Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002955

Physical Location & Seq

Genomic Coordinates Forward (+)

19479091 .. 19489588

Gene Structure 10498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5712 bp

ATGGGTGGAGTGGTTGACGGCGGAGTTGGTATTGGTTTGAAAACCTCTCCACGCCGAGCAGCAATCGAGAAGGCCCAAGCAGAGCTTAGGCAGGAGTATGATGTGAGGGAGGAAAGAAGAAAGGAACTAGAATTTCTTGAGAAAGGTGGCAATCCTTTGGACTTCAAGGTTGGGAATGGAGCTTCTGTTAGTGTTCAGTCTACTTCACTCACTGATCAGCAACCAGAACAGTTTGTGACCAGTGAAGCAAAAGGTAGTTTTGCATTGACTGCATCACCGCATGGGGACTCTGTTGAAAGTAGCGGTCGACCAGAGGTTCCTACACTTTGTGAACCTAATAGTGCTGATAATCTCTTACTCTTTGATGCTGACAATGATGTTCCTGATGGTGAAAGGAATTCTATGCATCTTAGTAGAAGGAATAACAATGGTCCATCAGAACAGTCTTCCCAGATGGATGGGACTCAAAACCCCAAGGAGTCAGAAGACTCGGCTATATTCCGTCCATATGCTCGAAGGAACAGGTCCAGACCAAATCGTGATGGCACTCGATCAAGTTCAACAGATATACATGGTCGTGGAGGTCAGGGATCTTCTTTACCTTCTCGTGGGTTGTCAAAGGATCCTAAGAGGCCGATATCTGAAACTAACAACCAAAAGGACCAGAATATACCTTCTGGCCCTAACATAAAGTATGTGAGTTCAAATGGTGATATTGTTCCCAAGATTGTAACTTCTGATAATCAGTTCGATATGGACTTGGAGGGGGTGCAAGCCCCTGAAGTAATTACTGGTCCAATGAAAGATGGATATCAAAACAAATTGGATGTTACAACTCTTAAAAGTTTGAGGGATAGCCAACATAGTCAACCATCTCAGATTGATGCTCAGGAAACCCCCATTGATGTTTCTGAGAGATCTGATGTTTTTGCAGACAGGGAACCACTAGCATCATCCGTCCTTGAGTGTCCTCCTTGTGCTGCTACAACAAAGACTGAAAATGAACTTAGTTCGGTGCAGATGAATGGGTTTAACAATCTAAATAGAGAGAGTAAAAGTGTGCCACATGAAGGTCAAATTAGCAGTGCAGCTCTATGCCCAAAGGGTTTAGATTCAGAGTCTTCTTGCACCCAAACTAGTTTAGGATTAGATGTAAATAATGACAGTGACATGTGTACTACTACGAGGAACGCTGATAATGGAAATATTATTGAATCATCAGATGTGGATGGGACACAAAATCTAGCTGGCGGCGTAATGGTACAAGAAGATAAGGAAACCAAAGCTGTTGACAGTGGTGCTATTGTTAATGATAACCAGGCTTCTGTTTGTCAAAAGAACTCTGGCAATAGCGAAGTCAAAGTTGAGGAAGACATGAGTCAAAGTAGATCTGAGTTGCATAATGAAGTTAAGCTGCATTCAAACGTTGAGGGAGAACAACCAAGTGACCCTCTAATATCAGAAGCTGTTAACAAGGTGGATGAAGCTTTGGATAATAGTTCCAACATCAACAAAGAGAACTTTTCTACTGGCATATCCCAGGGTCCTCAAGAATCATCAATGCATGAGGTTCCTGGGACTGTTTTGTCAGGGCAAGATACTGCTGCAGGTTCTGACTGCCAGACTCCTAGAGTTCACTTGAAAGTGGTAGACAAGGCACATGAAGATTCTATTCTGGAAGAGGCTCGAATTATAGAGGCCAAGCGTAAGAGGATTGCTGAATTATCTGTTCGTTCTTTACCATCGGAGTATTGCCGAAAGTCTCAGTGGGATTTTGTCCTTGAGGAAATGGCTTGGTTGGCAAATGATTTTGCACAGGAGCGTCTTTGGAAGCTTACTGCTGCTGCTCAAATATGTTATCGCGCTGCTTTTACTTCTCGGTTGAGAATTGAATCCCAACATCAACATTGGGAGCTAAAAAAAGTGGCTCATGACCTGGCAAAGGCTGTCAACCAATTTTGGGTTTCAGCTGAGACCCTTTTGAAGGGCAACGATTCAAGTTCTTGTCAAAAGGACTGTAACTACGATTTGGTTGGATCAATGAGGATTGATGGGAACACAACTTCTCAAGACAAGAATGGGGAACCCAATATGGCACTGGAGCCAAGCAACGATTTGGAAGCACAGCATCCCCAAAAAGATCTTGCACTTTCAGTGCGGGGATACGCAGTGAGATTTTTGAAGTATAACAACTCTCTGGGTCCTGACCGTCAAGCACAAGCACCTGCTACTCCTGAGAGAATTTCTGATTTAGGCATTACAGAAATGTCGTGGGAGGATCATCTTACAGAGGAAAATCTCTTCTATGCAGTTCCCTCTGGTGCAATGGAAACCTATAGAAAATCAATCGAATCTCATTTGGTTCAGTTTGAGAGAACTGGTAGTAGCATGCAAGAGGAGGTTGAGACATCTATGTATGATGCAGGAGCAGAGTTCTGTTTTCAAGAGGCTGCATATGATGAGGATGAAGGAGAAACAAGCACCTATTATTTGCATGGAGCATTTGAAGGTAGCAAGTCATTAAAATCTAACCTGAAGAAACAAAAGAACTTGAAGTTATATGCTTCTAGGTCATATGAAGGAGCTGATTTGCCTTATGGCAACTGCACGACGGCAACTCACCCGCCCATATTGATGGGGAAAAGGCCTGCTAGTCTCAATGTTGGTTCAATTCCAACGAAACGCATGCGCACTGCTTCCAGGCAGAGGGTCGTTAGTCCATTTGGTGCTGGAGCTAATGGGAATGTTCTGGCTTCGATTAAGACAGATGCTTCAAGTGGTGATACTAATTCTTTTCAGGATGATCAAAGTACTTTACATGGTGGATCTCAGTTCCAGAAAAGTGTGGAGGTTGAATCTGTTGGGGACTTTGAAAAGCAGTTACCATATGACTATGCAGAAACATCAATGAAGCCTAAAAAGAAGAAGAAGGCCAAACATCTGGGTTCTGCCTATGATCAAGGATGGCAGCTGGATTCTGCTATACTTAATGAACAGAGGGATAATTCCAAAAAGAGATCGGAGGGTCATCATTATGAATCCAGTGGAACAATTGGTTTATACGGGCAACATACAGCCAAGAAGCCAAAGTTATTAAAGCAATCTCTAGATAATACTTATGACAGTATTACTCCAATGCCTGGATCCAATCCTTCTCCAGTGGCATCCCAAATGAGTAATATGTCCAATACCAGTAAATTTATTAAGTTGATTGGTGGTCGAGACAGGGGACGGAAAACTAAATCACTAAAGATGTCTGCTGGGCAGCCAGGTTCTGGAGGTCCATGGTCCCTTTTTGAAGATCAGGCACTTGTTGTTCTTGTACATGACATGGGCCCAAATTGGGAACTCATAAGTGATGCAATCAATAGCACGCTGCACTTGAAGTGTATTTTTCGCAAGCCTAAAGAGTGCAAGGAGCGTCACAAAATATTGATGGATATGAATACTGGTGATGGTGCTGATAGTGCTGAAGATTCAGGATCTTCTCAACCTTATCCATCTACAATACCGGGCATTCCGAAGGGCAGTGCCCGACAATTATTTCAACGCTTGCAAGAGCCAATGGAAGAGGATGTTCTCAAATCTCATTTTGAGAAAATAATTAACATTGGTCAAAAGCATCATTATCGGAGGAGTCAGAATGAAAACCAGGATCCGAAACAAATAACGACTGTCCACAATTCTCATGTTATGGCCCTTTCCCAAGTCTGTCCAAATAACTTGAATGGAGGTGTTCTAACGCCTCTTGATCTGTGTGATACCACTTCATCAAGCTCTGATGTCCTTGGGTATCAAGGATCTCATGCTAGTGGTTTAGCAATGTCAAATCAGGGTGCCATGGCGTCACTACTTCCTTCTGGGCCAAATGCCTTAATGCAGGGATCATCTGGTATGGTTCTTGGAAGCAACTTGCCATCCTCGTCTGGTCCACTTAGTGCCAACGTCAGAGATGGTAGATACAGTAGTCCAAGAACATCATCTTTGCCAGTTGATGAGCAGCAAAGAATGCAGCACTACAATCAAATGTTGTCTGGTAGAAACATTCAACAGTCTGGCTTGTCTGTGTCTGGAGCTCTTCCAGGAACTGATCGTGGAGTTCGTATGGTTCCTGGTGGAAATGGTATGGGCATGATGTGCGGGATGAACAGAGGCATGCCAGTGTCAAGGCCAGGATTTCAGGGAATGGCTTCATCATCTATGCTTAACTCTGGGAATATGCTTTCATCCAGTATGGTGGGGATACCAAGCCCTGTAAATGTGCACTCTGGAGCTGGTTCGGGTCAGGGAAACTTGATGTTAAGACCTCGCGATGCTTTGCATATGATGCGGCCTGGCCATAATCCGGAGCATCAAAGGCAACTTATGGTTCCAGAACTTCAAATGCAGGCCACACAAGGGAATGGCCAAGGAGTTGCTCCATTCAATGGGTTGAGTTCTGGTTTTCCTAATCAGCAAACTCTGCCATCTGCTCAAACATATCCAGGCCATAGCCCACAGCAGCATCAGATATCCCCACAACAGTCCCATGCACTCAGCAACCCTCATCACCCTCATCTTCAAGGCCCAAATCATGCTACGGGGTCGCAGCATCAAGCCTATGCCTTCCGCGTGAAAGAAAGGCAGTTGCAACAACGGTATTTGCAGCAGCAGCAACAACAGCAACAGTTTTCTGCATCTAATTCTTTGGTGCCACAGGTCCAGCCGCAGGCCCAACTTCCCATGTCATCAACTTTGCAAAATAGTTCCCAACTTCAGTCGCAAACTTCACCTCACCCGGTGTCTGTGTCCCCTATGACACCATCTTCCCCAAGGACTCCCATGTCATCCCAGCACCAGCAGAAACATCATCTGCCATCCCATGGCTTTAGCCGGAATCCTGGTGCTGGTGGGATGACCAATCAGATAGGGAAGCAACGACAAAGACAACCACAGCAGCACCATCTTCAGCAATCTGGTAGGCACCACCCTCAACAGCGGCAAATTACGCAGTCTCAGCAGCAGGCTAAACTTTCAAAGGGAATGGGAAGAGCCAATTCAATGGTGCATCAGAACCTCTCCATTGATCCTGCAAACCTCTCTATTGATTCTTCTCAACTTAATGGACTTGTGCCTCCAGGAAGCCAGTCTCTTGAGAACGGAGAACAGTTCATGCAATTGATGCAAGGTCAAGGTGCATATTCTGGGTCTGCCCTTAATCCAGCAACATCGAAACCATTGGTCCCCCAATCACCAAACCATTCTCAGTTGCAGCAAAAGTTACTTTGTAGTGCACCGACCAATTCATCAAAGCACCTCCAGCAAATGCCTTCTCATTCTGATAATATCACTCAGGGCCAGGTTCCACCAGTTCCTTCCAATCATACGATATCTGCTTCACATCAAACTGGCTCTCCATCAGGTATGGCTTCCAACCACCAGCAGCTGCAGCCGCAATCACAGGCACAGCAACAACAAAAGCAAGCTAATCAAACTCAGCCTTATGTTCAGAGAGTGCTGCAGCAGAATCGCCAAGTGAATTTGGAGATTCCAAATAAGTCTCAAAATGATCTAACTCAAGGTGATGAGCAGCCTGTGAATGGTGCTTCGCCGGTAGGTGTGAGCACGGCAATTCCTCAGTCCTGTATTGATTCATCTAGTGTAAAGCAGTATATGATGCTAACATGCCGAATTCAACTGCTCAAGTGGGTCCAGTTGGGAGCCCCCCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0016604 GO:0016607 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0036211 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071704 GO:0071840 GO:0097346 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1904949 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSA Myb_DNA-bind_6

Protein Analysis

1904

Amino Acids

207.28

Weight (kDa)

6.34

Isoelectric Point (pI)

56.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_6	PF13921	1096 - 1144	2.3e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24870 AT3G24870 AT3G24870 AT3G24870 AT3G24880 AT3G24880 AT3G24880
fragaria_vesca	FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860
malus_domestica	MD05G1174400.v1.1 MD10G1163500.v1.1
