Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008941

Physical Location & Seq

Genomic Coordinates Forward (+)

17416549 .. 17417523

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTCAACTTCCCAGAACGGAGAGCCGTCAAAGAAGGCGATAAAAACCCCAGGGGGTTCTGGTAGCTCTCAAGACAAAGCTAATTCGAGTGGCCAAACTGTTAAGTTTGCGCGAAGAACTTCAAGTGGACGGTATGTGAATCTGTCGAGAGAAGACCTTGATATGTCCGACGAATTATCTGGGGACTATATGAACTACACAGTTCATATTCCTCCCACCCCGGATAACCAGCCCATGGACACATCCGTGGCTGTCAAGGCAGAGGAGCAATATGTTTCCAATTCTTTGTTTACCGGAGGGTTCAATAGCGTGACTCGTGCGCATCTCATGGATAAGGTGATTGATTCAGAGGTGACTCATCCTCAGATGGCTGGAGCCAAAGGCTCTGCATGCATGATGCCTTCTTGTGATGGTAAGGTGATGAAGGATGAGAGAGGAGTTGATATAACCCCTTGTGATTGCCGGTATGAGTTCAAAATCTGTAGAGATTGTTACTTGGATGCACAGAACGACACTGGCCTTTGTCCGGGCTGCAAGGAGCAATACAAAGTAGGAGACGATTATGATGAGCCATCAGATTACAACAGTGGAACGCTGCAATTGCCTGGCCCTGATGGAAAAAGGGATAACATGTCTGTGATGAAGAGGAACCAAACGGGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008152 GO:0009846 GO:0009856 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019187 GO:0022414 GO:0032501 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0051704 GO:0051753 GO:0070085 GO:0071554 GO:0071669 GO:0097502

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-RING_4

Protein Analysis

222

Amino Acids

24.13

Weight (kDa)

