(s)	218
AlwNI	CAGNNNCTG	3 cut(s)	379, 419, 449
Aor13HI	TCCGGA	1 cut(s)	158
AoxI	GGCC	1 cut(s)	553
ApeKI	GCWGC	5 cut(s)	42, 310, 398, 413, 514
ApoI	RAATTY	2 cut(s)	154, 583
ArsI	GACNNNNNNTTYG	4 cut(s)	63, 95, 582, 614
AsuC2I	CCSGG	1 cut(s)	357
AsuNHI	GCTAGC	1 cut(s)	568
AxyI	CCTNAGG	1 cut(s)	118
BalI	TGGCCA	1 cut(s)	555
BanII	GRGCYC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	218
BbvI	GCAGC	5 cut(s)	54, 322, 385, 425, 526
BceAI	ACGGC	2 cut(s)	161, 502
BciT130I	CCWGG	1 cut(s)	236
BclI	TGATCA	1 cut(s)	634
BcnI	CCSGG	1 cut(s)	357
BfaI	CTAG	1 cut(s)	569
BglI	GCCNNNNNGGC	1 cut(s)	39
BisI	GCNGC	5 cut(s)	43, 311, 399, 414, 515
BlsI	GCNGC	5 cut(s)	44, 312, 400, 415, 516
Bme1390I	CCNGG	2 cut(s)	236, 357
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	2 cut(s)	236, 357
BmtI	GCTAGC	1 cut(s)	572
BpmI	CTGGAG	2 cut(s)	31, 414
BpuEI	CTTGAG	1 cut(s)	202
BpuMI	CCSGG	1 cut(s)	357
BsaWI	WCCGGW	2 cut(s)	158, 191
Bse1I	ACTGG	1 cut(s)	397
Bse21I	CCTNAGG	1 cut(s)	118
BseAI	TCCGGA	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	236
BseGI	GGATG	2 cut(s)	142, 170
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	1 cut(s)	519
BseXI	GCAGC	5 cut(s)	54, 322, 385, 425, 526
BseYI	CCCAGC	1 cut(s)	608
BsgI	GTGCAG	2 cut(s)	444, 533
Bsh1236I	CGCG	1 cut(s)	502
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	555
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	218
BsiSI	CCGG	5 cut(s)	28, 39, 159, 192, 356
BslFI	GGGAC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	555
Bsp1286I	GDGCHC	1 cut(s)	218
Bsp13I	TCCGGA	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	268, 634
BspACI	CCGC	5 cut(s)	25, 111, 174, 295, 606
BspANI	GGCC	1 cut(s)	555
BspCNI	CTCAG	1 cut(s)	131
BspEI	TCCGGA	1 cut(s)	158
BspFNI	CGCG	1 cut(s)	502
BspLI	GGNNCC	1 cut(s)	32
BspOI	GCTAGC	1 cut(s)	572
BspQI	GCTCTTC	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	397
BssMI	GATC	2 cut(s)	268, 634
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	5 cut(s)	148, 322, 340, 375, 407
Bst6I	CTCTTC	1 cut(s)	269
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstC8I	GCNNGC	4 cut(s)	214, 315, 500, 570
BstDEI	CTNAG	1 cut(s)	118
BstF5I	GGATG	2 cut(s)	142, 170
BstFNI	CGCG	1 cut(s)	502
BstKTI	GATC	2 cut(s)	271, 637
BstMBI	GATC	2 cut(s)	268, 634
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 48, 422, 578
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	2 cut(s)	234, 355
BstUI	CGCG	1 cut(s)	502
BstV1I	GCAGC	5 cut(s)	54, 322, 385, 425, 526
Bsu36I	CCTNAGG	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	555
BtsCI	GGATG	2 cut(s)	142, 170
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	5 cut(s)	153, 207, 327, 412, 637
Cac8I	GCNNGC	4 cut(s)	214, 315, 500, 570
CaiI	CAGNNNCTG	3 cut(s)	379, 419, 449
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	2 cut(s)	55, 578
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	1 cut(s)	118
DpnI	GATC	2 cut(s)	270, 636
DpnII	GATC	2 cut(s)	268, 634
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
EaeI	YGGCCR	1 cut(s)	553
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
EciI	GGCGGA	1 cut(s)	163
Ecl136II	GAGCTC	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	218
Eco53kI	GAGCTC	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	471
Eco81I	CCTNAGG	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	216
EcoRII	CCWGG	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	218
FaeI	CATG	2 cut(s)	58, 581
FaiI	YATR	7 cut(s)	56, 105, 303, 305, 552, 558, 579
FalI	AAGNNNNNCTT	2 cut(s)	265, 297
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	2 cut(s)	54, 577
FbaI	TGATCA	1 cut(s)	634
Fnu4HI	GCNGC	5 cut(s)	43, 311, 399, 414, 515
FokI	GGATG	2 cut(s)	149, 157
