Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008667

Physical Location & Seq

Genomic Coordinates Reverse (-)

27746842 .. 27748741

Gene Structure 1900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCAGCTCCTCTGCCTCTCATTCTCAGAAACCCTCCTCACCGTCTCTGCACTCACCACCTCCTCCCTCCTCTTTCCACCTCCACCATCAAACCCTTCTCTCTGGTTTCCTTCTCCTCCAACACCAGGTCCTTTCCCATCCTAAAGTCCACTCAGATGGAAGGGGGTGAAATTACAGAGGAAGTTACAGAGACAAGTTCAACTGAGACCAATGTGATTGGGAAGAAGAAAATATTTGTGGCTGGTGCCACTGGAAATACTGGTAAAAGAATTGTTGAGCAGCTGCTGGCCAAGGGTTTCTCAGTTAAAGCCGGAGTTCGGAACTTGGAGAAAGCGAAAGCTAGCCTTCCCTCAGACAACCCAGCTCTTCAAATTGTGAAGGCAGATGTGACAGATGGTTCTGCTAAGTTAGCAGAAGTGATAAGTGATGATTCAGAAGCTGTGATTTGTGCCACTGGATTCAGCTACGGATGGGATGTGTTTGCTCCATGGAAGGTTGATAATTTTGGCACAGTCAACCTCGTTGAAGCATGCCGTAAACTTGGTGTGAACCGGTTTATTCTTGTGAGTTCCATCTTGGTCAATGGAGCAGCAATGGGGCAGATTCTCAACCCAGCTTACATCTTCCTCAATGTTTTTGGGCTCACCTTAATAGCAAAGCTTCAGGCAGAGAATTATATCAGGAAATCGGGTATAAACTACACGATTATAAGGCCCGGTGGGTTGAGAAACGACCCTCCAACCGGAAATCTTGTAATGGAGCCAGAGGACACTCTTTCGGAAGGCAGCATCTCTAGAGACCTGGTTGCAGAAGTGGCTGTCGAGGCATTACTGAATCCTGAAGCGTCTTACAAGGTTGTGGAGATAGTTTCGCGGCCTGATGCCCCTAAGCGTTCGTATGAGGATCTTTTCGGTTCCATCAAGCAACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

311

Amino Acids

33.47

Weight (kDa)