prunus_persica	Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1
pyrus_communis	pycom05g16120 pycom10g14100
rosa_chinensis	RchiOBHm_Chr6g0284671
rosa_laevigata	RLG00000012732
rosa_multiflora	Rmu_co8337863.1_g000001 Rmu_sc0007474.1_g000006
rosa_roxburghii	Rroxscaffold_7G00184490
rosa_rugosa	Rorug06G0165200 Rorug06G0165200 Rorug06G0165300 Rorug06G0165400
rosa_samantha	Rh6AG278300 Rh6BG278300 Rh6CG280600 Rh6DG273300
rosa_wichuraiana	Rw6G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2233
AasI	GACNNNNNNGTC	2 cut(s)	1585, 4822
Acc16I	TGCGCA	1 cut(s)	2690
Acc36I	ACCTGC	2 cut(s)	1598, 2233
AccB1I	GGYRCC	3 cut(s)	3836, 4690, 4962
AccB7I	CCANNNNNTGG	4 cut(s)	3140, 3275, 4427, 4862
AccI	GTMKAC	3 cut(s)	200, 307, 1650
AccII	CGCG	3 cut(s)	1863, 4311, 4611
AccIII	TCCGGA	1 cut(s)	4345
AclI	AACGTT	1 cut(s)	1425
AcoI	YGGCCR	2 cut(s)	4336, 4405
AcsI	RAATTY	6 cut(s)	131, 397, 2241, 3197, 5518, 5670
AcuI	CTGAAG	5 cut(s)	801, 2555, 3492, 4739, 4931
AcyI	GRCGYC	1 cut(s)	3845
AdeI	CACNNNGTG	3 cut(s)	329, 3938, 4780
AfaI	GTAC	4 cut(s)	1177, 1263, 2812, 3324
AflIII	ACRYGT	1 cut(s)	1170
AhlI	ACTAGT	1 cut(s)	1136
Alw21I	GWGCWC	4 cut(s)	4078, 4266, 5275, 5606
Alw26I	GTCTC	8 cut(s)	1767, 1967, 2399, 2660, 3216, 4998, 5133, 5544
Alw44I	GTGCAC	2 cut(s)	4262, 5271
AlwNI	CAGNNNCTG	5 cut(s)	1466, 1613, 3275, 4088, 5425
Aor13HI	TCCGGA	1 cut(s)	4345
ApaI	GGGCCC	1 cut(s)	3338
ApaLI	GTGCAC	2 cut(s)	4262, 5271
ApoI	RAATTY	6 cut(s)	131, 397, 2241, 3197, 5518, 5670
Asp700I	GAANNNNTTC	1 cut(s)	4189
AspLEI	GCGC	2 cut(s)	1865, 2691
AsuC2I	CCSGG	2 cut(s)	3513, 4778
BaeGI	GKGCMC	4 cut(s)	3338, 3535, 4266, 5275
BaeI	ACNNNNGTAYC	2 cut(s)	3952, 3985
BalI	TGGCCA	2 cut(s)	4338, 4407
BamHI	GGATCC	3 cut(s)	622, 3143, 3655
BanI	GGYRCC	3 cut(s)	3836, 4690, 4962
BanII	GRGCYC	3 cut(s)	3338, 4078, 5704
BauI	CACGAG	1 cut(s)	606
BbsI	GAAGAC	4 cut(s)	438, 492, 1113, 1377
Bbv12I	GWGCWC	4 cut(s)	4078, 4266, 5275, 5606
BceAI	ACGGC	3 cut(s)	34, 2628, 5622
BcgI	CGANNNNNNTGC	6 cut(s)	2668, 2702, 3611, 3645, 5489, 5523
BciVI	GTATCC	2 cut(s)	2156, 4236
BclI	TGATCA	3 cut(s)	214, 2803, 2956
BcnI	CCSGG	2 cut(s)	3513, 4778
BcoDI	GTCTC	8 cut(s)	1767, 1967, 2399, 2660, 3216, 4998, 5133, 5544
BcuI	ACTAGT	1 cut(s)	1136
BfmI	CTRYAG	4 cut(s)	1605, 2335, 5426, 5498
