pycom05g02500

QWRF motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0002875
Physical Location & Seq
Reverse (-)
2989149 .. 2989358
210 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g02500.1

Sequence Viewer

Length: 210 bp
ATGCATGTGCAGCTGCTGCAAGCTAAAAATCACCATTTAGCTTCAGATAGATCGATCTCAACACATCCTCGTCTCCTCCAGCAGATTTTCCTCCTCTTCATTGTCTGCAACCTGGAAACTCGTCAGCGCGCCTATTTCCAGCAACAACCCATCGAGCCAGACAAAATTCCCACACTTCCTCCTACCTCAGGACCTTCTCATCACCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QWRF

Protein Analysis

70

Amino Acids

7.99

Weight (kDa)

9.19

Isoelectric Point (pI)

57.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 129
AcsI RAATTY 1 cut(s) 165
AcuI CTGAAG 1 cut(s) 27
AfiI CCNNNNNNNGG 1 cut(s) 188
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 3 cut(s) 13, 23, 41
AluI AGCT 3 cut(s) 13, 23, 41
Alw26I GTCTC 1 cut(s) 77
AlwNI CAGNNNCTG 1 cut(s) 16
ApeKI GCWGC 3 cut(s) 10, 13, 16
ApoI RAATTY 1 cut(s) 165
AspLEI GCGC 2 cut(s) 129, 131
AspS9I GGNCC 1 cut(s) 191
AsuHPI GGTGA 2 cut(s) 23, 194
AvaII GGWCC 1 cut(s) 191
AxyI CCTNAGG 1 cut(s) 187
BbvI GCAGC 2 cut(s) 3, 22
BccI CCATC 1 cut(s) 158
BciT130I CCWGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 77
BisI GCNGC 3 cut(s) 11, 14, 17
BlsI GCNGC 3 cut(s) 12, 15, 18
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 113
BpmI CTGGAG 1 cut(s) 62
Bsa29I ATCGAT 1 cut(s) 53
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse21I CCTNAGG 1 cut(s) 187
BseBI CCWGG 1 cut(s) 113
BseCI ATCGAT 1 cut(s) 53
BseGI GGATG 1 cut(s) 64
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMII CTCAG 1 cut(s) 201
BsePI GCGCGC 1 cut(s) 127
BseRI GAGGAG 2 cut(s) 65, 83
BseXI GCAGC 2 cut(s) 3, 22
BsgI GTGCAG 1 cut(s) 29
Bsh1236I CGCG 1 cut(s) 129
BshVI ATCGAT 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 77
BsmBI CGTCTC 1 cut(s) 77
Bsp143I GATC 2 cut(s) 50, 54
BspCNI CTCAG 1 cut(s) 200
BspDI ATCGAT 1 cut(s) 53
BspFNI CGCG 1 cut(s) 129
BssHII GCGCGC 1 cut(s) 127
BssMI GATC 2 cut(s) 50, 54
Bst2UI CCWGG 1 cut(s) 113
Bst6I CTCTTC 1 cut(s) 101
BstAPI GCANNNNNTGC 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 21, 129
BstDEI CTNAG 1 cut(s) 187
BstENI CCTNNNNNAGG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 64
BstFNI CGCG 1 cut(s) 129
BstHHI GCGC 2 cut(s) 129, 131
BstKTI GATC 2 cut(s) 53, 57
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 2 cut(s) 50, 54
BstMWI GCNNNNNNNGC 2 cut(s) 10, 16
BstNI CCWGG 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 111
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 3, 22
Bsu15I ATCGAT 1 cut(s) 53
Bsu36I CCTNAGG 1 cut(s) 187
BsuTUI ATCGAT 1 cut(s) 53
BtsCI GGATG 1 cut(s) 64
Cac8I GCNNGC 2 cut(s) 21, 129
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 2 cut(s) 129, 131
Cfr13I GGNCC 1 cut(s) 191
ClaI ATCGAT 1 cut(s) 53
CviAII CATG 1 cut(s) 5
CviJI RGCY 4 cut(s) 13, 23, 41, 157
CviKI_1 RGCY 4 cut(s) 13, 23, 41, 157
DdeI CTNAG 1 cut(s) 187
DpnI GATC 2 cut(s) 52, 56
DpnII GATC 2 cut(s) 50, 54
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 27
Eco81I CCTNAGG 1 cut(s) 187
EcoNI CCTNNNNNAGG 1 cut(s) 186
EcoO109I RGGNCCY 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 111
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 1 cut(s) 8
FaiI YATR 2 cut(s) 6, 208
FatI CATG 1 cut(s) 4
Fnu4HI GCNGC 3 cut(s) 11, 14, 17
FokI GGATG 1 cut(s) 51
Fsp4HI GCNGC 3 cut(s) 11, 14, 17
GlaI GCGC 2 cut(s) 128, 130
GluI GCNGC 3 cut(s) 11, 14, 17
GsuI CTGGAG 1 cut(s) 62
HhaI GCGC 2 cut(s) 129, 131
Hin1II CATG 1 cut(s) 8
Hin6I GCGC 2 cut(s) 127, 129
HinP1I GCGC 2 cut(s) 127, 129
HphI GGTGA 2 cut(s) 23, 194
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 189
HpyAV CCTTC 1 cut(s) 204
HpyCH4V TGCA 4 cut(s) 4, 10, 19, 108
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 16
HpyF3I CTNAG 1 cut(s) 187
Hsp92II CATG 1 cut(s) 8
HspAI GCGC 2 cut(s) 127, 129
Kzo9I GATC 2 cut(s) 50, 54
LpnPI CCDG 6 cut(s) 92, 98, 125, 152, 171, 174
Lsp1109I GCAGC 2 cut(s) 3, 22
MalI GATC 2 cut(s) 52, 56
MboI GATC 2 cut(s) 50, 54
MboII GAAGA 1 cut(s) 88
MluCI AATT 1 cut(s) 165
MnlI CCTC 6 cut(s) 78, 86, 101, 104, 189, 196
Mph1103I ATGCAT 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 13
MspR9I CCNGG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 2 cut(s) 10, 16
NdeII GATC 2 cut(s) 50, 54
NlaIII CATG 1 cut(s) 8
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PauI GCGCGC 1 cut(s) 127
PkrI GCNGC 3 cut(s) 12, 15, 18
PpuMI RGGWCCY 1 cut(s) 191
Psp5II RGGWCCY 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspPI GGNCC 1 cut(s) 191
PspPPI RGGWCCY 1 cut(s) 191
PstNI CAGNNNCTG 1 cut(s) 16
PteI GCGCGC 1 cut(s) 127
PvuII CAGCTG 1 cut(s) 13
SatI GCNGC 3 cut(s) 11, 14, 17
Sau3AI GATC 2 cut(s) 50, 54
Sau96I GGNCC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 113
SetI ASST 7 cut(s) 15, 25, 43, 114, 188, 196, 207
SinI GGWCC 1 cut(s) 191
Sse9I AATT 1 cut(s) 165
StyD4I CCNGG 1 cut(s) 111
TaqI TCGA 2 cut(s) 53, 153
TasI AATT 1 cut(s) 165
TseI GCWGC 3 cut(s) 10, 13, 16
TspDTI ATGAA 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 191
XagI CCTNNNNNAGG 1 cut(s) 186
XapI RAATTY 1 cut(s) 165
XceI RCATGY 1 cut(s) 8
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.