Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006333

Physical Location & Seq

Genomic Coordinates Forward (+)

14610448 .. 14612576

Gene Structure 2129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g11140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGCAAACGCAGCAGTGACTGTGATGCTCATGCTCATCATCGCCGTCGTCGCTGCAACCACCGAAGGAGCTCAAAGCACCTCCACACAACCCAAGTGGGCCAACAAGCTCAAGAAGAGGAAGAACATGACGTCGTCAGAGACTGTGACCAACCTCCACTTCTACTTCCACGACACAGTCAGTGGGAAGAACCCAAGTGCCGTCCGTATAGCCCAAGCCACAGACACCAACAAGTCCCTCACCCTTTTCGGAGCTCTGCTCATGGTAGATGACCCGCTAACCGAAACGCCTGACCCGAATTCCAAGCTCGTGGGCCGGGCGCAGGGGATGTACGGGTCATCCGGACAGCAAGAGTTTGGGCTTACTATGGCCATGTGCTTTGCGTTCTGTGATGGCATTTACGATGGGAGCTCGATTAGTATTTTCGGTAAGAACCCGGCTCTGAATCTGGTTCGGGAGATGCCGGTTGTGGCCGGAACTGGCGTTTTCCGGTTCGCCCGGGGTTATGCAATTGCCCGGACGCATTGGTTTAATATTATGGGCGATGCAATTGTTGAATACAATGTCACTTTCCTCGCACAACAAAGCAAAATAGTTAAAAACATGGAACGCGGTAGTTTGGTTCTTCGATTGGCCTTGACTCTCCTAACCGTCGCGGCCACACCAACACATTGCAGCTACCATTCCCACACACTTCCAAATGTCCATCACGAAGAAAAGGTCACGCGCCTCCACTTCTACCTCTTCGACATCATCAGCGGCGACAAACCTAGTGCCGTAGAAGTCGCACGTTCAAACAGCACGAAGAATGACAGTTCTCCCACGCCGTTCGGCAGCGTGTGGGCCATCGACGACCCTCTACGAGAGGGCCCTGAGGCCACTTCCAAAGTTATTGGGAACGCTCAAGGGCTCTACGTGTCGTCAGTCCAGGACGAGACCAAGCTGGGGCTTGTAATGTACGTTGATTTCGGTTTTACTGAGGGTAAGTTTAAGGGGAGCTCATTCAGCGTGTTTTCGAGAAATCCGGTGACAGAGACGAATCGGGAGTTGGCCGTTGTGGGAGGGAGAGGGAGGTTTAGAATGGCGAGAGGGTTTGCGAAGCTGAAAACTAGTTATTTAAATGTTACCAATGGTGATGCCATTATTGAGTATAAGGTCACTCTCATCCACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

392

Amino Acids

42.73

Weight (kDa)

9.06

Isoelectric Point (pI)

