Rh3DG011900

Sterol 3-beta-glucosyltransferase UGT80A2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001484
Physical Location & Seq
Reverse (-)
696360 .. 704139
7780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG011900.1

Sequence Viewer

Length: 1467 bp
ATGGCCACCGAGCATTCCGCCGACCACCGCCGTGCCGATTCCGGCAGCTCCGACACTTCCGTCTATTACGACGCACACCTCGACGCTAGCGACGCCAATGGCAGCAGCAGCTCCTCTTCAGGGTTTACAGAGAGCCATGTGCCAATAGAAGCCTCCGGAGAATTATCGAATGCCGGAAACGGTTCCGGAAACTATACCGGAACCTCATCGGGTTCGAGTTCCGGTCAGCTTGATACAGGCCCGAAATTGAATCAGAGTCAGTCATTAGCTGTATATCTAACCAGACTCTTCGACGAAAAAATCCCTTTCAGAAAAAAGCTTAAGCATATAAAACGAGTGGCAACAGTTACGGATAACGGGACTGTGCAATTCGACGTTCCGGGAGATGTTAAACCGCATTTACTGGATTTTGGAACCGGAGTTGTTTATGATGAAGAGAGTTCCGGTGCATCGGAAAATGTGCCTGATATACCTCCACTGCAAATTGTAATGCTGATTGTTGGTACGCGAGGAGATGTTCAGCCATTTGTTGCTATTGGAAAAAAATTGCAGGAATATGGCCACAGGGTTAGGCTAGCAACTCATGCAAATTTCAAAGATTTTGTCCTTACTGCTGGGTTGGAGTTCTTTCCTTTAGGTGGAGATCCGAAAGTTCTTGCTGAATATATGGTCAAGAATAAAGGTTTCTTGCCATCGGGACCTTCGGAAGTATCTATTCAGCGACAGCAAATGAAAGAAATAATATTTTCTTTACTTCCTGCGTGCAAGGAACCTGATCCTGATACCAAAGTCCCGTTTAAAGCAGATGCAATAATTGCCAACCCACCAGCATATGGGCACTCTCATGTTGCTGAGGCACTAAAAGTACCGATTCATATATTTTTCACAATGCCTTGGACGCCTACCAGTGAATTCCCTCATCCTCTATCCCGTGTCAAGCAACATATTGGATATAGACTATCATATCAAATAGTCGATGCATTAATTTGGCTAGGAATTCGAGACATGATAAATGAGTTTAGGAAGAAAATGCTGAAGCTGAGACGTACCACATATTTAAGTGGATACTATAGTACTCCTCCTGACGTTCCCTATGGGTATATATGGAGTCCTCATCTTGTTCCCAAACCTAAAGATTGGGGTCCTAAGATTGATGTCGTTGGGTTTTGTTTTCTTGACCTTGCTTCAAATTATGAACCTCCTGATTCACTTGTGAAGTGGCTTGGAGCTGGTGAACAGCCTGTCTATGTTGGATTTGGTAGCCTTCCTCTTCAAGAACCAGAGAAGATGACCAATATTATTCTTCAAGCTCTGGAAATTACTGGACAGAGAGGCATTATCAACAAAGGCTGGGGTGGCCTTGGTAATTCGGTAGAACCAAATGATTCTGTGTACTTAGTGGACAATTGCCCCCATGATTGGCTCTTCCTACGATGCTTTGCCGTGGTAAATTCTTTATGTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_28 UDPGT

Protein Analysis

488

Amino Acids

53.67

Weight (kDa)