BfuAI	ACCTGC	2 cut(s)	1598, 2233
BfuI	GTATCC	2 cut(s)	2156, 4236
BglII	AGATCT	3 cut(s)	917, 1388, 2140
BmcAI	AGTACT	1 cut(s)	2812
BoxI	GACNNNNGTC	1 cut(s)	1377
BpiI	GAAGAC	4 cut(s)	438, 492, 1113, 1377
BpmI	CTGGAG	8 cut(s)	2120, 2751, 3141, 3297, 4092, 4290, 5100, 5282
Bpu10I	CCTNAGC	2 cut(s)	86, 888
BpuEI	CTTGAG	8 cut(s)	158, 983, 1533, 1802, 2052, 5153, 5541, 5666
BpuMI	CCSGG	2 cut(s)	3513, 4778
BsaBI	GATNNNNATC	1 cut(s)	810
BsaHI	GRCGYC	1 cut(s)	3845
BsaI	GGTCTC	1 cut(s)	1967
BsaWI	WCCGGW	1 cut(s)	4345
BsaXI	ACNNNNNCTCC	4 cut(s)	171, 201, 5377, 5407
Bse118I	RCCGGY	1 cut(s)	5590
Bse3DI	GCAATG	2 cut(s)	2331, 3828
Bse8I	GATNNNNATC	1 cut(s)	810
BseAI	TCCGGA	1 cut(s)	4345
BseJI	GATNNNNATC	1 cut(s)	810
BseMI	GCAATG	2 cut(s)	2331, 3828
BseRI	GAGGAG	2 cut(s)	2411, 3649
BseSI	GKGCMC	4 cut(s)	3338, 3535, 4266, 5275
BseYI	CCCAGC	2 cut(s)	3260, 4830
BsgI	GTGCAG	4 cut(s)	1037, 1107, 2590, 3362
Bsh1236I	CGCG	3 cut(s)	1863, 4311, 4611
Bsh1285I	CGRYCG	1 cut(s)	307
BshNI	GGYRCC	3 cut(s)	3836, 4690, 4962
BsiEI	CGRYCG	1 cut(s)	307
BsiHKAI	GWGCWC	4 cut(s)	4078, 4266, 5275, 5606
BsiSI	CCGG	5 cut(s)	3512, 4346, 4778, 4873, 5591
BsmAI	GTCTC	8 cut(s)	1767, 1967, 2399, 2660, 3216, 4998, 5133, 5544
BsmI	GAATGC	3 cut(s)	1417, 3516, 4014
Bso31I	GGTCTC	1 cut(s)	1967
Bsp120I	GGGCCC	1 cut(s)	3334
Bsp1286I	GDGCHC	7 cut(s)	3338, 3535, 4078, 4266, 5275, 5606, 5704
Bsp13I	TCCGGA	1 cut(s)	4345
Bsp1407I	TGTACA	1 cut(s)	3322
Bsp19I	CCATGG	3 cut(s)	3284, 3840, 4861
Bsp68I	TCGCGA	1 cut(s)	4311
BspEI	TCCGGA	1 cut(s)	4345
BspFNI	CGCG	3 cut(s)	1863, 4311, 4611
BspHI	TCATGA	1 cut(s)	1930
BspMAI	CTGCAG	3 cut(s)	1609, 5430, 5502
BspMI	ACCTGC	2 cut(s)	1598, 2233
BspQI	GCTCTTC	2 cut(s)	4083, 5023
BspT107I	GGYRCC	3 cut(s)	3836, 4690, 4962
BspTNI	GGTCTC	1 cut(s)	1967
BsrDI	GCAATG	2 cut(s)	2331, 3828
BsrFI	RCCGGY	1 cut(s)	5590
BsrGI	TGTACA	1 cut(s)	3322
BssAI	RCCGGY	1 cut(s)	5590
BssNI	GRCGYC	1 cut(s)	3845
BssSI	CACGAG	1 cut(s)	606
BssT1I	CCWWGG	7 cut(s)	474, 3284, 3787, 3840, 4408, 4811, 4861
Bst2BI	CACGAG	1 cut(s)	606
Bst6I	CTCTTC	5 cut(s)	1674, 2306, 3564, 4083, 5023
BstACI	GRCGYC	1 cut(s)	3845
BstAPI	GCANNNNNTGC	6 cut(s)	269, 4009, 4137, 4327, 4462, 5161
BstAUI	TGTACA	1 cut(s)	3322
BstDSI	CCRYGG	3 cut(s)	3284, 3840, 4861
BstENI	CCTNNNNNAGG	2 cut(s)	1940, 1982
