pycom17g05460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0002875
Physical Location & Seq
Reverse (-)
3868909 .. 3869196
288 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g05460.1

Sequence Viewer

Length: 288 bp
ATGCATGTGCAGCTGCTGCAAGCAAAAACAACTTTTAGCTTCAGACAGGATCTCAACACATCCTCGTCTCCTCCAGCAGGTTTTCCTCCTCTTCATTGTCTGAAACCTGGAAACTCGTCAGCGCGCCTATTTCCAGCAACAACCCATCGAGCCAGACAAAATTCCCACACTTCCTCCTACCTCAGGACCTTCTCATCACCTGTGAATCCCATAGCTCCACCTGCTGCAAAACCCCTGCAACACTTGAGACTAAACATCACCAGGAGAAGTGTTGCTTCGAGTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.4

Weight (kDa)

12.0

Isoelectric Point (pI)

89.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 229
Acc36I ACCTGC 2 cut(s) 68, 229
AccII CGCG 1 cut(s) 124
AclWI GGATC 1 cut(s) 57
AcsI RAATTY 1 cut(s) 160
AcuI CTGAAG 1 cut(s) 25
AfaI GTAC 1 cut(s) 283
AfiI CCNNNNNNNGG 2 cut(s) 77, 183
AjnI CCWGG 2 cut(s) 106, 260
AluBI AGCT 3 cut(s) 13, 39, 215
AluI AGCT 3 cut(s) 13, 39, 215
Alw26I GTCTC 2 cut(s) 72, 241
AlwI GGATC 1 cut(s) 57
AlwNI CAGNNNCTG 1 cut(s) 16
ApeKI GCWGC 4 cut(s) 10, 13, 16, 224
ApoI RAATTY 1 cut(s) 160
AspLEI GCGC 2 cut(s) 124, 126
AspS9I GGNCC 1 cut(s) 186
AsuHPI GGTGA 2 cut(s) 189, 250
AvaII GGWCC 1 cut(s) 186
AxyI CCTNAGG 1 cut(s) 182
BbvI GCAGC 3 cut(s) 3, 22, 211
BccI CCATC 1 cut(s) 153
BciT130I CCWGG 2 cut(s) 108, 262
BcoDI GTCTC 2 cut(s) 72, 241
BfaI CTAG 1 cut(s) 286
BfuAI ACCTGC 2 cut(s) 68, 229
BisI GCNGC 4 cut(s) 11, 14, 17, 225
BlsI GCNGC 4 cut(s) 12, 15, 18, 226
Bme1390I CCNGG 2 cut(s) 108, 262
Bme18I GGWCC 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 186
BmrFI CCNGG 2 cut(s) 108, 262
BpmI CTGGAG 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 265
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 183
Bse21I CCTNAGG 1 cut(s) 182
BseBI CCWGG 2 cut(s) 108, 262
BseGI GGATG 1 cut(s) 59
BseLI CCNNNNNNNGG 2 cut(s) 77, 183
BseMII CTCAG 1 cut(s) 196
BsePI GCGCGC 1 cut(s) 122
BseRI GAGGAG 2 cut(s) 60, 78
BseXI GCAGC 3 cut(s) 3, 22, 211
BsgI GTGCAG 1 cut(s) 29
Bsh1236I CGCG 1 cut(s) 124
BslI CCNNNNNNNGG 2 cut(s) 77, 183
BsmAI GTCTC 2 cut(s) 72, 241
BsmBI CGTCTC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 49
BspCNI CTCAG 1 cut(s) 195
BspFNI CGCG 1 cut(s) 124
BspMI ACCTGC 2 cut(s) 68, 229
BspPI GGATC 1 cut(s) 57
BssHII GCGCGC 1 cut(s) 122
BssMI GATC 1 cut(s) 49
Bst2UI CCWGG 2 cut(s) 108, 262
Bst6I CTCTTC 1 cut(s) 96
BstAPI GCANNNNNTGC 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 21, 124
BstDEI CTNAG 1 cut(s) 182
BstENI CCTNNNNNAGG 2 cut(s) 75, 181
BstF5I GGATG 1 cut(s) 59
BstFNI CGCG 1 cut(s) 124
BstHHI GCGC 2 cut(s) 124, 126
BstKTI GATC 1 cut(s) 52
BstMAI GTCTC 2 cut(s) 72, 241
BstMBI GATC 1 cut(s) 49
BstMWI GCNNNNNNNGC 3 cut(s) 10, 16, 221
BstNI CCWGG 2 cut(s) 108, 262
BstNSI RCATGY 1 cut(s) 8
BstSCI CCNGG 2 cut(s) 106, 260
BstUI CGCG 1 cut(s) 124
BstV1I GCAGC 3 cut(s) 3, 22, 211
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
Bsu36I CCTNAGG 1 cut(s) 182
BtsCI GGATG 1 cut(s) 59
BveI ACCTGC 2 cut(s) 68, 229
Cac8I GCNNGC 2 cut(s) 21, 124
