Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8366969.1

Orthogroup ID

OG0001484

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 889

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8366969.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

gcattatatccaatccctcacctcgggaatccccccactcccaaatccatggccaccgagcctcccgccgaccaccgccgtgccgattccggcagctccgacacttccgtctattacgacgcacacctcgacgctagcgacgccaatggcagcagcagctcctcttcagggtttacagagaggcatgtgccagtagaagcctccggagaattgtcgaatgccggaaacggttccggaaactataccggaacctcatcgggttcgagttccggtcagcttgatacaggcccgaaattgaatcagagtcagtcattagctctatatctaaccagactcttcgacgaaaaaatccctttcagaaaaaagcttaagcatataaaacgagtggcaacagttacggataacgggactgtgcaattcgacgttccgggagatgttaaaccgcatttactggattttggaaccggagttgtttatgatgaagagagttccggtgcatcggaaaatgtgcctgatatacctccactgcaaattgtaatgctgattgttggtacgcgaggagatgttcagccatttgttgctattggaaaaaaattgcaggttatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_28 UDPGT

Protein Analysis

202

Amino Acids

21.32

Weight (kDa)

5.44

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07020 AT3G07020 AT3G07020
fragaria_vesca	FvH4_2g19510 FvH4_2g19510 FvH4_6g00960 FvH4_6g00960 FvH4_6g00960 FvH4_6g00960 FvH4_6g00960 FvH4_6g00960 FvH4_6g00960 FvH4_6g00960 FvH4_6g00960
malus_domestica	MD04G1239700.v1.1 MD05G1179300.v1.1 MD10G1168900.v1.1 MD12G1256800.v1.1
prunus_persica	Prupe.6G357600_v2.0.a1 Prupe.6G357600_v2.0.a1 Prupe.6G357600_v2.0.a1 Prupe.6G357600_v2.0.a1 Prupe.8G206600_v2.0.a1
pyrus_communis	pycom04g21170 pycom05g16580 pycom10g14560 pycom12g23550
rosa_chinensis	RchiOBHm_Chr3g0448421 RchiOBHm_Chr6g0285231
rosa_laevigata	RLG00000012659 RLG00000025915
rosa_multiflora	Rmu_co8366969.1_g000001 Rmu_sc0003308.1_g000009 Rmu_sc0006212.1_g000001 Rmu_sc0008044.1_g000002
rosa_roxburghii	Rroxscaffold_6G00426610 Rroxscaffold_7G00183400
rosa_rugosa	Rorug02G0612300 Rorug02G0612400 Rorug06G0173300
rosa_samantha	Rh3AG011700 Rh3BG011500 Rh3CG011200 Rh3DG011900 Rh6AG283800 Rh6BG284600 Rh6CG286200 Rh6DG279200
rosa_wichuraiana	Rw0G022080 Rw3G000900 Rw6G024420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
Acc36I	ACCTGC	1 cut(s)	589
AccII	CGCG	1 cut(s)	556
AccIII	TCCGGA	2 cut(s)	203, 233
AciI	CCGC	3 cut(s)	66, 76, 443
AcoI	YGGCCR	1 cut(s)	51
AcuI	CTGAAG	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	1 cut(s)	553
AfiI	CCNNNNNNNGG	2 cut(s)	23, 168
AflII	CTTAAG	1 cut(s)	368
AgsI	TTSAA	1 cut(s)	298
AleI	CACNNNNGTG	1 cut(s)	78
AluBI	AGCT	5 cut(s)	96, 159, 277, 317, 367
AluI	AGCT	5 cut(s)	96, 159, 277, 317, 367
Ama87I	CYCGRG	1 cut(s)	23
Aor13HI	TCCGGA	2 cut(s)	203, 233
AoxI	GGCC	2 cut(s)	51, 286
ApeKI	GCWGC	4 cut(s)	93, 150, 153, 156
Asp700I	GAANNNNTTC	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	429
AsuHPI	GGTGA	1 cut(s)	11
AsuNHI	GCTAGC	1 cut(s)	134
AvaI	CYCGRG	1 cut(s)	23
BalI	TGGCCA	1 cut(s)	53
BbvI	GCAGC	4 cut(s)	105, 162, 165, 168
BceAI	ACGGC	1 cut(s)	63
BcnI	CCSGG	1 cut(s)	429
BfaI	CTAG	1 cut(s)	135
BfrI	CTTAAG	1 cut(s)	368
BfuAI	ACCTGC	1 cut(s)	589
BisI	GCNGC	4 cut(s)	94, 151, 154, 157