4.97

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_4	PF14570	133 - 183	7.3e-14	RING/Ubox like zinc-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38190
fragaria_vesca	FvH4_2g17120
malus_domestica	MD05G1144100.v1.1 MD05G1144400.v1.1 MD10G1143700.v1.1
prunus_persica	Prupe.8G182500_v2.0.a1
pyrus_communis	pycom05g13840 pycom05g13860 pycom05g13910 pycom05g13940 pycom10g12370
rosa_chinensis	RchiOBHm_Chr6g0281541
rosa_laevigata	RLG00000012965
rosa_multiflora	Rmu_sc0012649.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187020
rosa_rugosa	Rorug06G0141300 Rorug06G0141400
rosa_samantha	Rh6AG253900 Rh6BG256800 Rh6CG256000 Rh6DG248000
rosa_wichuraiana	Rw6G022040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	321
AccB7I	CCANNNNNTGG	1 cut(s)	235
AccII	CGCG	1 cut(s)	112
AcoI	YGGCCR	1 cut(s)	91
AfiI	CCNNNNNNNGG	2 cut(s)	235, 526
AflIII	ACRYGT	1 cut(s)	630
AgsI	TTSAA	3 cut(s)	123, 304, 475
AjnI	CCWGG	2 cut(s)	49, 604
AleI	CACNNNNGTG	1 cut(s)	245
AluBI	AGCT	2 cut(s)	66, 80
AluI	AGCT	2 cut(s)	66, 80
Alw26I	GTCTC	1 cut(s)	549
AoxI	GGCC	3 cut(s)	91, 517, 607
ApeKI	GCWGC	2 cut(s)	531, 595
Asp700I	GAANNNNTTC	1 cut(s)	118
AspLEI	GCGC	2 cut(s)	112, 322
AspS9I	GGNCC	1 cut(s)	608
AsuC2I	CCSGG	2 cut(s)	221, 528
AsuHPI	GGTGA	3 cut(s)	349, 364, 430
BalI	TGGCCA	1 cut(s)	93
BauI	CACGAG	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	518, 582
BccI	CCATC	4 cut(s)	361, 404, 580, 608
BceAI	ACGGC	1 cut(s)	10
BciT130I	CCWGG	2 cut(s)	51, 606
BcnI	CCSGG	2 cut(s)	221, 528
BcoDI	GTCTC	1 cut(s)	549
BfmI	CTRYAG	1 cut(s)	481
BisI	GCNGC	2 cut(s)	532, 596
BlsI	GCNGC	2 cut(s)	533, 597
Bme1390I	CCNGG	4 cut(s)	51, 221, 528, 606
BmgT120I	GGNCC	1 cut(s)	608
BmiI	GGNNCC	2 cut(s)	376, 650
BmrFI	CCNGG	4 cut(s)	51, 221, 528, 606
BmsI	GCATC	3 cut(s)	331, 387, 490
BpiI	GAAGAC	1 cut(s)	159
BpmI	CTGGAG	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	54
BpuMI	CCSGG	2 cut(s)	221, 528
BsaJI	CCNNGG	5 cut(s)	49, 50, 219, 234, 246
BsaWI	WCCGGW	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 526
Bse118I	RCCGGY	1 cut(s)	462
Bse1I	ACTGG	1 cut(s)	520
BseBI	CCWGG	2 cut(s)	51, 606
BseDI	CCNNGG	5 cut(s)	49, 50, 219, 234, 246
BseGI	GGATG	4 cut(s)	242, 358, 433, 505
BseLI	CCNNNNNNNGG	2 cut(s)	235, 526
BseMII	CTCAG	1 cut(s)	377
BseNI	ACTGG	1 cut(s)	520
BseRI	GAGGAG	2 cut(s)	278, 450
BseXI	GCAGC	2 cut(s)	518, 582
Bsh1236I	CGCG	1 cut(s)	112
BshFI	GGCC	3 cut(s)	93, 519, 609
BsiSI	CCGG	4 cut(s)	221, 294, 463, 527
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	235, 526
BsmAI	GTCTC	1 cut(s)	549
BsmBI	CGTCTC	1 cut(s)	549
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	3 cut(s)	93, 519, 609
Bsp19I	CCATGG	1 cut(s)	234
BspANI	GGCC	3 cut(s)	93, 519, 609
BspCNI	CTCAG	1 cut(s)	376
BspFNI	CGCG	1 cut(s)	112
BspLI	GGNNCC	2 cut(s)	376, 650
BsrFI	RCCGGY	1 cut(s)	462
BsrI	ACTGG	1 cut(s)	520
BssAI	RCCGGY	1 cut(s)	462
BssECI	CCNNGG	5 cut(s)	49, 50, 219, 234, 246
BssSI	CACGAG	1 cut(s)	315
BssT1I	CCWWGG	1 cut(s)	234
Bst2BI	CACGAG	1 cut(s)	315
Bst2UI	CCWGG	2 cut(s)	51, 606
Bst4CI	ACNGT	4 cut(s)	100, 132, 202, 587
Bst6I	CTCTTC	1 cut(s)	638
BstC8I	GCNNGC	1 cut(s)	391
BstDEI	CTNAG	1 cut(s)	363
BstDSI	CCRYGG	2 cut(s)	234, 246
BstF5I	GGATG	4 cut(s)	242, 358, 433, 505
BstFNI	CGCG	1 cut(s)	112
BstHHI	GCGC	2 cut(s)	112, 322
BstMAI	GTCTC	1 cut(s)	549
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 390, 601
BstNI	CCWGG	2 cut(s)	51, 606
BstNSI	RCATGY	2 cut(s)	393, 634
BstSCI	CCNGG	4 cut(s)	49, 219, 526, 604
BstSFI	CTRYAG	1 cut(s)	481
BstUI	CGCG	1 cut(s)	112
BstV1I	GCAGC	2 cut(s)	518, 582
BstV2I	GAAGAC	1 cut(s)	159
BsuRI	GGCC	3 cut(s)	93, 519, 609
BtgI	CCRYGG	2 cut(s)	234, 246
BtsCI	GGATG	4 cut(s)	242, 358, 433, 505
BtsIMutI	CAGTG	2 cut(s)	513, 592
Cac8I	GCNNGC	1 cut(s)	391
CfoI	GCGC	2 cut(s)	112, 322
Cfr10I	RCCGGY	1 cut(s)	462
Cfr13I	GGNCC	1 cut(s)	608
CviAII	CATG	5 cut(s)	235, 328, 390, 394, 631
DdeI	CTNAG	1 cut(s)	363
EaeI	YGGCCR	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	638
EarI	CTCTTC	1 cut(s)	638
Eco130I	CCWWGG	1 cut(s)	234