FriOI	GRGCYC	1 cut(s)	218
Fsp4HI	GCNGC	5 cut(s)	43, 311, 399, 414, 515
FspBI	CTAG	1 cut(s)	569
GluI	GCNGC	5 cut(s)	43, 311, 399, 414, 515
GsaI	CCCAGC	1 cut(s)	612
GsuI	CTGGAG	2 cut(s)	31, 414
HaeIII	GGCC	1 cut(s)	555
HapII	CCGG	5 cut(s)	28, 39, 159, 192, 356
Hin1II	CATG	2 cut(s)	58, 581
HincII	GTYRAC	1 cut(s)	203
HindII	GTYRAC	1 cut(s)	203
HindIII	AAGCTT	1 cut(s)	429
HinfI	GANTC	5 cut(s)	8, 164, 199, 226, 250
HpaII	CCGG	5 cut(s)	28, 39, 159, 192, 356
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	2 cut(s)	231, 389
Hpy188III	TCNNGA	4 cut(s)	159, 219, 380, 458
Hpy8I	GTNNAC	1 cut(s)	203
Hpy99I	CGWCG	1 cut(s)	23
HpyCH4III	ACNGT	5 cut(s)	148, 322, 340, 375, 407
HpyCH4IV	ACGT	2 cut(s)	351, 538
HpyCH4V	TGCA	7 cut(s)	142, 343, 425, 475, 514, 544, 581
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 48, 422, 578
HpyF3I	CTNAG	1 cut(s)	118
HpySE526I	ACGT	2 cut(s)	351, 538
Hsp92II	CATG	2 cut(s)	58, 581
Kpn2I	TCCGGA	1 cut(s)	158
Ksp22I	TGATCA	1 cut(s)	634
Kzo9I	GATC	2 cut(s)	268, 634
LguI	GCTCTTC	1 cut(s)	269
LmnI	GCTCC	3 cut(s)	30, 50, 395
Lsp1109I	GCAGC	5 cut(s)	54, 322, 385, 425, 526
MaeI	CTAG	1 cut(s)	569
MaeII	ACGT	2 cut(s)	351, 538
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	2 cut(s)	270, 636
MboI	GATC	2 cut(s)	268, 634
MboII	GAAGA	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	218
MlsI	TGGCCA	1 cut(s)	555
MluCI	AATT	4 cut(s)	154, 344, 477, 583
MluNI	TGGCCA	1 cut(s)	555
MlyI	GAGTC	4 cut(s)	17, 208, 235, 244
MmeI	TCCRAC	2 cut(s)	108, 594
MnlI	CCTC	6 cut(s)	22, 93, 126, 127, 477, 497
Mox20I	TGGCCA	1 cut(s)	555
MroI	TCCGGA	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	555
MseI	TTAA	1 cut(s)	366
Msp20I	TGGCCA	1 cut(s)	555
MspA1I	CMGCKG	2 cut(s)	313, 608
MspI	CCGG	5 cut(s)	28, 39, 159, 192, 356
MspR9I	CCNGG	2 cut(s)	236, 357
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	1 cut(s)	502
MwoI	GCNNNNNNNGC	4 cut(s)	39, 48, 422, 578
NciI	CCSGG	1 cut(s)	357
NdeII	GATC	2 cut(s)	268, 634
NheI	GCTAGC	1 cut(s)	568
NlaIII	CATG	2 cut(s)	58, 581
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	247
NspI	RCATGY	1 cut(s)	58
PciI	ACATGT	1 cut(s)	54
PciSI	GCTCTTC	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	164
PfoI	TCCNGGA	1 cut(s)	355
PkrI	GCNGC	5 cut(s)	44, 312, 400, 415, 516
PleI	GAGTC	4 cut(s)	16, 207, 234, 244
PpsI	GAGTC	4 cut(s)	16, 207, 234, 244
PscI	ACATGT	1 cut(s)	54
Psp124BI	GAGCTC	1 cut(s)	218
Psp1406I	AACGTT	1 cut(s)	538
Psp6I	CCWGG	1 cut(s)	234
PspFI	CCCAGC	1 cut(s)	608
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	32
PstNI	CAGNNNCTG	3 cut(s)	379, 419, 449
PvuII	CAGCTG	1 cut(s)	313
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
SacI	GAGCTC	1 cut(s)	218
SapI	GCTCTTC	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	5 cut(s)	43, 311, 399, 414, 515
Sau3AI	GATC	2 cut(s)	268, 634
SchI	GAGTC	4 cut(s)	17, 208, 235, 244
ScrFI	CCNGG	2 cut(s)	236, 357
SduI	GDGCHC	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
Sse9I	AATT	4 cut(s)	154, 344, 477, 583
SsiI	CCGC	5 cut(s)	25, 111, 174, 295, 606
SspMI	CTAG	1 cut(s)	569
SstI	GAGCTC	1 cut(s)	218
StyD4I	CCNGG	2 cut(s)	234, 355
TaaI	ACNGT	5 cut(s)	148, 322, 340, 375, 407
TaiI	ACGT	2 cut(s)	354, 541
TaqI	TCGA	3 cut(s)	197, 267, 457
TasI	AATT	4 cut(s)	154, 344, 477, 583
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	4 cut(s)	153, 214, 327, 412
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	5 cut(s)	42, 310, 398, 413, 514
Tsp45I	GTSAC	1 cut(s)	247
TspGWI	ACGGA	4 cut(s)	49, 170, 348, 459
TspRI	CASTG	4 cut(s)	153, 214, 327, 412
XapI	RAATTY	2 cut(s)	154, 583
XceI	RCATGY	1 cut(s)	58
XspI	CTAG	1 cut(s)	569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.