BlsI	GCNGC	4 cut(s)	95, 152, 155, 158
Bme1390I	CCNGG	1 cut(s)	429
BmeT110I	CYCGRG	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	3 cut(s)	232, 250, 463
BmrFI	CCNGG	1 cut(s)	429
BmsI	GCATC	1 cut(s)	506
BmtI	GCTAGC	1 cut(s)	138
BpuMI	CCSGG	1 cut(s)	429
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	22, 48
BsaWI	WCCGGW	6 cut(s)	203, 233, 245, 269, 464, 491
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 168
Bse1I	ACTGG	2 cut(s)	191, 456
BseAI	TCCGGA	2 cut(s)	203, 233
BseDI	CCNNGG	2 cut(s)	22, 48
BseLI	CCNNNNNNNGG	2 cut(s)	23, 168
BseNI	ACTGG	2 cut(s)	191, 456
BseRI	GAGGAG	2 cut(s)	151, 573
BseXI	GCAGC	4 cut(s)	105, 162, 165, 168
Bsh1236I	CGCG	1 cut(s)	556
BshFI	GGCC	2 cut(s)	53, 288
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	9 cut(s)	90, 204, 222, 234, 246, 270, 428, 465, 492
BslFI	GGGAC	1 cut(s)	421
BslI	CCNNNNNNNGG	2 cut(s)	23, 168
BsmFI	GGGAC	1 cut(s)	421
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	2 cut(s)	53, 288
BsoBI	CYCGRG	1 cut(s)	23
Bsp13I	TCCGGA	2 cut(s)	203, 233
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	3 cut(s)	66, 76, 443
BspANI	GGCC	2 cut(s)	53, 288
BspEI	TCCGGA	2 cut(s)	203, 233
BspFNI	CGCG	1 cut(s)	556
BspLI	GGNNCC	3 cut(s)	232, 250, 463
BspMI	ACCTGC	1 cut(s)	589
BspOI	GCTAGC	1 cut(s)	138
BspTI	CTTAAG	1 cut(s)	368
BsrI	ACTGG	2 cut(s)	191, 456
BssECI	CCNNGG	2 cut(s)	22, 48
BssNI	GRCGYC	1 cut(s)	141
BssT1I	CCWWGG	1 cut(s)	48
Bst4CI	ACNGT	3 cut(s)	230, 394, 412
Bst6I	CTCTTC	3 cut(s)	169, 341, 477
BstACI	GRCGYC	1 cut(s)	141
BstAFI	CTTAAG	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	136
BstDSI	CCRYGG	1 cut(s)	48
BstFNI	CGCG	1 cut(s)	556
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 156
BstNSI	RCATGY	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	427
BstUI	CGCG	1 cut(s)	556
BstV1I	GCAGC	4 cut(s)	105, 162, 165, 168
BstXI	CCANNNNNNTGG	1 cut(s)	49
BsuRI	GGCC	2 cut(s)	53, 288
BtgI	CCRYGG	1 cut(s)	48
BtsI	GCAGTG	1 cut(s)	524
BtsIMutI	CAGTG	1 cut(s)	524
BveI	ACCTGC	1 cut(s)	589
Cac8I	GCNNGC	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	287
CseI	GACGC	3 cut(s)	128, 140, 149
Csp6I	GTAC	1 cut(s)	552
CviAII	CATG	2 cut(s)	49, 185
CviQI	GTAC	1 cut(s)	552
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	3 cut(s)	169, 341, 477
EarI	CTCTTC	3 cut(s)	169, 341, 477
Eco130I	CCWWGG	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	2 cut(s)	52, 188
FaiI	YATR	9 cut(s)	7, 50, 186, 243, 322, 375, 377, 477, 518
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	2 cut(s)	48, 184
FauI	CCCGC	1 cut(s)	73
Fnu4HI	GCNGC	4 cut(s)	94, 151, 154, 157
Fsp4HI	GCNGC	4 cut(s)	94, 151, 154, 157
FspBI	CTAG	1 cut(s)	135
GluI	GCNGC	4 cut(s)	94, 151, 154, 157
HaeIII	GGCC	2 cut(s)	53, 288
HapII	CCGG	9 cut(s)	90, 204, 222, 234, 246, 270, 428, 465, 492
HgaI	GACGC	3 cut(s)	128, 140, 149
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	2 cut(s)	52, 188
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	5 cut(s)	28, 86, 298, 304, 333