28.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21110 AT4G38700
fragaria_vesca	FvH4_2g01700
malus_domestica	MD05G1117400.v1.1
prunus_persica	Prupe.8G162000_v2.0.a1
pyrus_communis	pycom05g11140
rosa_chinensis	RchiOBHm_Chr6g0244591 RchiOBHm_Chr6g0244601
rosa_laevigata	RLG00000015341 RLG00000015342
rosa_multiflora	Rmu_co8333065.1_g000001 Rmu_sc0011292.1_g000011
rosa_roxburghii	Rroxscaffold_7G00215650 Rroxscaffold_7G00215660
rosa_rugosa	Rorug05G0509700 Rorug05G0509800.1
rosa_samantha	Rh6AG025500 Rh6AG025600 Rh6BG020300 Rh6BG020400 Rh6CG018600 Rh6CG018700 Rh6DG019700 Rh6DG019800
rosa_wichuraiana	Rw6G000030 Rw6G002080 Rw6G002090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	134
AccII	CGCG	3 cut(s)	612, 656, 727
AccIII	TCCGGA	1 cut(s)	341
AciI	CCGC	4 cut(s)	275, 612, 656, 759
AcoI	YGGCCR	4 cut(s)	369, 471, 657, 1050
AcsI	RAATTY	1 cut(s)	298
AcyI	GRCGYC	1 cut(s)	131
AfaI	GTAC	2 cut(s)	332, 959
AfiI	CCNNNNNNNGG	2 cut(s)	322, 945
AflIII	ACRYGT	1 cut(s)	915
AgsI	TTSAA	2 cut(s)	557, 795
AhlI	ACTAGT	1 cut(s)	1109
AjnI	CCWGG	1 cut(s)	927
AjuI	GAANNNNNNNTTGG	4 cut(s)	143, 175, 1031, 1063
AluBI	AGCT	9 cut(s)	71, 109, 254, 307, 411, 678, 943, 999, 1102
AluI	AGCT	9 cut(s)	71, 109, 254, 307, 411, 678, 943, 999, 1102
Alw21I	GWGCWC	4 cut(s)	73, 256, 413, 1001
Alw26I	GTCTC	3 cut(s)	134, 929, 1028
AlwNI	CAGNNNCTG	2 cut(s)	20, 143
Ama87I	CYCGRG	1 cut(s)	498
Aor13HI	TCCGGA	1 cut(s)	341
ApaI	GGGCCC	1 cut(s)	872
ApeKI	GCWGC	4 cut(s)	11, 53, 675, 834
ApoI	RAATTY	1 cut(s)	298
ArsI	GACNNNNNNTTYG	2 cut(s)	705, 737
AspLEI	GCGC	2 cut(s)	322, 729
AspS9I	GGNCC	5 cut(s)	99, 313, 843, 868, 869
AsuC2I	CCSGG	5 cut(s)	317, 437, 499, 500, 517
AsuHPI	GGTGA	3 cut(s)	232, 1039, 1145
AvaI	CYCGRG	1 cut(s)	498
AxyI	CCTNAGG	1 cut(s)	873
BaeGI	GKGCMC	1 cut(s)	872
BalI	TGGCCA	1 cut(s)	371
BanII	GRGCYC	6 cut(s)	73, 256, 413, 872, 912, 1001
BauI	CACGAG	1 cut(s)	308
Bbv12I	GWGCWC	4 cut(s)	73, 256, 413, 1001
BbvI	GCAGC	4 cut(s)	23, 40, 687, 846
BccI	CCATC	4 cut(s)	386, 398, 714, 854
BceAI	ACGGC	5 cut(s)	29, 185, 761, 811, 1037
BciT130I	CCWGG	1 cut(s)	929
BcnI	CCSGG	5 cut(s)	317, 437, 499, 500, 517
BcoDI	GTCTC	3 cut(s)	134, 929, 1028
BcuI	ACTAGT	1 cut(s)	1109
BfaI	CTAG	2 cut(s)	771, 1110
BisI	GCNGC	6 cut(s)	12, 54, 657, 676, 760, 835
BlsI	GCNGC	6 cut(s)	13, 55, 658, 677, 761, 836
Bme1390I	CCNGG	6 cut(s)	317, 437, 499, 500, 517, 929
BmeT110I	CYCGRG	1 cut(s)	498
BmgT120I	GGNCC	5 cut(s)	99, 313, 843, 868, 869
BmiI	GGNNCC	1 cut(s)	870
BmrFI	CCNGG	6 cut(s)	317, 437, 499, 500, 517, 929
BmsI	GCATC	4 cut(s)	15, 450, 535, 1126
BplI	GAGNNNNNCTC	2 cut(s)	243, 275
BpuEI	CTTGAG	2 cut(s)	95, 888