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 2 cut(s) 124, 126
Cfr13I GGNCC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 282
CviAII CATG 1 cut(s) 5
CviJI RGCY 4 cut(s) 13, 39, 152, 215
CviKI_1 RGCY 4 cut(s) 13, 39, 152, 215
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 1 cut(s) 182
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 186
Eco57I CTGAAG 1 cut(s) 25
Eco81I CCTNAGG 1 cut(s) 182
EcoNI CCTNNNNNAGG 2 cut(s) 75, 181
EcoO109I RGGNCCY 1 cut(s) 186
EcoRII CCWGG 2 cut(s) 106, 260
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 72
FaeI CATG 1 cut(s) 8
FaiI YATR 2 cut(s) 6, 212
FalI AAGNNNNNCTT 1 cut(s) 259
FatI CATG 1 cut(s) 4
Fnu4HI GCNGC 4 cut(s) 11, 14, 17, 225
FokI GGATG 1 cut(s) 46
Fsp4HI GCNGC 4 cut(s) 11, 14, 17, 225
FspBI CTAG 1 cut(s) 286
GlaI GCGC 2 cut(s) 123, 125
GluI GCNGC 4 cut(s) 11, 14, 17, 225
GsuI CTGGAG 1 cut(s) 57
HhaI GCGC 2 cut(s) 124, 126
Hin1II CATG 1 cut(s) 8
Hin6I GCGC 2 cut(s) 122, 124
HinP1I GCGC 2 cut(s) 122, 124
HinfI GANTC 1 cut(s) 205
HphI GGTGA 2 cut(s) 189, 250
Hpy188I TCNGA 2 cut(s) 44, 102
Hpy188III TCNNGA 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 199
HpyCH4V TGCA 5 cut(s) 4, 10, 19, 227, 238
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 16, 221
HpyF3I CTNAG 1 cut(s) 182
Hsp92II CATG 1 cut(s) 8
HspAI GCGC 2 cut(s) 122, 124
Kzo9I GATC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 220
Lsp1109I GCAGC 3 cut(s) 3, 22, 211
MaeI CTAG 1 cut(s) 286
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MboII GAAGA 1 cut(s) 83
MflI RGATCY 1 cut(s) 49
MluCI AATT 1 cut(s) 160
MnlI CCTC 6 cut(s) 73, 81, 96, 99, 184, 191
Mph1103I ATGCAT 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 13
MspR9I CCNGG 2 cut(s) 108, 262
MvaI CCWGG 2 cut(s) 108, 262
MvnI CGCG 1 cut(s) 124
MwoI GCNNNNNNNGC 3 cut(s) 10, 16, 221
NdeII GATC 1 cut(s) 49
NlaIII CATG 1 cut(s) 8
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PaqCI CACCTGC 1 cut(s) 229
PauI GCGCGC 1 cut(s) 122
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 4 cut(s) 12, 15, 18, 226
PpuMI RGGWCCY 1 cut(s) 186
Psp5II RGGWCCY 1 cut(s) 186
Psp6I CCWGG 2 cut(s) 106, 260
PspGI CCWGG 2 cut(s) 106, 260
PspPI GGNCC 1 cut(s) 186
PspPPI RGGWCCY 1 cut(s) 186
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 1 cut(s) 49
PteI GCGCGC 1 cut(s) 122
PvuII CAGCTG 1 cut(s) 13
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
SatI GCNGC 4 cut(s) 11, 14, 17, 225
Sau3AI GATC 1 cut(s) 49
Sau96I GGNCC 1 cut(s) 186
ScrFI CCNGG 2 cut(s) 108, 262
SinI GGWCC 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 1 cut(s) 160
SspMI CTAG 1 cut(s) 286
StyD4I CCNGG 2 cut(s) 106, 260
TaqI TCGA 2 cut(s) 148, 278
TasI AATT 1 cut(s) 160
TfiI GAWTC 1 cut(s) 205
TseI GCWGC 4 cut(s) 10, 13, 16, 224
TspDTI ATGAA 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 186
XagI CCTNNNNNAGG 2 cut(s) 75, 181
XapI RAATTY 1 cut(s) 160
XceI RCATGY 1 cut(s) 8
XspI CTAG 1 cut(s) 286
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.