HpaII	CCGG	9 cut(s)	90, 204, 222, 234, 246, 270, 428, 465, 492
HphI	GGTGA	1 cut(s)	11
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	4 cut(s)	100, 303, 359, 502
Hpy188III	TCNNGA	3 cut(s)	25, 204, 234
Hpy8I	GTNNAC	1 cut(s)	174
Hpy99I	CGWCG	5 cut(s)	122, 134, 143, 344, 425
HpyCH4III	ACNGT	3 cut(s)	230, 394, 412
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	4 cut(s)	415, 497, 529, 598
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 156
HpySE526I	ACGT	1 cut(s)	423
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	52, 188
Kpn2I	TCCGGA	2 cut(s)	203, 233
LmnI	GCTCC	2 cut(s)	101, 164
Lsp1109I	GCAGC	4 cut(s)	105, 162, 165, 168
LweI	GCATC	1 cut(s)	506
MaeI	CTAG	1 cut(s)	135
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	1 cut(s)	394
MboII	GAAGA	3 cut(s)	156, 328, 494
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	5 cut(s)	209, 293, 416, 531, 593
MluNI	TGGCCA	1 cut(s)	53
MlyI	GAGTC	2 cut(s)	313, 327
MmeI	TCCRAC	1 cut(s)	123
Mox20I	TGGCCA	1 cut(s)	53
MroI	TCCGGA	2 cut(s)	203, 233
MroXI	GAANNNNTTC	1 cut(s)	229
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	2 cut(s)	369, 438
MslI	CAYNNNNRTG	1 cut(s)	78
Msp20I	TGGCCA	1 cut(s)	53
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	9 cut(s)	90, 204, 222, 234, 246, 270, 428, 465, 492
MspR9I	CCNGG	1 cut(s)	429
Mva1269I	GAATGC	1 cut(s)	223
MvnI	CGCG	1 cut(s)	556
MwoI	GCNNNNNNNGC	2 cut(s)	140, 156
NciI	CCSGG	1 cut(s)	429
NcoI	CCATGG	1 cut(s)	48
NheI	GCTAGC	1 cut(s)	134
NlaIII	CATG	2 cut(s)	52, 188
NlaIV	GGNNCC	3 cut(s)	232, 250, 463
NspI	RCATGY	1 cut(s)	188
OliI	CACNNNNGTG	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	2 cut(s)	126, 135
PctI	GAATGC	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	229
PfeI	GAWTC	3 cut(s)	28, 86, 298
PfoI	TCCNGGA	1 cut(s)	427
PkrI	GCNGC	4 cut(s)	95, 152, 155, 158
PleI	GAGTC	2 cut(s)	312, 327
PpsI	GAGTC	2 cut(s)	312, 327
PspN4I	GGNNCC	3 cut(s)	232, 250, 463
PspPI	GGNCC	1 cut(s)	287
RsaI	GTAC	1 cut(s)	553
RsaNI	GTAC	1 cut(s)	552
RseI	CAYNNNNRTG	1 cut(s)	78
SaqAI	TTAA	2 cut(s)	369, 438
SatI	GCNGC	4 cut(s)	94, 151, 154, 157
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	2 cut(s)	313, 327
ScrFI	CCNGG	1 cut(s)	429
SfaNI	GCATC	1 cut(s)	506
SmiMI	CAYNNNNRTG	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	5 cut(s)	209, 293, 416, 531, 593
SsiI	CCGC	3 cut(s)	66, 76, 443
SspMI	CTAG	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	427
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	3 cut(s)	230, 394, 412
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	5 cut(s)	129, 215, 263, 339, 420
TasI	AATT	5 cut(s)	209, 293, 416, 531, 593
TfiI	GAWTC	3 cut(s)	28, 86, 298
Tru1I	TTAA	2 cut(s)	369, 438
Tru9I	TTAA	2 cut(s)	369, 438
TscAI	CASTG	1 cut(s)	531
TseI	GCWGC	4 cut(s)	93, 150, 153, 156
TspDTI	ATGAA	1 cut(s)	495
TspGWI	ACGGA	2 cut(s)	97, 413
TspRI	CASTG	1 cut(s)	531
Vha464I	CTTAAG	1 cut(s)	368
XceI	RCATGY	1 cut(s)	188
XmnI	GAANNNNTTC	1 cut(s)	229
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.