BpuMI	CCSGG	5 cut(s)	317, 437, 499, 500, 517
BsaAI	YACGTR	1 cut(s)	916
BsaHI	GRCGYC	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	929
BsaJI	CCNNGG	2 cut(s)	498, 499
BsaWI	WCCGGW	3 cut(s)	341, 489, 1024
Bsc4I	CCNNNNNNNGG	2 cut(s)	322, 945
Bse118I	RCCGGY	1 cut(s)	463
Bse1I	ACTGG	1 cut(s)	484
Bse21I	CCTNAGG	1 cut(s)	873
Bse3DI	GCAATG	1 cut(s)	670
BseAI	TCCGGA	1 cut(s)	341
BseBI	CCWGG	1 cut(s)	929
BseDI	CCNNGG	2 cut(s)	498, 499
BseGI	GGATG	3 cut(s)	333, 338, 1164
BseLI	CCNNNNNNNGG	2 cut(s)	322, 945
BseMI	GCAATG	1 cut(s)	670
BseMII	CTCAG	2 cut(s)	864, 969
BseNI	ACTGG	1 cut(s)	484
BseSI	GKGCMC	1 cut(s)	872
BseXI	GCAGC	4 cut(s)	23, 40, 687, 846
BseYI	CCCAGC	1 cut(s)	943
Bsh1236I	CGCG	3 cut(s)	612, 656, 727
BsiHKAI	GWGCWC	4 cut(s)	73, 256, 413, 1001
BsiHKCI	CYCGRG	1 cut(s)	498
BsiSI	CCGG	9 cut(s)	316, 342, 437, 464, 474, 490, 499, 517, 1025
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	2 cut(s)	322, 945
BsmAI	GTCTC	3 cut(s)	134, 929, 1028
BsmBI	CGTCTC	1 cut(s)	1028
BsmFI	GGGAC	1 cut(s)	220
Bso31I	GGTCTC	1 cut(s)	929
BsoBI	CYCGRG	1 cut(s)	498
Bsp120I	GGGCCC	1 cut(s)	868
Bsp1286I	GDGCHC	6 cut(s)	73, 256, 413, 872, 912, 1001
Bsp13I	TCCGGA	1 cut(s)	341
BspACI	CCGC	4 cut(s)	275, 612, 656, 759
BspCNI	CTCAG	2 cut(s)	865, 970
BspEI	TCCGGA	1 cut(s)	341
BspFNI	CGCG	3 cut(s)	612, 656, 727
BspLI	GGNNCC	1 cut(s)	870
BspTNI	GGTCTC	1 cut(s)	929
BsrDI	GCAATG	1 cut(s)	670
BsrFI	RCCGGY	1 cut(s)	463
BsrI	ACTGG	1 cut(s)	484
BssAI	RCCGGY	1 cut(s)	463
BssECI	CCNNGG	2 cut(s)	498, 499
BssNI	GRCGYC	1 cut(s)	131
BssSI	CACGAG	1 cut(s)	308
Bst2BI	CACGAG	1 cut(s)	308
Bst2UI	CCWGG	1 cut(s)	929
Bst4CI	ACNGT	5 cut(s)	22, 145, 178, 652, 815
Bst6I	CTCTTC	2 cut(s)	110, 749
BstACI	GRCGYC	1 cut(s)	131
BstBAI	YACGTR	1 cut(s)	916
BstDEI	CTNAG	2 cut(s)	873, 978
BstF5I	GGATG	3 cut(s)	333, 338, 1164
BstFNI	CGCG	3 cut(s)	612, 656, 727
BstHHI	GCGC	2 cut(s)	322, 729
BstMAI	GTCTC	3 cut(s)	134, 929, 1028
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 50, 1005
BstNI	CCWGG	1 cut(s)	929
BstSCI	CCNGG	6 cut(s)	315, 435, 497, 498, 515, 927
BstSLI	GKGCMC	1 cut(s)	872
BstUI	CGCG	3 cut(s)	612, 656, 727
BstV1I	GCAGC	4 cut(s)	23, 40, 687, 846
BstXI	CCANNNNNNTGG	1 cut(s)	310
Bsu36I	CCTNAGG	1 cut(s)	873
BtgZI	GCGATG	2 cut(s)	25, 558
BtsCI	GGATG	3 cut(s)	333, 338, 1164
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	2 cut(s)	21, 187
CaiI	CAGNNNCTG	2 cut(s)	20, 143
CfoI	GCGC	2 cut(s)	322, 729
Cfr10I	RCCGGY	1 cut(s)	463
Cfr13I	GGNCC	5 cut(s)	99, 313, 843, 868, 869
Cfr9I	CCCGGG	1 cut(s)	498
CseI	GACGC	1 cut(s)	529
Csp6I	GTAC	2 cut(s)	331, 958
CspCI	CAANNNNNGTGG	2 cut(s)	77, 112
CviAII	CATG	5 cut(s)	31, 127, 262, 373, 604
