pycom15g17640

QWRF motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0002875
Physical Location & Seq
Reverse (-)
12536991 .. 12537197
207 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g17640.1

Sequence Viewer

Length: 207 bp
ATGCATGTGCAGCTGCTGCAAGCTAAAAATCACCATTTAGCTTCAGACAGGATCTCAACACATCCTCGTCTCCTCCAGCAGGTTTTCCTCCTCTTCATTGTCTGCAACCTAGAAACTCGTCAGCGCGCCTATTTCCAGCAACAACCCATCGAGCCAGACAAAATTCCCACACTTCCTCCTACCTCAGGACCTTCTCATCACCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QWRF

Protein Analysis

69

Amino Acids

7.89

Weight (kDa)

9.19

Isoelectric Point (pI)

50.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 70
AccII CGCG 1 cut(s) 126
AclWI GGATC 1 cut(s) 59
AcsI RAATTY 1 cut(s) 162
AcuI CTGAAG 1 cut(s) 27
AfiI CCNNNNNNNGG 2 cut(s) 79, 185
AluBI AGCT 3 cut(s) 13, 23, 41
AluI AGCT 3 cut(s) 13, 23, 41
Alw26I GTCTC 1 cut(s) 74
AlwI GGATC 1 cut(s) 59
AlwNI CAGNNNCTG 1 cut(s) 16
ApeKI GCWGC 3 cut(s) 10, 13, 16
ApoI RAATTY 1 cut(s) 162
AspLEI GCGC 2 cut(s) 126, 128
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 23, 191
AvaII GGWCC 1 cut(s) 188
AxyI CCTNAGG 1 cut(s) 184
BbvI GCAGC 2 cut(s) 3, 22
BccI CCATC 1 cut(s) 155
BcoDI GTCTC 1 cut(s) 74
BfaI CTAG 1 cut(s) 110
BfuAI ACCTGC 1 cut(s) 70
BisI GCNGC 3 cut(s) 11, 14, 17
BlsI GCNGC 3 cut(s) 12, 15, 18
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BpmI CTGGAG 1 cut(s) 59
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 185
Bse21I CCTNAGG 1 cut(s) 184
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 2 cut(s) 79, 185
BseMII CTCAG 1 cut(s) 198
BsePI GCGCGC 1 cut(s) 124
BseRI GAGGAG 2 cut(s) 62, 80
BseXI GCAGC 2 cut(s) 3, 22
BsgI GTGCAG 1 cut(s) 29
Bsh1236I CGCG 1 cut(s) 126
BslI CCNNNNNNNGG 2 cut(s) 79, 185
BsmAI GTCTC 1 cut(s) 74
BsmBI CGTCTC 1 cut(s) 74
Bsp143I GATC 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 197
BspFNI CGCG 1 cut(s) 126
BspMI ACCTGC 1 cut(s) 70
BspPI GGATC 1 cut(s) 59
BssHII GCGCGC 1 cut(s) 124
BssMI GATC 1 cut(s) 51
Bst6I CTCTTC 1 cut(s) 98
BstAPI GCANNNNNTGC 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 21, 126
BstDEI CTNAG 1 cut(s) 184
BstENI CCTNNNNNAGG 2 cut(s) 77, 183
BstF5I GGATG 1 cut(s) 61
BstFNI CGCG 1 cut(s) 126
BstHHI GCGC 2 cut(s) 126, 128
BstKTI GATC 1 cut(s) 54
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 1 cut(s) 51
BstMWI GCNNNNNNNGC 2 cut(s) 10, 16
BstNSI RCATGY 1 cut(s) 8
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 3, 22
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
Bsu36I CCTNAGG 1 cut(s) 184
BtsCI GGATG 1 cut(s) 61
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 2 cut(s) 21, 126
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 2 cut(s) 126, 128
Cfr13I GGNCC 1 cut(s) 188
CviAII CATG 1 cut(s) 5
CviJI RGCY 4 cut(s) 13, 23, 41, 154
CviKI_1 RGCY 4 cut(s) 13, 23, 41, 154
DdeI CTNAG 1 cut(s) 184
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 188
Eco57I CTGAAG 1 cut(s) 27
Eco81I CCTNAGG 1 cut(s) 184
EcoNI CCTNNNNNAGG 2 cut(s) 77, 183
EcoO109I RGGNCCY 1 cut(s) 188
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 74
FaeI CATG 1 cut(s) 8
FaiI YATR 1 cut(s) 6
FatI CATG 1 cut(s) 4
Fnu4HI GCNGC 3 cut(s) 11, 14, 17
FokI GGATG 1 cut(s) 48
Fsp4HI GCNGC 3 cut(s) 11, 14, 17
FspBI CTAG 1 cut(s) 110
GlaI GCGC 2 cut(s) 125, 127
GluI GCNGC 3 cut(s) 11, 14, 17
GsuI CTGGAG 1 cut(s) 59
HhaI GCGC 2 cut(s) 126, 128
Hin1II CATG 1 cut(s) 8
Hin6I GCGC 2 cut(s) 124, 126
HinP1I GCGC 2 cut(s) 124, 126
HphI GGTGA 2 cut(s) 23, 191
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 186
HpyAV CCTTC 1 cut(s) 201
HpyCH4V TGCA 4 cut(s) 4, 10, 19, 105
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 16
HpyF3I CTNAG 1 cut(s) 184
Hsp92II CATG 1 cut(s) 8
HspAI GCGC 2 cut(s) 124, 126
Kzo9I GATC 1 cut(s) 51
LpnPI CCDG 6 cut(s) 34, 65, 89, 149, 168, 171
Lsp1109I GCAGC 2 cut(s) 3, 22
MaeI CTAG 1 cut(s) 110
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 1 cut(s) 85
MflI RGATCY 1 cut(s) 51
MluCI AATT 1 cut(s) 162
MnlI CCTC 6 cut(s) 75, 83, 98, 101, 186, 193
Mph1103I ATGCAT 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 13
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 10, 16
NdeII GATC 1 cut(s) 51
NlaIII CATG 1 cut(s) 8
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PauI GCGCGC 1 cut(s) 124
PkrI GCNGC 3 cut(s) 12, 15, 18
PpuMI RGGWCCY 1 cut(s) 188
Psp5II RGGWCCY 1 cut(s) 188
PspPI GGNCC 1 cut(s) 188
PspPPI RGGWCCY 1 cut(s) 188
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 1 cut(s) 51
PteI GCGCGC 1 cut(s) 124
PvuII CAGCTG 1 cut(s) 13
SatI GCNGC 3 cut(s) 11, 14, 17
Sau3AI GATC 1 cut(s) 51
Sau96I GGNCC 1 cut(s) 188
SetI ASST 8 cut(s) 15, 25, 43, 84, 111, 185, 193, 204
SinI GGWCC 1 cut(s) 188
Sse9I AATT 1 cut(s) 162
SspMI CTAG 1 cut(s) 110
TaqI TCGA 1 cut(s) 150
TasI AATT 1 cut(s) 162
TseI GCWGC 3 cut(s) 10, 13, 16
TspDTI ATGAA 1 cut(s) 85
VpaK11BI GGWCC 1 cut(s) 188
XagI CCTNNNNNAGG 2 cut(s) 77, 183
XapI RAATTY 1 cut(s) 162
XceI RCATGY 1 cut(s) 8
XspI CTAG 1 cut(s) 110
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.