7.67

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	75 - 237	3.6e-17	NmrA-like family
Epimerase	PF01370	78 - 239	1.1e-12	NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd	PF16363	79 - 192	5.1e-06	GDP-mannose 4,6 dehydratase
3Beta_HSD	PF01073	80 - 201	3.7e-08	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_10	PF13460	82 - 280	7.3e-46	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34460
fragaria_vesca	FvH4_3g05850 FvH4_3g05850 FvH4_3g05850
malus_domestica	MD05G1286400.v1.1 MD05G1286500.v1.1 MD10G1264000.v1.1
prunus_persica	Prupe.4G078400_v2.0.a1 Prupe.4G078500_v2.0.a1
pyrus_communis	pycom05g26490 pycom10g22010
rosa_chinensis	RchiOBHm_Chr5g0013671 RchiOBHm_Chr6g0254821
rosa_laevigata	RLG00000009678 RLG00000032039
rosa_roxburghii	Rroxscaffold_1G00062930
rosa_rugosa	Rorug05G0011900 Rorug05G0012000
rosa_samantha	Rh5AG106400 Rh5BG102600 Rh5CG114500 Rh5DG101300
rosa_wichuraiana	Rw5G009280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	710
AccB1I	GGYRCC	1 cut(s)	245
AccII	CGCG	1 cut(s)	874
AciI	CCGC	1 cut(s)	874
AclWI	GGATC	1 cut(s)	912
AcoI	YGGCCR	1 cut(s)	288
AcuI	CTGAAG	2 cut(s)	647, 861
AfiI	CCNNNNNNNGG	3 cut(s)	126, 318, 743
AgeI	ACCGGT	1 cut(s)	552
AgsI	TTSAA	3 cut(s)	201, 371, 527
AjnI	CCWGG	2 cut(s)	125, 801
AluBI	AGCT	8 cut(s)	8, 283, 341, 365, 440, 465, 617, 661
AluI	AGCT	8 cut(s)	8, 283, 341, 365, 440, 465, 617, 661
Alw26I	GTCTC	4 cut(s)	50, 185, 200, 792
AlwI	GGATC	1 cut(s)	912
AlwNI	CAGNNNCTG	2 cut(s)	286, 440
AoxI	GGCC	3 cut(s)	288, 713, 875
ApeKI	GCWGC	5 cut(s)	5, 280, 283, 590, 786
AsiGI	ACCGGT	1 cut(s)	552
AspS9I	GGNCC	2 cut(s)	129, 714
AsuC2I	CCSGG	1 cut(s)	717
AsuHPI	GGTGA	4 cut(s)	32, 47, 179, 637
AsuNHI	GCTAGC	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	129
BalI	TGGCCA	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	645
BbvI	GCAGC	5 cut(s)	17, 270, 292, 602, 798
BccI	CCATC	7 cut(s)	95, 146, 151, 389, 465, 581, 926
BceAI	ACGGC	1 cut(s)	519
BciT130I	CCWGG	2 cut(s)	127, 803
BcnI	CCSGG	1 cut(s)	717
BcoDI	GTCTC	4 cut(s)	50, 185, 200, 792
BfaI	CTAG	2 cut(s)	342, 795
BisI	GCNGC	6 cut(s)	6, 281, 284, 591, 787, 875
BlsI	GCNGC	6 cut(s)	7, 282, 285, 592, 788, 876
Bme1390I	CCNGG	3 cut(s)	127, 717, 803
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	2 cut(s)	129, 714
BmiI	GGNNCC	3 cut(s)	247, 762, 916
BmrFI	CCNGG	3 cut(s)	127, 717, 803
BmsI	GCATC	2 cut(s)	798, 871
BmtI	GCTAGC	1 cut(s)	345
Bpu10I	CCTNAGC	1 cut(s)	888
BpuMI	CCSGG	1 cut(s)	717
BsaI	GGTCTC	2 cut(s)	200, 792
BsaJI	CCNNGG	2 cut(s)	291, 488
BsaWI	WCCGGW	2 cut(s)	552, 743
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 318, 743
Bse118I	RCCGGY	1 cut(s)	552
Bse1I	ACTGG	3 cut(s)	256, 265, 460
Bse3DI	GCAATG	1 cut(s)	600
BseBI	CCWGG	2 cut(s)	127, 803
BseDI	CCNNGG	2 cut(s)	291, 488
BseGI	GGATG	3 cut(s)	138, 476, 481
BseLI	CCNNNNNNNGG	3 cut(s)	126, 318, 743
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	5 cut(s)	40, 167, 195, 315, 366
BseNI	ACTGG	3 cut(s)	256, 265, 460
BseRI	GAGGAG	4 cut(s)	27, 53, 60, 106
BseXI	GCAGC	5 cut(s)	17, 270, 292, 602, 798
BseYI	CCCAGC	2 cut(s)	361, 613
BsgI	GTGCAG	1 cut(s)	34
Bsh1236I	CGCG	1 cut(s)	874
BshFI	GGCC	3 cut(s)	290, 715, 877