EcoRII	CCWGG	2 cut(s)	49, 604
EcoT14I	CCWWGG	1 cut(s)	234
EcoT22I	ATGCAT	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	234
Esp3I	CGTCTC	1 cut(s)	549
FaeI	CATG	5 cut(s)	238, 331, 393, 397, 634
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	5 cut(s)	234, 327, 389, 393, 630
Fnu4HI	GCNGC	2 cut(s)	532, 596
FokI	GGATG	4 cut(s)	229, 345, 440, 512
Fsp4HI	GCNGC	2 cut(s)	532, 596
FspAI	RTGCGCAY	1 cut(s)	321
FspI	TGCGCA	1 cut(s)	321
GlaI	GCGC	2 cut(s)	111, 321
GluI	GCNGC	2 cut(s)	532, 596
GsuI	CTGGAG	1 cut(s)	393
HaeIII	GGCC	3 cut(s)	93, 519, 609
HapII	CCGG	4 cut(s)	221, 294, 463, 527
HhaI	GCGC	2 cut(s)	112, 322
Hin1II	CATG	5 cut(s)	238, 331, 393, 397, 634
Hin6I	GCGC	2 cut(s)	110, 320
HinP1I	GCGC	2 cut(s)	110, 320
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	4 cut(s)	139, 313, 344, 355
HpaII	CCGG	4 cut(s)	221, 294, 463, 527
HphI	GGTGA	3 cut(s)	349, 364, 430
Hpy166II	GTNNAC	3 cut(s)	6, 128, 291
Hpy188I	TCNGA	4 cut(s)	169, 349, 366, 577
Hpy188III	TCNNGA	2 cut(s)	71, 147
Hpy8I	GTNNAC	3 cut(s)	6, 128, 291
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	3 cut(s)	28, 411, 418
HpyCH4III	ACNGT	4 cut(s)	100, 132, 202, 587
HpyCH4V	TGCA	5 cut(s)	389, 393, 503, 534, 598
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 390, 601
HpyF3I	CTNAG	1 cut(s)	363
Hsp92II	CATG	5 cut(s)	238, 331, 393, 397, 634
HspAI	GCGC	2 cut(s)	110, 320
LmnI	GCTCC	3 cut(s)	265, 374, 538
Lsp1109I	GCAGC	2 cut(s)	518, 582
LweI	GCATC	3 cut(s)	331, 387, 490
MaeIII	GTNAC	3 cut(s)	310, 352, 491
MboII	GAAGA	3 cut(s)	126, 164, 655
MfeI	CAATTG	1 cut(s)	599
MlsI	TGGCCA	1 cut(s)	93
MluCI	AATT	4 cut(s)	82, 173, 280, 599
MluNI	TGGCCA	1 cut(s)	93
MlyI	GAGTC	2 cut(s)	307, 349
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	7 cut(s)	222, 256, 290, 343, 372, 428, 639
Mox20I	TGGCCA	1 cut(s)	93
Mph1103I	ATGCAT	1 cut(s)	395
MroXI	GAANNNNTTC	1 cut(s)	118
MscI	TGGCCA	1 cut(s)	93
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	2 cut(s)	245, 635
Msp20I	TGGCCA	1 cut(s)	93
MspI	CCGG	4 cut(s)	221, 294, 463, 527
MspR9I	CCNGG	4 cut(s)	51, 221, 528, 606
MunI	CAATTG	1 cut(s)	599
MvaI	CCWGG	2 cut(s)	51, 606
MvnI	CGCG	1 cut(s)	112
MwoI	GCNNNNNNNGC	3 cut(s)	257, 390, 601
NciI	CCSGG	2 cut(s)	221, 528
NcoI	CCATGG	1 cut(s)	234
NlaIII	CATG	5 cut(s)	238, 331, 393, 397, 634
NlaIV	GGNNCC	2 cut(s)	376, 650
NmuCI	GTSAC	2 cut(s)	310, 352
NsbI	TGCGCA	1 cut(s)	321
NsiI	ATGCAT	1 cut(s)	395
NspI	RCATGY	2 cut(s)	393, 634
OliI	CACNNNNGTG	1 cut(s)	245
PaeI	GCATGC	1 cut(s)	393
PasI	CCCWGGG	1 cut(s)	50
PciI	ACATGT	1 cut(s)	630
PdmI	GAANNNNTTC	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	139, 344
PflMI	CCANNNNNTGG	1 cut(s)	235
PkrI	GCNGC	2 cut(s)	533, 597
PleI	GAGTC	2 cut(s)	307, 349
PpsI	GAGTC	2 cut(s)	307, 349
PscI	ACATGT	1 cut(s)	630
Psp6I	CCWGG	2 cut(s)	49, 604
PspGI	CCWGG	2 cut(s)	49, 604
PspN4I	GGNNCC	2 cut(s)	376, 650
PspPI	GGNCC	1 cut(s)	608
RseI	CAYNNNNRTG	2 cut(s)	245, 635
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	2 cut(s)	532, 596
Sau96I	GGNCC	1 cut(s)	608
SchI	GAGTC	2 cut(s)	307, 349
ScrFI	CCNGG	4 cut(s)	51, 221, 528, 606
SetI	ASST	6 cut(s)	68, 82, 159, 339, 354, 420
SfaNI	GCATC	3 cut(s)	331, 387, 490
SfcI	CTRYAG	1 cut(s)	481
SmiMI	CAYNNNNRTG	2 cut(s)	245, 635
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
SphI	GCATGC	1 cut(s)	393
Sse9I	AATT	4 cut(s)	82, 173, 280, 599
StyD4I	CCNGG	4 cut(s)	49, 219, 526, 604
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	4 cut(s)	100, 132, 202, 587
TaqI	TCGA	2 cut(s)	86, 146
TasI	AATT	4 cut(s)	82, 173, 280, 599
TfiI	GAWTC	2 cut(s)	139, 344
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	2 cut(s)	520, 592
TseFI	GTSAC	2 cut(s)	310, 352
TseI	GCWGC	2 cut(s)	531, 595
Tsp45I	GTSAC	2 cut(s)	310, 352
TspDTI	ATGAA	4 cut(s)	194, 206, 437, 656
TspGWI	ACGGA	2 cut(s)	33, 235
TspRI	CASTG	2 cut(s)	520, 592
Van91I	CCANNNNNTGG	1 cut(s)	235
XceI	RCATGY	2 cut(s)	393, 634
XmnI	GAANNNNTTC	1 cut(s)	118
Zsp2I	ATGCAT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.