6.02

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_28 PF03033 162 - 305 1.8e-31 Glycosyltransferase family 28 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 59
AccB7I CCANNNNNTGG 1 cut(s) 833
AccII CGCG 1 cut(s) 508
AccIII TCCGGA 2 cut(s) 155, 185
AciI CCGC 3 cut(s) 18, 28, 395
AclWI GGATC 2 cut(s) 638, 770
AcoI YGGCCR 2 cut(s) 3, 559
AcsI RAATTY 4 cut(s) 589, 911, 996, 1450
AcuI CTGAAG 2 cut(s) 102, 1055
AcyI GRCGYC 2 cut(s) 93, 899
AfaI GTAC 5 cut(s) 505, 867, 1048, 1075, 1394
AfiI CCNNNNNNNGG 4 cut(s) 120, 638, 833, 1419
AflII CTTAAG 1 cut(s) 320
AgsI TTSAA 5 cut(s) 250, 595, 1188, 1274, 1307
AleI CACNNNNGTG 1 cut(s) 30
AluBI AGCT 8 cut(s) 48, 111, 229, 269, 319, 1039, 1229, 1310
AluI AGCT 8 cut(s) 48, 111, 229, 269, 319, 1039, 1229, 1310
Alw26I GTCTC 2 cut(s) 996, 1036
AlwI GGATC 2 cut(s) 638, 770
Aor13HI TCCGGA 2 cut(s) 155, 185
AoxI GGCC 4 cut(s) 3, 238, 559, 1357
ApeKI GCWGC 4 cut(s) 45, 102, 105, 108
ApoI RAATTY 4 cut(s) 589, 911, 996, 1450
ArsI GACNNNNNNTTYG 2 cut(s) 588, 620
AseI ATTAAT 1 cut(s) 983
Asp700I GAANNNNTTC 1 cut(s) 181
AspS9I GGNCC 3 cut(s) 239, 698, 1142
AsuC2I CCSGG 1 cut(s) 381
AsuHPI GGTGA 1 cut(s) 1244
AsuNHI GCTAGC 2 cut(s) 86, 574
AvaII GGWCC 2 cut(s) 698, 1142
BaeGI GKGCMC 1 cut(s) 840
BaeI ACNNNNGTAYC 4 cut(s) 774, 807, 1057, 1090
BalI TGGCCA 2 cut(s) 5, 561
BbvCI CCTCAGC 1 cut(s) 852
BbvI GCAGC 4 cut(s) 57, 114, 117, 120
BccI CCATC 1 cut(s) 700
BceAI ACGGC 2 cut(s) 15, 1427
BciVI GTATCC 1 cut(s) 1058
BcnI CCSGG 1 cut(s) 381
BcoDI GTCTC 2 cut(s) 996, 1036
BfaI CTAG 3 cut(s) 87, 575, 992
BfmI CTRYAG 1 cut(s) 1069
BfrI CTTAAG 1 cut(s) 320
BfuI GTATCC 1 cut(s) 1058
BisI GCNGC 4 cut(s) 46, 103, 106, 109
BlsI GCNGC 4 cut(s) 47, 104, 107, 110
BmcAI AGTACT 1 cut(s) 1075
Bme1390I CCNGG 1 cut(s) 381
Bme18I GGWCC 2 cut(s) 698, 1142
BmgT120I GGNCC 3 cut(s) 239, 698, 1142
BmiI GGNNCC 6 cut(s) 184, 202, 415, 699, 771, 1143
BmrFI CCNGG 1 cut(s) 381
BmsI GCATC 4 cut(s) 458, 796, 967, 1424
BmtI GCTAGC 2 cut(s) 90, 578
Bpu10I CCTNAGC 1 cut(s) 852
BpuMI CCSGG 1 cut(s) 381
BsaHI GRCGYC 2 cut(s) 93, 899
BsaJI CCNNGG 3 cut(s) 893, 1360, 1443
BsaWI WCCGGW 6 cut(s) 155, 185, 197, 221, 416, 443
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 638, 833, 1419
Bse1I ACTGG 3 cut(s) 408, 906, 1327
BseAI TCCGGA 2 cut(s) 155, 185
BseDI CCNNGG 3 cut(s) 893, 1360, 1443
BseGI GGATG 1 cut(s) 919
BseLI CCNNNNNNNGG 4 cut(s) 120, 638, 833, 1419
BseMII CTCAG 2 cut(s) 843, 1031
BseNI ACTGG 3 cut(s) 408, 906, 1327
BseRI GAGGAG 3 cut(s) 103, 525, 1068
BseSI GKGCMC 1 cut(s) 840