BstFNI	CGCG	3 cut(s)	1863, 4311, 4611
BstHHI	GCGC	2 cut(s)	1865, 2691
BstMAI	GTCTC	8 cut(s)	1767, 1967, 2399, 2660, 3216, 4998, 5133, 5544
BstMCI	CGRYCG	1 cut(s)	307
BstNSI	RCATGY	5 cut(s)	1174, 2392, 2689, 4159, 5667
BstPAI	GACNNNNGTC	1 cut(s)	1377
BstSFI	CTRYAG	4 cut(s)	1605, 2335, 5426, 5498
BstSLI	GKGCMC	4 cut(s)	3338, 3535, 4266, 5275
BstUI	CGCG	3 cut(s)	1863, 4311, 4611
BstV2I	GAAGAC	4 cut(s)	438, 492, 1113, 1377
BstXI	CCANNNNNNTGG	5 cut(s)	458, 2635, 2941, 4237, 5041
BsuI	GTATCC	2 cut(s)	2156, 4236
BtgI	CCRYGG	3 cut(s)	3284, 3840, 4861
BtgZI	GCGATG	1 cut(s)	4326
BtsI	GCAGTG	4 cut(s)	1090, 2175, 2691, 3535
BtuMI	TCGCGA	1 cut(s)	4311
BveI	ACCTGC	2 cut(s)	1598, 2233
CaiI	CAGNNNCTG	5 cut(s)	1466, 1613, 3275, 4088, 5425
CciI	TCATGA	1 cut(s)	1930
CfoI	GCGC	2 cut(s)	1865, 2691
Cfr10I	RCCGGY	1 cut(s)	5590
CseI	GACGC	3 cut(s)	1811, 3410, 3834
Csp6I	GTAC	4 cut(s)	1176, 1262, 2811, 3323
CviQI	GTAC	4 cut(s)	1176, 1262, 2811, 3323
DraIII	CACNNNGTG	3 cut(s)	329, 3938, 4780
DrdI	GACNNNNNNGTC	2 cut(s)	1585, 4822
DseDI	GACNNNNNNGTC	2 cut(s)	1585, 4822
EaeI	YGGCCR	2 cut(s)	4336, 4405
Eam1104I	CTCTTC	5 cut(s)	1674, 2306, 3564, 4083, 5023
EarI	CTCTTC	5 cut(s)	1674, 2306, 3564, 4083, 5023
EciI	GGCGGA	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	4076
Eco130I	CCWWGG	7 cut(s)	474, 3284, 3787, 3840, 4408, 4811, 4861
Eco147I	AGGCCT	1 cut(s)	2647
Eco24I	GRGCYC	3 cut(s)	3338, 4078, 5704
Eco31I	GGTCTC	1 cut(s)	1967
Eco32I	GATATC	4 cut(s)	639, 812, 4512, 5370
Eco53kI	GAGCTC	1 cut(s)	4076
Eco57I	CTGAAG	5 cut(s)	801, 2555, 3492, 4739, 4931
EcoICRI	GAGCTC	1 cut(s)	4076
EcoNI	CCTNNNNNAGG	2 cut(s)	1940, 1982
EcoO109I	RGGNCCY	2 cut(s)	1544, 2201
EcoRI	GAATTC	2 cut(s)	397, 5670
EcoRV	GATATC	4 cut(s)	639, 812, 4512, 5370
EcoT14I	CCWWGG	7 cut(s)	474, 3284, 3787, 3840, 4408, 4811, 4861
EcoT22I	ATGCAT	2 cut(s)	408, 1566
EcoT38I	GRGCYC	3 cut(s)	3338, 4078, 5704
ErhI	CCWWGG	7 cut(s)	474, 3284, 3787, 3840, 4408, 4811, 4861
FalI	AAGNNNNNCTT	2 cut(s)	69, 101
FauI	CCCGC	3 cut(s)	2151, 2631, 4133
FauNDI	CATATG	5 cut(s)	508, 2455, 2575, 2887, 4323
FbaI	TGATCA	3 cut(s)	214, 2803, 2956
FblI	GTMKAC	3 cut(s)	200, 307, 1650
FriOI	GRGCYC	3 cut(s)	3338, 4078, 5704
FspAI	RTGCGCAY	1 cut(s)	2690
FspI	TGCGCA	1 cut(s)	2690