CviQI	GTAC	2 cut(s)	331, 958
DdeI	CTNAG	2 cut(s)	873, 978
DraI	TTTAAA	1 cut(s)	1119
EaeI	YGGCCR	4 cut(s)	369, 471, 657, 1050
Eam1104I	CTCTTC	2 cut(s)	110, 749
EarI	CTCTTC	2 cut(s)	110, 749
Ecl136II	GAGCTC	4 cut(s)	71, 254, 411, 999
Eco24I	GRGCYC	6 cut(s)	73, 256, 413, 872, 912, 1001
Eco31I	GGTCTC	1 cut(s)	929
Eco53kI	GAGCTC	4 cut(s)	71, 254, 411, 999
Eco81I	CCTNAGG	1 cut(s)	873
Eco88I	CYCGRG	1 cut(s)	498
EcoICRI	GAGCTC	4 cut(s)	71, 254, 411, 999
EcoO109I	RGGNCCY	2 cut(s)	868, 869
EcoRI	GAATTC	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	927
EcoT38I	GRGCYC	6 cut(s)	73, 256, 413, 872, 912, 1001
Esp3I	CGTCTC	1 cut(s)	1028
FaeI	CATG	5 cut(s)	34, 130, 265, 376, 607
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	5 cut(s)	30, 126, 261, 372, 603
FauI	CCCGC	1 cut(s)	282
Fnu4HI	GCNGC	6 cut(s)	12, 54, 657, 676, 760, 835
FokI	GGATG	3 cut(s)	325, 340, 1151
FriOI	GRGCYC	6 cut(s)	73, 256, 413, 872, 912, 1001
Fsp4HI	GCNGC	6 cut(s)	12, 54, 657, 676, 760, 835
FspBI	CTAG	2 cut(s)	771, 1110
GlaI	GCGC	2 cut(s)	321, 728
GluI	GCNGC	6 cut(s)	12, 54, 657, 676, 760, 835
GsaI	CCCAGC	1 cut(s)	947
HapII	CCGG	9 cut(s)	316, 342, 437, 464, 474, 490, 499, 517, 1025
HgaI	GACGC	1 cut(s)	529
HhaI	GCGC	2 cut(s)	322, 729
Hin1I	GRCGYC	1 cut(s)	131
Hin1II	CATG	5 cut(s)	34, 130, 265, 376, 607
Hin6I	GCGC	2 cut(s)	320, 727
HinP1I	GCGC	2 cut(s)	320, 727
HinfI	GANTC	3 cut(s)	445, 640, 1039
HpaII	CCGG	9 cut(s)	316, 342, 437, 464, 474, 490, 499, 517, 1025
HphI	GGTGA	3 cut(s)	232, 1039, 1145
Hpy188I	TCNGA	3 cut(s)	139, 251, 444
Hpy188III	TCNNGA	6 cut(s)	112, 342, 455, 710, 1017, 1043
Hpy99I	CGWCG	5 cut(s)	50, 53, 136, 656, 854
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	5 cut(s)	22, 145, 178, 652, 815
HpyCH4IV	ACGT	4 cut(s)	131, 790, 915, 960
HpyCH4V	TGCA	4 cut(s)	56, 509, 548, 675
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 50, 1005
HpyF3I	CTNAG	2 cut(s)	873, 978
HpySE526I	ACGT	4 cut(s)	131, 790, 915, 960
Hsp92I	GRCGYC	1 cut(s)	131
Hsp92II	CATG	5 cut(s)	34, 130, 265, 376, 607
HspAI	GCGC	2 cut(s)	320, 727
Kpn2I	TCCGGA	1 cut(s)	341
LmnI	GCTCC	4 cut(s)	68, 251, 408, 996
Lsp1109I	GCAGC	4 cut(s)	23, 40, 687, 846
LweI	GCATC	4 cut(s)	15, 450, 535, 1126
MaeI	CTAG	2 cut(s)	771, 1110
MaeII	ACGT	4 cut(s)	131, 790, 915, 960
MaeIII	GTNAC	7 cut(s)	16, 145, 565, 721, 1027, 1123, 1156
MboII	GAAGA	7 cut(s)	127, 133, 199, 617, 725, 736, 817
MfeI	CAATTG	2 cut(s)	510, 549
MhlI	GDGCHC	6 cut(s)	73, 256, 413, 872, 912, 1001
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	3 cut(s)	298, 510, 549
MluNI	TGGCCA	1 cut(s)	371
MlyI	GAGTC	1 cut(s)	634
Mox20I	TGGCCA	1 cut(s)	371
MroI	TCCGGA	1 cut(s)	341