BseXI GCAGC 4 cut(s) 57, 114, 117, 120
BseYI CCCAGC 2 cut(s) 614, 1350
Bsh1236I CGCG 1 cut(s) 508
BshFI GGCC 4 cut(s) 5, 240, 561, 1359
BsiSI CCGG 9 cut(s) 42, 156, 174, 186, 198, 222, 380, 417, 444
BslFI GGGAC 3 cut(s) 373, 711, 776
BslI CCNNNNNNNGG 4 cut(s) 120, 638, 833, 1419
BsmAI GTCTC 2 cut(s) 996, 1036
BsmBI CGTCTC 1 cut(s) 1036
BsmFI GGGAC 3 cut(s) 373, 711, 776
BsmI GAATGC 2 cut(s) 13, 175
BsnI GGCC 4 cut(s) 5, 240, 561, 1359
Bsp1286I GDGCHC 1 cut(s) 840
Bsp13I TCCGGA 2 cut(s) 155, 185
Bsp143I GATC 2 cut(s) 643, 775
BspACI CCGC 3 cut(s) 18, 28, 395
BspANI GGCC 4 cut(s) 5, 240, 561, 1359
BspCNI CTCAG 2 cut(s) 844, 1032
BspEI TCCGGA 2 cut(s) 155, 185
BspFNI CGCG 1 cut(s) 508
BspLI GGNNCC 6 cut(s) 184, 202, 415, 699, 771, 1143
BspOI GCTAGC 2 cut(s) 90, 578
BspPI GGATC 2 cut(s) 638, 770
BspQI GCTCTTC 1 cut(s) 1430
BspTI CTTAAG 1 cut(s) 320
BsrI ACTGG 3 cut(s) 408, 906, 1327
BssECI CCNNGG 3 cut(s) 893, 1360, 1443
BssMI GATC 2 cut(s) 643, 775
BssNI GRCGYC 2 cut(s) 93, 899
BssT1I CCWWGG 2 cut(s) 893, 1360
Bst4CI ACNGT 3 cut(s) 182, 346, 364
Bst6I CTCTTC 5 cut(s) 121, 293, 429, 1275, 1430
BstACI GRCGYC 2 cut(s) 93, 899
BstAFI CTTAAG 1 cut(s) 320
BstAPI GCANNNNNTGC 2 cut(s) 584, 815
BstC8I GCNNGC 3 cut(s) 88, 576, 763
BstDEI CTNAG 4 cut(s) 852, 1040, 1146, 1396
BstDSI CCRYGG 1 cut(s) 1443
BstF5I GGATG 1 cut(s) 919
BstFNI CGCG 1 cut(s) 508
BstKTI GATC 2 cut(s) 646, 778
BstMAI GTCTC 2 cut(s) 996, 1036
BstMBI GATC 2 cut(s) 643, 775
BstMWI GCNNNNNNNGC 6 cut(s) 92, 108, 584, 815, 898, 1356
BstSCI CCNGG 1 cut(s) 379
BstSFI CTRYAG 1 cut(s) 1069
BstSLI GKGCMC 1 cut(s) 840
BstUI CGCG 1 cut(s) 508
BstV1I GCAGC 4 cut(s) 57, 114, 117, 120
BstX2I RGATCY 1 cut(s) 643
BstYI RGATCY 1 cut(s) 643
BsuI GTATCC 1 cut(s) 1058
BsuRI GGCC 4 cut(s) 5, 240, 561, 1359
BtgI CCRYGG 1 cut(s) 1443
BtsCI GGATG 1 cut(s) 919
BtsI GCAGTG 1 cut(s) 476
BtsIMutI CAGTG 2 cut(s) 476, 913
Cac8I GCNNGC 3 cut(s) 88, 576, 763
Cfr13I GGNCC 3 cut(s) 239, 698, 1142
CseI GACGC 4 cut(s) 80, 92, 101, 907
Csp6I GTAC 5 cut(s) 504, 866, 1047, 1074, 1393
CviAII CATG 5 cut(s) 137, 584, 845, 1006, 1415
CviQI GTAC 5 cut(s) 504, 866, 1047, 1074, 1393
DdeI CTNAG 4 cut(s) 852, 1040, 1146, 1396
DpnI GATC 2 cut(s) 645, 777
DpnII GATC 2 cut(s) 643, 775
DraI TTTAAA 1 cut(s) 799
DrdI GACNNNNNNGTC 1 cut(s) 59
DseDI GACNNNNNNGTC 1 cut(s) 59
EaeI YGGCCR 2 cut(s) 3, 559
Eam1104I CTCTTC 5 cut(s) 121, 293, 429, 1275, 1430
EarI CTCTTC 5 cut(s) 121, 293, 429, 1275, 1430
EciI GGCGGA 1 cut(s) 7
Eco130I CCWWGG 2 cut(s) 893, 1360
Eco47I GGWCC 2 cut(s) 698, 1142
