Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008257

Physical Location & Seq

Genomic Coordinates Forward (+)

23497321 .. 23498178

Gene Structure 858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGGGAAAAATGTTTCTAACGCAAAAACATTTCTTGAGAAAAGGTACACCGAGGACATGGAACTTGATGATGCTGTCCACACGGCAATATTGACCCTGAAAGAAGGGTTTGAAGGACAAATTTCTGGTAAAAACATTGAGATTGGGATAATTGGCGCTGACAAAAAATTCAGAGTACTTACACCAGCTGAAATTGAAGATTACTTGGCCGAGGTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005839 GO:0005840 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0010043 GO:0019773 GO:0022626 GO:0032991 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1902494 GO:1905368 GO:1905369 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

74

Amino Acids

8.15

Weight (kDa)

4.7

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	1 - 51	2.7e-09	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35130 AT2G35130 AT2G35130
fragaria_vesca	FvH4_3g12360
malus_domestica	MD05G1251300.v1.1 MD10G1231700.v1.1 MD10G1231800.v1.1
prunus_persica	Prupe.4G112600_v2.0.a1
pyrus_communis	pycom05g20750 pycom05g22900 pycom10g19500 pycom10g19510
rosa_chinensis	RchiOBHm_Chr5g0020151
rosa_laevigata	RLG00000032505
rosa_roxburghii	Rroxscaffold_1G00058050
rosa_rugosa	Rorug05G0057400 Rorug05G0057500
rosa_samantha	Rh5AG147600 Rh5AG147700 Rh5BG147200 Rh5CG158600 Rh5DG146500
rosa_wichuraiana	Rw5G013050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	2 cut(s)	120, 167
AfaI	GTAC	2 cut(s)	47, 177
AgsI	TTSAA	2 cut(s)	113, 197
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
AoxI	GGCC	1 cut(s)	207
ApoI	RAATTY	2 cut(s)	120, 167
AspLEI	GCGC	1 cut(s)	158
BceAI	ACGGC	1 cut(s)	99
BfoI	RGCGCY	1 cut(s)	159
BmcAI	AGTACT	1 cut(s)	177
BmsI	GCATC	1 cut(s)	61
BpuEI	CTTGAG	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	51, 210
BseDI	CCNNGG	2 cut(s)	51, 210
BshFI	GGCC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	209
BspANI	GGCC	1 cut(s)	209
BssECI	CCNNGG	2 cut(s)	51, 210
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	209
CfoI	GCGC	1 cut(s)	158
Csp6I	GTAC	2 cut(s)	46, 176
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	2 cut(s)	188, 209
CviKI_1	RGCY	2 cut(s)	188, 209
CviQI	GTAC	2 cut(s)	46, 176
EaeI	YGGCCR	1 cut(s)	207
FaeI	CATG	1 cut(s)	61
FaiI	YATR	1 cut(s)	59
FatI	CATG	1 cut(s)	57
GlaI	GCGC	1 cut(s)	157
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	209
HhaI	GCGC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	61
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
Hpy166II	GTNNAC	2 cut(s)	48, 79
Hpy188I	TCNGA	1 cut(s)	173
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	2 cut(s)	48, 79
HpyAV	CCTTC	2 cut(s)	98, 107
Hsp92II	CATG	1 cut(s)	61
HspAI	GCGC	1 cut(s)	156
LpnPI	CCDG	3 cut(s)	110, 111, 198
LweI	GCATC	1 cut(s)	61
MboII	GAAGA	1 cut(s)	209
MluCI	AATT	4 cut(s)	120, 150, 167, 192
MnlI	CCTC	2 cut(s)	46, 205
MspA1I	CMGCKG	1 cut(s)	188
NlaIII	CATG	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	2 cut(s)	47, 177
RsaNI	GTAC	2 cut(s)	46, 176
ScaI	AGTACT	1 cut(s)	177
SetI	ASST	3 cut(s)	47, 190, 216
SfaNI	GCATC	1 cut(s)	61
SgeI	CNNG	9 cut(s)	47, 64, 70, 77, 94, 109, 138, 197, 217
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	4 cut(s)	120, 150, 167, 192
SspI	AATATT	1 cut(s)	90
TasI	AATT	4 cut(s)	120, 150, 167, 192
TatI	WGTACW	1 cut(s)	175
XapI	RAATTY	2 cut(s)	120, 167
ZrmI	AGTACT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.