pycom05g00540

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0005717
Physical Location & Seq
Forward (+)
712597 .. 714137
1541 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 312 bp
ATGGTGGGAAAAGGAAGCATCAAGGCTGAGGACTTGACCTTGTGCTTTGAGAAGCTTATGATGGAAGGAAGGGTGATGATCACTGATTGGAAGGATATTCCAATAGAGCTGCTTCTGCAAATCCTGGCGCTTACGGATGATCAGACGGTGATCCTGGCGTCTGGAGTCTGCCGTGGCTGGAGAGATGCTGTTTGCTTGGGCCTTACTCGCCTCTCCCTCTCATGGTGCACCAAGAACATGAATAGCTTGGTCCTATCTCTAGCTCCTAAGTTTACGAGATTGCAGACTCTAATACTGCGTCAAGATCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010286 GO:0010311 GO:0010498 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030163 GO:0031146 GO:0031461 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048581 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051302 GO:0051603 GO:0051716 GO:0051781 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901332 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905392 GO:1905393 GO:1990234 GO:2000023 GO:2000026 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04068 ko04110 ko04120 ko04150 ko05168 ko05169 ko05200 ko05203 ko05222 map04068 map04110 map04120 map04150 map05168 map05169 map05200 map05203 map05222
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

104

Amino Acids

11.62

Weight (kDa)