GlaI	GCGC	2 cut(s)	1864, 2690
GsaI	CCCAGC	2 cut(s)	3264, 4834
GsuI	CTGGAG	8 cut(s)	2120, 2751, 3141, 3297, 4092, 4290, 5100, 5282
HapII	CCGG	5 cut(s)	3512, 4346, 4778, 4873, 5591
HgaI	GACGC	3 cut(s)	1811, 3410, 3834
HhaI	GCGC	2 cut(s)	1865, 2691
Hin1I	GRCGYC	1 cut(s)	3845
Hin6I	GCGC	2 cut(s)	1863, 2689
HinP1I	GCGC	2 cut(s)	1863, 2689
HincII	GTYRAC	6 cut(s)	16, 308, 869, 1291, 1471, 1951
HindII	GTYRAC	6 cut(s)	16, 308, 869, 1291, 1471, 1951
HindIII	AAGCTT	2 cut(s)	1485, 1832
HpaI	GTTAAC	1 cut(s)	1471
HpaII	CCGG	5 cut(s)	3512, 4346, 4778, 4873, 5591
Hpy99I	CGWCG	1 cut(s)	2614
HpyCH4IV	ACGT	2 cut(s)	1425, 3945
HpySE526I	ACGT	2 cut(s)	1425, 3945
Hsp92I	GRCGYC	1 cut(s)	3845
HspAI	GCGC	2 cut(s)	1863, 2689
Kpn2I	TCCGGA	1 cut(s)	4345
Ksp22I	TGATCA	3 cut(s)	214, 2803, 2956
KspAI	GTTAAC	1 cut(s)	1471
LguI	GCTCTTC	2 cut(s)	4083, 5023
MaeII	ACGT	2 cut(s)	1425, 3945
MfeI	CAATTG	2 cut(s)	3051, 5156
MhlI	GDGCHC	7 cut(s)	3338, 3535, 4078, 4266, 5275, 5606, 5704
MlsI	TGGCCA	2 cut(s)	4338, 4407
MluNI	TGGCCA	2 cut(s)	4338, 4407
MlyI	GAGTC	9 cut(s)	281, 457, 482, 488, 1127, 1387, 1618, 3646, 4810
MmeI	TCCRAC	4 cut(s)	1527, 2014, 2699, 5436
Mox20I	TGGCCA	2 cut(s)	4338, 4407
Mph1103I	ATGCAT	2 cut(s)	408, 1566
MroI	TCCGGA	1 cut(s)	4345
MroXI	GAANNNNTTC	1 cut(s)	4189
MscI	TGGCCA	2 cut(s)	4338, 4407
MslI	CAYNNNNRTG	5 cut(s)	576, 2633, 3033, 3810, 4160
Msp20I	TGGCCA	2 cut(s)	4338, 4407
MspA1I	CMGCKG	4 cut(s)	1970, 2971, 4978, 5425
MspI	CCGG	5 cut(s)	3512, 4346, 4778, 4873, 5591
MunI	CAATTG	2 cut(s)	3051, 5156
Mva1269I	GAATGC	3 cut(s)	1417, 3516, 4014
MvnI	CGCG	3 cut(s)	1863, 4311, 4611
NciI	CCSGG	2 cut(s)	3513, 4778
NcoI	CCATGG	3 cut(s)	3284, 3840, 4861
NdeI	CATATG	5 cut(s)	508, 2455, 2575, 2887, 4323
NmeAIII	GCCGAG	2 cut(s)	80, 470
NmuCI	GTSAC	5 cut(s)	235, 1166, 1445, 3422, 3846
NruI	TCGCGA	1 cut(s)	4311
NsbI	TGCGCA	1 cut(s)	2690
NsiI	ATGCAT	2 cut(s)	408, 1566
NspI	RCATGY	5 cut(s)	1174, 2392, 2689, 4159, 5667
PaeI	GCATGC	3 cut(s)	2392, 2689, 4159
PagI	TCATGA	1 cut(s)	1930
PaqCI	CACCTGC	1 cut(s)	2233
PasI	CCCWGGG	1 cut(s)	1540
PceI	AGGCCT	1 cut(s)	2647
PciI	ACATGT	1 cut(s)	1170
PciSI	GCTCTTC	2 cut(s)	4083, 5023
PcsI	WCGNNNNNNNCGW	1 cut(s)	4099
PctI	GAATGC	3 cut(s)	1417, 3516, 4014
PdmI	GAANNNNTTC	1 cut(s)	4189