BshNI	GGYRCC	1 cut(s)	245
BshTI	ACCGGT	1 cut(s)	552
BsiSI	CCGG	4 cut(s)	312, 553, 717, 744
BslI	CCNNNNNNNGG	3 cut(s)	126, 318, 743
BsmAI	GTCTC	4 cut(s)	50, 185, 200, 792
BsmBI	CGTCTC	1 cut(s)	50
BsnI	GGCC	3 cut(s)	290, 715, 877
Bso31I	GGTCTC	2 cut(s)	200, 792
Bsp1286I	GDGCHC	1 cut(s)	645
Bsp143I	GATC	1 cut(s)	904
Bsp19I	CCATGG	1 cut(s)	488
BspACI	CCGC	1 cut(s)	874
BspANI	GGCC	3 cut(s)	290, 715, 877
BspCNI	CTCAG	5 cut(s)	39, 166, 196, 314, 365
BspFNI	CGCG	1 cut(s)	874
BspLI	GGNNCC	3 cut(s)	247, 762, 916
BspOI	GCTAGC	1 cut(s)	345
BspPI	GGATC	1 cut(s)	912
BspQI	GCTCTTC	1 cut(s)	372
BspT107I	GGYRCC	1 cut(s)	245
BspTNI	GGTCTC	2 cut(s)	200, 792
BsrDI	GCAATG	1 cut(s)	600
BsrFI	RCCGGY	1 cut(s)	552
BsrI	ACTGG	3 cut(s)	256, 265, 460
BssAI	RCCGGY	1 cut(s)	552
BssECI	CCNNGG	2 cut(s)	291, 488
BssMI	GATC	1 cut(s)	904
BssT1I	CCWWGG	2 cut(s)	291, 488
Bst2UI	CCWGG	2 cut(s)	127, 803
Bst4CI	ACNGT	3 cut(s)	44, 514, 930
Bst6I	CTCTTC	1 cut(s)	372
BstC8I	GCNNGC	3 cut(s)	288, 343, 532
BstDEI	CTNAG	7 cut(s)	26, 153, 204, 301, 352, 405, 888
BstDSI	CCRYGG	1 cut(s)	488
BstF5I	GGATG	3 cut(s)	138, 476, 481
BstFNI	CGCG	1 cut(s)	874
BstKTI	GATC	1 cut(s)	907
BstMAI	GTCTC	4 cut(s)	50, 185, 200, 792
BstMBI	GATC	1 cut(s)	904
BstMWI	GCNNNNNNNGC	3 cut(s)	410, 815, 824
BstNI	CCWGG	2 cut(s)	127, 803
BstNSI	RCATGY	1 cut(s)	534
BstSCI	CCNGG	3 cut(s)	125, 715, 801
BstUI	CGCG	1 cut(s)	874
BstV1I	GCAGC	5 cut(s)	17, 270, 292, 602, 798
BstX2I	RGATCY	1 cut(s)	904
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	904
BsuRI	GGCC	3 cut(s)	290, 715, 877
BtgI	CCRYGG	1 cut(s)	488
BtsCI	GGATG	3 cut(s)	138, 476, 481
BtsIMutI	CAGTG	2 cut(s)	249, 453
Cac8I	GCNNGC	3 cut(s)	288, 343, 532
CaiI	CAGNNNCTG	2 cut(s)	286, 440
Cfr10I	RCCGGY	1 cut(s)	552
Cfr13I	GGNCC	2 cut(s)	129, 714
CseI	GACGC	1 cut(s)	834
CsiI	ACCWGGT	2 cut(s)	125, 801
CspAI	ACCGGT	1 cut(s)	552
CviAII	CATG	2 cut(s)	489, 531
DdeI	CTNAG	7 cut(s)	26, 153, 204, 301, 352, 405, 888
DpnI	GATC	1 cut(s)	906
DpnII	GATC	1 cut(s)	904
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco130I	CCWWGG	2 cut(s)	291, 488
Eco24I	GRGCYC	1 cut(s)	645
Eco31I	GGTCTC	2 cut(s)	200, 792
Eco47I	GGWCC	1 cut(s)	129
Eco57I	CTGAAG	2 cut(s)	647, 861
EcoO109I	RGGNCCY	1 cut(s)	129
EcoRII	CCWGG	2 cut(s)	125, 801
EcoT14I	CCWWGG	2 cut(s)	291, 488
EcoT38I	GRGCYC	1 cut(s)	645
ErhI	CCWWGG	2 cut(s)	291, 488
Esp3I	CGTCTC	1 cut(s)	50
FaeI	CATG	2 cut(s)	492, 534
FaiI	YATR	6 cut(s)	490, 532, 678, 695, 710, 900
FalI	AAGNNNNNCTT	2 cut(s)	330, 362
FatI	CATG	2 cut(s)	488, 530
Fnu4HI	GCNGC	6 cut(s)	6, 281, 284, 591, 787, 875
FokI	GGATG	3 cut(s)	125, 483, 488
FriOI	GRGCYC	1 cut(s)	645
Fsp4HI	GCNGC	6 cut(s)	6, 281, 284, 591, 787, 875
FspBI	CTAG	2 cut(s)	342, 795
GluI	GCNGC	6 cut(s)	6, 281, 284, 591, 787, 875
GsaI	CCCAGC	2 cut(s)	365, 617
HaeIII	GGCC	3 cut(s)	290, 715, 877
HapII	CCGG	4 cut(s)	312, 553, 717, 744
HgaI	GACGC	1 cut(s)	834
Hin1II	CATG	2 cut(s)	492, 534
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	1 cut(s)	659
HinfI	GANTC	4 cut(s)	431, 459, 604, 835
HpaII	CCGG	4 cut(s)	312, 553, 717, 744
HphI	GGTGA	4 cut(s)	32, 47, 179, 637
Hpy166II	GTNNAC	4 cut(s)	150, 517, 539, 550