8.44

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 30 - 65 1.9e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 145
AcyI GRCGYC 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 222
AjnI CCWGG 2 cut(s) 123, 153
AluBI AGCT 4 cut(s) 55, 109, 246, 263
AluI AGCT 4 cut(s) 55, 109, 246, 263
Alw21I GWGCWC 1 cut(s) 230
Alw44I GTGCAC 1 cut(s) 226
AlwI GGATC 1 cut(s) 145
AoxI GGCC 1 cut(s) 199
ApaLI GTGCAC 1 cut(s) 226
ApeKI GCWGC 1 cut(s) 109
AspLEI GCGC 1 cut(s) 130
AspS9I GGNCC 2 cut(s) 199, 250
AsuHPI GGTGA 2 cut(s) 85, 160
AvaII GGWCC 1 cut(s) 250
BaeGI GKGCMC 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 230
BbvCI CCTCAGC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 96
BccI CCATC 1 cut(s) 55
BceAI ACGGC 1 cut(s) 156
BciT130I CCWGG 2 cut(s) 125, 155
BclI TGATCA 2 cut(s) 78, 139
BfaI CTAG 1 cut(s) 260
BfoI RGCGCY 1 cut(s) 131
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
Bme1390I CCNGG 2 cut(s) 125, 155
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 2 cut(s) 199, 250
BmrFI CCNGG 2 cut(s) 125, 155
BmsI GCATC 2 cut(s) 27, 175
BpmI CTGGAG 2 cut(s) 183, 199
Bpu10I CCTNAGC 1 cut(s) 27
Bsa29I ATCGAT 1 cut(s) 307
BsaHI GRCGYC 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 172
Bsc4I CCNNNNNNNGG 1 cut(s) 222
BseBI CCWGG 2 cut(s) 125, 155
BseCI ATCGAT 1 cut(s) 307
BseDI CCNNGG 1 cut(s) 172
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMII CTCAG 1 cut(s) 18
BseSI GKGCMC 1 cut(s) 230
BseXI GCAGC 1 cut(s) 96
BshFI GGCC 1 cut(s) 201
BshVI ATCGAT 1 cut(s) 307
BsiHKAI GWGCWC 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 222
BsnI GGCC 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 230
Bsp143I GATC 4 cut(s) 78, 139, 150, 304
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 1 cut(s) 19
BspDI ATCGAT 1 cut(s) 307
BspPI GGATC 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 4 cut(s) 78, 139, 150, 304
BssNI GRCGYC 1 cut(s) 158
Bst2UI CCWGG 2 cut(s) 125, 155
Bst4CI ACNGT 1 cut(s) 148
BstACI GRCGYC 1 cut(s) 158
BstDEI CTNAG 2 cut(s) 27, 267
BstDSI CCRYGG 1 cut(s) 172
BstF5I GGATG 1 cut(s) 142
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 4 cut(s) 81, 142, 153, 307
BstMBI GATC 4 cut(s) 78, 139, 150, 304
BstMWI GCNNNNNNNGC 2 cut(s) 115, 207
BstNI CCWGG 2 cut(s) 125, 155
BstSCI CCNGG 2 cut(s) 123, 153
BstSLI GKGCMC 1 cut(s) 230
BstV1I GCAGC 1 cut(s) 96
Bsu15I ATCGAT 1 cut(s) 307
BsuRI GGCC 1 cut(s) 201
BsuTUI ATCGAT 1 cut(s) 307
BtgI CCRYGG 1 cut(s) 172
BtsCI GGATG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 81
CfoI GCGC 1 cut(s) 130
Cfr13I GGNCC 2 cut(s) 199, 250
ClaI ATCGAT 1 cut(s) 307
CseI GACGC 2 cut(s) 147, 287
CviAII CATG 2 cut(s) 222, 238
CviJI RGCY 7 cut(s) 26, 55, 109, 177, 201, 246, 263
CviKI_1 RGCY 7 cut(s) 26, 55, 109, 177, 201, 246, 263
DdeI CTNAG 2 cut(s) 27, 267
DpnI GATC 4 cut(s) 80, 141, 152, 306
DpnII GATC 4 cut(s) 78, 139, 150, 304
Eco47I GGWCC 1 cut(s) 250
EcoRII CCWGG 2 cut(s) 123, 153
FaeI CATG 2 cut(s) 225, 241
FaiI YATR 3 cut(s) 59, 223, 239
FatI CATG 2 cut(s) 221, 237
FbaI TGATCA 2 cut(s) 78, 139
Fnu4HI GCNGC 1 cut(s) 110
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 110
FspBI CTAG 1 cut(s) 260
GlaI GCGC 1 cut(s) 129
GluI GCNGC 1 cut(s) 110
GsuI CTGGAG 2 cut(s) 183, 199
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 1 cut(s) 201
HgaI GACGC 2 cut(s) 147, 287
HhaI GCGC 1 cut(s) 130
Hin1I GRCGYC 1 cut(s) 158
Hin1II CATG 2 cut(s) 225, 241
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 2 cut(s) 165, 286
HphI GGTGA 2 cut(s) 85, 160
Hpy166II GTNNAC 2 cut(s) 228, 273
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 2 cut(s) 162, 302
Hpy8I GTNNAC 2 cut(s) 228, 273
HpyAV CCTTC 3 cut(s) 59, 63, 85
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 3 cut(s) 118, 228, 283
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 207
HpyF3I CTNAG 2 cut(s) 27, 267
Hsp92I GRCGYC 1 cut(s) 158
Hsp92II CATG 2 cut(s) 225, 241
HspAI GCGC 1 cut(s) 128
Ksp22I TGATCA 2 cut(s) 78, 139
Kzo9I GATC 4 cut(s) 78, 139, 150, 304
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 6 cut(s) 110, 137, 140, 147, 163, 167
Lsp1109I GCAGC 1 cut(s) 96
LweI GCATC 2 cut(s) 27, 175
MaeI CTAG 1 cut(s) 260
MalI GATC 4 cut(s) 80, 141, 152, 306
MboI GATC 4 cut(s) 78, 139, 150, 304
MhlI GDGCHC 1 cut(s) 230
MlyI GAGTC 2 cut(s) 174, 280
MnlI CCTC 3 cut(s) 22, 221, 227
MspR9I CCNGG 2 cut(s) 125, 155
MvaI CCWGG 2 cut(s) 125, 155
MwoI GCNNNNNNNGC 2 cut(s) 115, 207
NdeII GATC 4 cut(s) 78, 139, 150, 304
NlaIII CATG 2 cut(s) 225, 241
PkrI GCNGC 1 cut(s) 111
PleI GAGTC 2 cut(s) 173, 280
PpsI GAGTC 2 cut(s) 173, 280
Psp6I CCWGG 2 cut(s) 123, 153
PspGI CCWGG 2 cut(s) 123, 153
PspPI GGNCC 2 cut(s) 199, 250
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 4 cut(s) 78, 139, 150, 304
Sau96I GGNCC 2 cut(s) 199, 250
SchI GAGTC 2 cut(s) 174, 280
ScrFI CCNGG 2 cut(s) 125, 155
SduI GDGCHC 1 cut(s) 230
SetI ASST 5 cut(s) 41, 57, 111, 248, 265
SfaNI GCATC 2 cut(s) 27, 175
SinI GGWCC 1 cut(s) 250
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 2 cut(s) 123, 153
TaaI ACNGT 1 cut(s) 148
TaqI TCGA 1 cut(s) 307
TscAI CASTG 1 cut(s) 88
TseI GCWGC 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 254
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 1 cut(s) 88
VneI GTGCAC 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 250
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.