Eco57I CTGAAG 2 cut(s) 102, 1055
EcoO109I RGGNCCY 2 cut(s) 698, 1142
EcoRI GAATTC 2 cut(s) 911, 996
EcoT14I CCWWGG 2 cut(s) 893, 1360
EcoT22I ATGCAT 1 cut(s) 982
ErhI CCWWGG 2 cut(s) 893, 1360
Esp3I CGTCTC 1 cut(s) 1036
FaeI CATG 5 cut(s) 140, 587, 848, 1009, 1418
FaqI GGGAC 3 cut(s) 373, 711, 776
FatI CATG 5 cut(s) 136, 583, 844, 1005, 1414
FauNDI CATATG 1 cut(s) 832
Fnu4HI GCNGC 4 cut(s) 46, 103, 106, 109
FokI GGATG 1 cut(s) 906
Fsp4HI GCNGC 4 cut(s) 46, 103, 106, 109
FspBI CTAG 3 cut(s) 87, 575, 992
GluI GCNGC 4 cut(s) 46, 103, 106, 109
GsaI CCCAGC 2 cut(s) 618, 1354
HaeIII GGCC 4 cut(s) 5, 240, 561, 1359
HapII CCGG 9 cut(s) 42, 156, 174, 186, 198, 222, 380, 417, 444
HgaI GACGC 4 cut(s) 80, 92, 101, 907
Hin1I GRCGYC 2 cut(s) 93, 899
Hin1II CATG 5 cut(s) 140, 587, 848, 1009, 1418
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 8 cut(s) 38, 250, 256, 285, 871, 1108, 1205, 1385
HpaII CCGG 9 cut(s) 42, 156, 174, 186, 198, 222, 380, 417, 444
HphI GGTGA 1 cut(s) 1244
Hpy166II GTNNAC 4 cut(s) 126, 1235, 1393, 1402
Hpy188I TCNGA 6 cut(s) 52, 255, 311, 454, 648, 706
Hpy8I GTNNAC 4 cut(s) 126, 1235, 1393, 1402
Hpy99I CGWCG 5 cut(s) 74, 86, 95, 296, 377
HpyAV CCTTC 2 cut(s) 711, 1274
HpyCH4III ACNGT 3 cut(s) 182, 346, 364
HpyCH4IV ACGT 3 cut(s) 375, 1045, 1086
HpyCH4V TGCA 8 cut(s) 367, 449, 481, 550, 587, 765, 809, 980
HpyF10VI GCNNNNNNNGC 6 cut(s) 92, 108, 584, 815, 898, 1356
HpyF3I CTNAG 4 cut(s) 852, 1040, 1146, 1396
HpySE526I ACGT 3 cut(s) 375, 1045, 1086
Hsp92I GRCGYC 2 cut(s) 93, 899
Hsp92II CATG 5 cut(s) 140, 587, 848, 1009, 1418
Kpn2I TCCGGA 2 cut(s) 155, 185
Kzo9I GATC 2 cut(s) 643, 775
LguI GCTCTTC 1 cut(s) 1430
LmnI GCTCC 3 cut(s) 53, 116, 1226
Lsp1109I GCAGC 4 cut(s) 57, 114, 117, 120
LweI GCATC 4 cut(s) 458, 796, 967, 1424
MaeI CTAG 3 cut(s) 87, 575, 992
MaeII ACGT 3 cut(s) 375, 1045, 1086
MaeIII GTNAC 1 cut(s) 346
MalI GATC 2 cut(s) 645, 777
MboI GATC 2 cut(s) 643, 775
MboII GAAGA 8 cut(s) 108, 280, 446, 1036, 1262, 1295, 1297, 1417
MfeI CAATTG 1 cut(s) 1405
MflI RGATCY 1 cut(s) 643
MhlI GDGCHC 1 cut(s) 840
MlsI TGGCCA 2 cut(s) 5, 561
MluNI TGGCCA 2 cut(s) 5, 561
MlyI GAGTC 3 cut(s) 265, 279, 1117
MmeI TCCRAC 3 cut(s) 75, 600, 1231
Mox20I TGGCCA 2 cut(s) 5, 561
Mph1103I ATGCAT 1 cut(s) 982
MroI TCCGGA 2 cut(s) 155, 185
MroXI GAANNNNTTC 1 cut(s) 181
MscI TGGCCA 2 cut(s) 5, 561
MseI TTAA 5 cut(s) 321, 390, 798, 983, 1058
MslI CAYNNNNRTG 2 cut(s) 30, 843
Msp20I TGGCCA 2 cut(s) 5, 561
MspCI CTTAAG 1 cut(s) 320
MspI CCGG 9 cut(s) 42, 156, 174, 186, 198, 222, 380, 417, 444
MspR9I CCNGG 1 cut(s) 381