Hpy188I	TCNGA	6 cut(s)	29, 156, 321, 355, 436, 781
Hpy188III	TCNNGA	3 cut(s)	682, 795, 839
Hpy8I	GTNNAC	4 cut(s)	150, 517, 539, 550
HpyAV	CCTTC	7 cut(s)	106, 121, 155, 356, 373, 487, 776
HpyCH4III	ACNGT	3 cut(s)	44, 514, 930
HpyCH4V	TGCA	2 cut(s)	51, 809
HpyF10VI	GCNNNNNNNGC	3 cut(s)	410, 815, 824
HpyF3I	CTNAG	7 cut(s)	26, 153, 204, 301, 352, 405, 888
Hsp92II	CATG	2 cut(s)	492, 534
Kzo9I	GATC	1 cut(s)	904
LguI	GCTCTTC	1 cut(s)	372
LmnI	GCTCC	4 cut(s)	13, 490, 587, 760
Lsp1109I	GCAGC	5 cut(s)	17, 270, 292, 602, 798
LweI	GCATC	2 cut(s)	798, 871
MabI	ACCWGGT	2 cut(s)	125, 801
MaeI	CTAG	2 cut(s)	342, 795
MaeIII	GTNAC	2 cut(s)	184, 388
MalI	GATC	1 cut(s)	906
MboI	GATC	1 cut(s)	904
MboII	GAAGA	4 cut(s)	235, 238, 359, 616
MflI	RGATCY	1 cut(s)	904
MhlI	GDGCHC	1 cut(s)	645
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	5 cut(s)	171, 270, 372, 502, 673
MluNI	TGGCCA	1 cut(s)	290
MmeI	TCCRAC	2 cut(s)	144, 764
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	2 cut(s)	306, 650
MslI	CAYNNNNRTG	1 cut(s)	155
Msp20I	TGGCCA	1 cut(s)	290
MspA1I	CMGCKG	1 cut(s)	283
MspI	CCGG	4 cut(s)	312, 553, 717, 744
MspR9I	CCNGG	3 cut(s)	127, 717, 803
MvaI	CCWGG	2 cut(s)	127, 803
MvnI	CGCG	1 cut(s)	874
MwoI	GCNNNNNNNGC	3 cut(s)	410, 815, 824
NciI	CCSGG	1 cut(s)	717
NcoI	CCATGG	1 cut(s)	488
NdeII	GATC	1 cut(s)	904
NheI	GCTAGC	1 cut(s)	341
NlaIII	CATG	2 cut(s)	492, 534
NlaIV	GGNNCC	3 cut(s)	247, 762, 916
NmuCI	GTSAC	1 cut(s)	388
NspI	RCATGY	1 cut(s)	534
PaeI	GCATGC	1 cut(s)	534
PciSI	GCTCTTC	1 cut(s)	372
PfeI	GAWTC	4 cut(s)	431, 459, 604, 835
PinAI	ACCGGT	1 cut(s)	552
PkrI	GCNGC	6 cut(s)	7, 282, 285, 592, 788, 876
PpuMI	RGGWCCY	1 cut(s)	129
PsiI	TTATAA	1 cut(s)	710
Psp5II	RGGWCCY	1 cut(s)	129
Psp6I	CCWGG	2 cut(s)	125, 801
PspFI	CCCAGC	2 cut(s)	361, 613
PspGI	CCWGG	2 cut(s)	125, 801
PspN4I	GGNNCC	3 cut(s)	247, 762, 916
PspPI	GGNCC	2 cut(s)	129, 714
PspPPI	RGGWCCY	1 cut(s)	129
PstNI	CAGNNNCTG	2 cut(s)	286, 440
PsuI	RGATCY	1 cut(s)	904
PvuII	CAGCTG	1 cut(s)	283
RseI	CAYNNNNRTG	1 cut(s)	155
SapI	GCTCTTC	1 cut(s)	372
SaqAI	TTAA	2 cut(s)	306, 650
SatI	GCNGC	6 cut(s)	6, 281, 284, 591, 787, 875
Sau3AI	GATC	1 cut(s)	904
Sau96I	GGNCC	2 cut(s)	129, 714
ScrFI	CCNGG	3 cut(s)	127, 717, 803
SduI	GDGCHC	1 cut(s)	645
SexAI	ACCWGGT	2 cut(s)	125, 801
SfaNI	GCATC	2 cut(s)	798, 871
SinI	GGWCC	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	155
SphI	GCATGC	1 cut(s)	534
Sse9I	AATT	5 cut(s)	171, 270, 372, 502, 673
SsiI	CCGC	1 cut(s)	874
SspI	AATATT	1 cut(s)	234
SspMI	CTAG	2 cut(s)	342, 795
StyD4I	CCNGG	3 cut(s)	125, 715, 801
StyI	CCWWGG	2 cut(s)	291, 488
TaaI	ACNGT	3 cut(s)	44, 514, 930
TaqI	TCGA	1 cut(s)	822
TasI	AATT	5 cut(s)	171, 270, 372, 502, 673
TauI	GCSGC	1 cut(s)	877
TfiI	GAWTC	4 cut(s)	431, 459, 604, 835
Tru1I	TTAA	2 cut(s)	306, 650
Tru9I	TTAA	2 cut(s)	306, 650
TscAI	CASTG	2 cut(s)	256, 460
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	5 cut(s)	5, 280, 283, 590, 786
Tsp45I	GTSAC	1 cut(s)	388
TspGWI	ACGGA	1 cut(s)	483
TspRI	CASTG	2 cut(s)	256, 460
VpaK11BI	GGWCC	1 cut(s)	129
XbaI	TCTAGA	1 cut(s)	794
XceI	RCATGY	1 cut(s)	534
XspI	CTAG	2 cut(s)	342, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.