MscI	TGGCCA	1 cut(s)	371
MseI	TTAA	4 cut(s)	531, 597, 990, 1118
Msp20I	TGGCCA	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	759
MspI	CCGG	9 cut(s)	316, 342, 437, 464, 474, 490, 499, 517, 1025
MspR9I	CCNGG	6 cut(s)	317, 437, 499, 500, 517, 929
MunI	CAATTG	2 cut(s)	510, 549
MvaI	CCWGG	1 cut(s)	929
MvnI	CGCG	3 cut(s)	612, 656, 727
MwoI	GCNNNNNNNGC	3 cut(s)	11, 50, 1005
NciI	CCSGG	5 cut(s)	317, 437, 499, 500, 517
NlaIII	CATG	5 cut(s)	34, 130, 265, 376, 607
NlaIV	GGNNCC	1 cut(s)	870
NmuCI	GTSAC	6 cut(s)	16, 145, 565, 721, 1027, 1156
PcsI	WCGNNNNNNNCGW	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	445, 1039
PflFI	GACNNNGTC	2 cut(s)	133, 176
PfoI	TCCNGGA	1 cut(s)	927
PkrI	GCNGC	6 cut(s)	13, 55, 658, 677, 761, 836
PleI	GAGTC	1 cut(s)	634
PpsI	GAGTC	1 cut(s)	634
Ppu21I	YACGTR	1 cut(s)	916
Psp124BI	GAGCTC	4 cut(s)	73, 256, 413, 1001
Psp6I	CCWGG	1 cut(s)	927
PspFI	CCCAGC	1 cut(s)	943
PspGI	CCWGG	1 cut(s)	927
PspN4I	GGNNCC	1 cut(s)	870
PspOMI	GGGCCC	1 cut(s)	868
PspPI	GGNCC	5 cut(s)	99, 313, 843, 868, 869
PstNI	CAGNNNCTG	2 cut(s)	20, 143
PsyI	GACNNNGTC	2 cut(s)	133, 176
RsaI	GTAC	2 cut(s)	332, 959
RsaNI	GTAC	2 cut(s)	331, 958
SacI	GAGCTC	4 cut(s)	73, 256, 413, 1001
SaqAI	TTAA	4 cut(s)	531, 597, 990, 1118
SatI	GCNGC	6 cut(s)	12, 54, 657, 676, 760, 835
Sau96I	GGNCC	5 cut(s)	99, 313, 843, 868, 869
SchI	GAGTC	1 cut(s)	634
ScrFI	CCNGG	6 cut(s)	317, 437, 499, 500, 517, 929
SduI	GDGCHC	6 cut(s)	73, 256, 413, 872, 912, 1001
SfaNI	GCATC	4 cut(s)	15, 450, 535, 1126
SmaI	CCCGGG	1 cut(s)	500
SmiI	ATTTAAAT	1 cut(s)	1119
SmlI	CTYRAG	2 cut(s)	110, 903
SmoI	CTYRAG	2 cut(s)	110, 903
SpeI	ACTAGT	1 cut(s)	1109
Sse9I	AATT	3 cut(s)	298, 510, 549
SsiI	CCGC	4 cut(s)	275, 612, 656, 759
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	2 cut(s)	771, 1110
SstI	GAGCTC	4 cut(s)	73, 256, 413, 1001
StyD4I	CCNGG	6 cut(s)	315, 435, 497, 498, 515, 927
SwaI	ATTTAAAT	1 cut(s)	1119
TaaI	ACNGT	5 cut(s)	22, 145, 178, 652, 815
TaiI	ACGT	4 cut(s)	134, 793, 918, 963
TaqI	TCGA	5 cut(s)	413, 628, 747, 849, 1016
TasI	AATT	3 cut(s)	298, 510, 549
TauI	GCSGC	2 cut(s)	659, 762
TfiI	GAWTC	2 cut(s)	445, 1039
Tru1I	TTAA	4 cut(s)	531, 597, 990, 1118
Tru9I	TTAA	4 cut(s)	531, 597, 990, 1118
TscAI	CASTG	2 cut(s)	21, 187
TseFI	GTSAC	6 cut(s)	16, 145, 565, 721, 1027, 1156
TseI	GCWGC	4 cut(s)	11, 53, 675, 834
Tsp45I	GTSAC	6 cut(s)	16, 145, 565, 721, 1027, 1156
TspGWI	ACGGA	1 cut(s)	194
TspMI	CCCGGG	1 cut(s)	498
TspRI	CASTG	2 cut(s)	21, 187
Tth111I	GACNNNGTC	2 cut(s)	133, 176
XapI	RAATTY	1 cut(s)	298
XmaI	CCCGGG	1 cut(s)	498
XspI	CTAG	2 cut(s)	771, 1110
ZraI	GACGTC	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.