pycom09g01870

QWRF motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0002875
Physical Location & Seq
Reverse (-)
1407100 .. 1407306
207 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g01870.1

Sequence Viewer

Length: 207 bp
ATGCATGTGCAGCTGCTGCAAGCTAAAAATCACCATTTAGCTTCAGACAGTATCTCAACACATCCTCGTCTCCCCCAGCAGGTTTTCCTCCTCTTCATTGTCTGCAACCTGGAAACTCTGCAGCGCGCCTATTTCCAGCAACAACCCATCGAGCCAGACAAAATTCCCACACTTCCTCCTACCTCAGGACCTTCTCATCACCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QWRF

Protein Analysis

69

Amino Acids

7.76

Weight (kDa)

7.01

Isoelectric Point (pI)

57.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 70
AccII CGCG 1 cut(s) 126
AcsI RAATTY 1 cut(s) 162
AcuI CTGAAG 1 cut(s) 27
AfiI CCNNNNNNNGG 2 cut(s) 79, 185
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 3 cut(s) 13, 23, 41
AluI AGCT 3 cut(s) 13, 23, 41
Alw26I GTCTC 1 cut(s) 74
AlwNI CAGNNNCTG 1 cut(s) 16
ApeKI GCWGC 4 cut(s) 10, 13, 16, 121
ApoI RAATTY 1 cut(s) 162
AspLEI GCGC 2 cut(s) 126, 128
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 23, 191
AvaII GGWCC 1 cut(s) 188
AxyI CCTNAGG 1 cut(s) 184
BbvI GCAGC 3 cut(s) 3, 22, 133
BccI CCATC 1 cut(s) 155
BciT130I CCWGG 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 74
BfmI CTRYAG 1 cut(s) 119
BfuAI ACCTGC 1 cut(s) 70
BisI GCNGC 4 cut(s) 11, 14, 17, 122
BlsI GCNGC 4 cut(s) 12, 15, 18, 123
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmrFI CCNGG 1 cut(s) 110
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 185
Bse21I CCTNAGG 1 cut(s) 184
BseBI CCWGG 1 cut(s) 110
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 2 cut(s) 79, 185
BseMII CTCAG 1 cut(s) 198
BsePI GCGCGC 1 cut(s) 124
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 3 cut(s) 3, 22, 133
BseYI CCCAGC 1 cut(s) 75
BsgI GTGCAG 1 cut(s) 29
Bsh1236I CGCG 1 cut(s) 126
BslI CCNNNNNNNGG 2 cut(s) 79, 185
BsmAI GTCTC 1 cut(s) 74
BsmBI CGTCTC 1 cut(s) 74
BspCNI CTCAG 1 cut(s) 197
BspFNI CGCG 1 cut(s) 126
BspMAI CTGCAG 1 cut(s) 123
BspMI ACCTGC 1 cut(s) 70
BssHII GCGCGC 1 cut(s) 124
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 1 cut(s) 50
Bst6I CTCTTC 1 cut(s) 98
BstAPI GCANNNNNTGC 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 21, 126
BstDEI CTNAG 1 cut(s) 184
BstENI CCTNNNNNAGG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 61
BstFNI CGCG 1 cut(s) 126
BstHHI GCGC 2 cut(s) 126, 128
BstMAI GTCTC 1 cut(s) 74
BstMWI GCNNNNNNNGC 2 cut(s) 10, 16
BstNI CCWGG 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 108
BstSFI CTRYAG 1 cut(s) 119
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 3 cut(s) 3, 22, 133
Bsu36I CCTNAGG 1 cut(s) 184
BtsCI GGATG 1 cut(s) 61
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 2 cut(s) 21, 126
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 2 cut(s) 126, 128
Cfr13I GGNCC 1 cut(s) 188
CviAII CATG 1 cut(s) 5
CviJI RGCY 4 cut(s) 13, 23, 41, 154
CviKI_1 RGCY 4 cut(s) 13, 23, 41, 154
DdeI CTNAG 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 188
Eco57I CTGAAG 1 cut(s) 27
Eco81I CCTNAGG 1 cut(s) 184
EcoNI CCTNNNNNAGG 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 74
FaeI CATG 1 cut(s) 8
FaiI YATR 1 cut(s) 6
FatI CATG 1 cut(s) 4
Fnu4HI GCNGC 4 cut(s) 11, 14, 17, 122
FokI GGATG 1 cut(s) 48
Fsp4HI GCNGC 4 cut(s) 11, 14, 17, 122
GlaI GCGC 2 cut(s) 125, 127
GluI GCNGC 4 cut(s) 11, 14, 17, 122
GsaI CCCAGC 1 cut(s) 79
HhaI GCGC 2 cut(s) 126, 128
Hin1II CATG 1 cut(s) 8
Hin6I GCGC 2 cut(s) 124, 126
HinP1I GCGC 2 cut(s) 124, 126
HphI GGTGA 2 cut(s) 23, 191
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 186
HpyAV CCTTC 1 cut(s) 201
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4V TGCA 5 cut(s) 4, 10, 19, 105, 121
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 16
HpyF3I CTNAG 1 cut(s) 184
Hsp92II CATG 1 cut(s) 8
HspAI GCGC 2 cut(s) 124, 126
LpnPI CCDG 7 cut(s) 65, 89, 95, 122, 149, 168, 171
Lsp1109I GCAGC 3 cut(s) 3, 22, 133
MboII GAAGA 1 cut(s) 85
MluCI AATT 1 cut(s) 162
MnlI CCTC 5 cut(s) 75, 98, 101, 186, 193
Mph1103I ATGCAT 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 13
MspR9I CCNGG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 110
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 10, 16
NlaIII CATG 1 cut(s) 8
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PauI GCGCGC 1 cut(s) 124
PkrI GCNGC 4 cut(s) 12, 15, 18, 123
PpuMI RGGWCCY 1 cut(s) 188
Psp5II RGGWCCY 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 108
PspFI CCCAGC 1 cut(s) 75
PspGI CCWGG 1 cut(s) 108
PspPI GGNCC 1 cut(s) 188
PspPPI RGGWCCY 1 cut(s) 188
PstI CTGCAG 1 cut(s) 123
PstNI CAGNNNCTG 1 cut(s) 16
PteI GCGCGC 1 cut(s) 124
PvuII CAGCTG 1 cut(s) 13
SatI GCNGC 4 cut(s) 11, 14, 17, 122
Sau96I GGNCC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 110
SetI ASST 8 cut(s) 15, 25, 43, 84, 111, 185, 193, 204
SfcI CTRYAG 1 cut(s) 119
SinI GGWCC 1 cut(s) 188
Sse9I AATT 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 50
TaqI TCGA 1 cut(s) 150
TasI AATT 1 cut(s) 162
TseI GCWGC 4 cut(s) 10, 13, 16, 121
TspDTI ATGAA 1 cut(s) 85
VpaK11BI GGWCC 1 cut(s) 188
XagI CCTNNNNNAGG 1 cut(s) 183
XapI RAATTY 1 cut(s) 162
XceI RCATGY 1 cut(s) 8
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.