PflMI	CCANNNNNTGG	4 cut(s)	3140, 3275, 4427, 4862
PfoI	TCCNGGA	2 cut(s)	4081, 5116
PleI	GAGTC	9 cut(s)	281, 457, 482, 487, 1126, 1386, 1618, 3645, 4810
PpsI	GAGTC	9 cut(s)	281, 457, 482, 487, 1126, 1386, 1618, 3645, 4810
PpuMI	RGGWCCY	2 cut(s)	1544, 2201
PscI	ACATGT	1 cut(s)	1170
PshAI	GACNNNNGTC	1 cut(s)	1377
Psp124BI	GAGCTC	1 cut(s)	4078
Psp1406I	AACGTT	1 cut(s)	1425
Psp5II	RGGWCCY	2 cut(s)	1544, 2201
PspFI	CCCAGC	2 cut(s)	3260, 4830
PspOMI	GGGCCC	1 cut(s)	3334
PspPPI	RGGWCCY	2 cut(s)	1544, 2201
PstI	CTGCAG	3 cut(s)	1609, 5430, 5502
PstNI	CAGNNNCTG	5 cut(s)	1466, 1613, 3275, 4088, 5425
PvuII	CAGCTG	3 cut(s)	1970, 2971, 5425
RruI	TCGCGA	1 cut(s)	4311
RsaI	GTAC	4 cut(s)	1177, 1263, 2812, 3324
RsaNI	GTAC	4 cut(s)	1176, 1262, 2811, 3323
RseI	CAYNNNNRTG	5 cut(s)	576, 2633, 3033, 3810, 4160
SacI	GAGCTC	1 cut(s)	4078
SalI	GTCGAC	1 cut(s)	306
SapI	GCTCTTC	2 cut(s)	4083, 5023
ScaI	AGTACT	1 cut(s)	2812
SchI	GAGTC	9 cut(s)	281, 457, 482, 488, 1127, 1387, 1618, 3646, 4810
SduI	GDGCHC	7 cut(s)	3338, 3535, 4078, 4266, 5275, 5606, 5704
SfcI	CTRYAG	4 cut(s)	1605, 2335, 5426, 5498
SmiMI	CAYNNNNRTG	5 cut(s)	576, 2633, 3033, 3810, 4160
SmlI	CTYRAG	8 cut(s)	137, 962, 1548, 1781, 2067, 5132, 5556, 5681
SmoI	CTYRAG	8 cut(s)	137, 962, 1548, 1781, 2067, 5132, 5556, 5681
SpeI	ACTAGT	1 cut(s)	1136
SphI	GCATGC	3 cut(s)	2392, 2689, 4159
SseBI	AGGCCT	1 cut(s)	2647
SspI	AATATT	2 cut(s)	1207, 3432
SstI	GAGCTC	1 cut(s)	4078
StuI	AGGCCT	1 cut(s)	2647
StyI	CCWWGG	7 cut(s)	474, 3284, 3787, 3840, 4408, 4811, 4861
TaiI	ACGT	2 cut(s)	1428, 3948
TatI	WGTACW	3 cut(s)	1175, 2810, 3322
TauI	GCSGC	5 cut(s)	1254, 4333, 4708, 4981, 5434
TseFI	GTSAC	5 cut(s)	235, 1166, 1445, 3422, 3846
Tsp45I	GTSAC	5 cut(s)	235, 1166, 1445, 3422, 3846
TspGWI	ACGGA	4 cut(s)	491, 946, 3247, 5154
Van91I	CCANNNNNTGG	4 cut(s)	3140, 3275, 4427, 4862
VneI	GTGCAC	2 cut(s)	4262, 5271
XagI	CCTNNNNNAGG	2 cut(s)	1940, 1982
XapI	RAATTY	6 cut(s)	131, 397, 2241, 3197, 5518, 5670
XbaI	TCTAGA	1 cut(s)	3106
XceI	RCATGY	5 cut(s)	1174, 2392, 2689, 4159, 5667
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2095
XmiI	GTMKAC	3 cut(s)	200, 307, 1650
XmnI	GAANNNNTTC	1 cut(s)	4189
ZrmI	AGTACT	1 cut(s)	2812
Zsp2I	ATGCAT	2 cut(s)	408, 1566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.