MunI CAATTG 1 cut(s) 1405
Mva1269I GAATGC 2 cut(s) 13, 175
MvnI CGCG 1 cut(s) 508
MwoI GCNNNNNNNGC 6 cut(s) 92, 108, 584, 815, 898, 1356
NciI CCSGG 1 cut(s) 381
NdeI CATATG 1 cut(s) 832
NdeII GATC 2 cut(s) 643, 775
NheI GCTAGC 2 cut(s) 86, 574
NlaIII CATG 5 cut(s) 140, 587, 848, 1009, 1418
NlaIV GGNNCC 6 cut(s) 184, 202, 415, 699, 771, 1143
NsiI ATGCAT 1 cut(s) 982
OliI CACNNNNGTG 1 cut(s) 30
PciSI GCTCTTC 1 cut(s) 1430
PcsI WCGNNNNNNNCGW 2 cut(s) 78, 87
PctI GAATGC 2 cut(s) 13, 175
PdmI GAANNNNTTC 1 cut(s) 181
PfeI GAWTC 5 cut(s) 38, 250, 871, 1205, 1385
PflMI CCANNNNNTGG 1 cut(s) 833
PfoI TCCNGGA 1 cut(s) 379
PkrI GCNGC 4 cut(s) 47, 104, 107, 110
PleI GAGTC 3 cut(s) 264, 279, 1116
PpsI GAGTC 3 cut(s) 264, 279, 1116
PpuMI RGGWCCY 2 cut(s) 698, 1142
PshBI ATTAAT 1 cut(s) 983
Psp5II RGGWCCY 2 cut(s) 698, 1142
PspFI CCCAGC 2 cut(s) 614, 1350
PspN4I GGNNCC 6 cut(s) 184, 202, 415, 699, 771, 1143
PspPI GGNCC 3 cut(s) 239, 698, 1142
PspPPI RGGWCCY 2 cut(s) 698, 1142
PsuI RGATCY 1 cut(s) 643
RsaI GTAC 5 cut(s) 505, 867, 1048, 1075, 1394
RsaNI GTAC 5 cut(s) 504, 866, 1047, 1074, 1393
RseI CAYNNNNRTG 2 cut(s) 30, 843
SapI GCTCTTC 1 cut(s) 1430
SaqAI TTAA 5 cut(s) 321, 390, 798, 983, 1058
SatI GCNGC 4 cut(s) 46, 103, 106, 109
Sau3AI GATC 2 cut(s) 643, 775
Sau96I GGNCC 3 cut(s) 239, 698, 1142
ScaI AGTACT 1 cut(s) 1075
SchI GAGTC 3 cut(s) 265, 279, 1117
ScrFI CCNGG 1 cut(s) 381
SduI GDGCHC 1 cut(s) 840
SfaNI GCATC 4 cut(s) 458, 796, 967, 1424
SfcI CTRYAG 1 cut(s) 1069
SinI GGWCC 2 cut(s) 698, 1142
SmiMI CAYNNNNRTG 2 cut(s) 30, 843
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
SsiI CCGC 3 cut(s) 18, 28, 395
SspI AATATT 2 cut(s) 744, 1297
SspMI CTAG 3 cut(s) 87, 575, 992
StyD4I CCNGG 1 cut(s) 379
StyI CCWWGG 2 cut(s) 893, 1360
TaaI ACNGT 3 cut(s) 182, 346, 364
TaiI ACGT 3 cut(s) 378, 1048, 1089
TaqI TCGA 7 cut(s) 81, 167, 215, 291, 372, 975, 1000
TatI WGTACW 2 cut(s) 1073, 1392
TfiI GAWTC 5 cut(s) 38, 250, 871, 1205, 1385
Tru1I TTAA 5 cut(s) 321, 390, 798, 983, 1058
Tru9I TTAA 5 cut(s) 321, 390, 798, 983, 1058
TscAI CASTG 2 cut(s) 483, 913
TseI GCWGC 4 cut(s) 45, 102, 105, 108
TspDTI ATGAA 4 cut(s) 447, 746, 863, 1209
TspGWI ACGGA 2 cut(s) 49, 365
TspRI CASTG 2 cut(s) 483, 913
Van91I CCANNNNNTGG 1 cut(s) 833
Vha464I CTTAAG 1 cut(s) 320
VpaK11BI GGWCC 2 cut(s) 698, 1142
VspI ATTAAT 1 cut(s) 983
XapI RAATTY 4 cut(s) 589, 911, 996, 1450
XmnI GAANNNNTTC 1 cut(s) 181
XspI CTAG 3 cut(s) 87, 575, 992
ZrmI AGTACT 1 cut(s) 1075
Zsp2I ATGCAT 1 cut(s) 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.