pycom05g26810

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0007664
Physical Location & Seq
Forward (+)
27959236 .. 27963046
3811 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 3393 bp
ATGGAGCTTGAAAAAAGCAGTGACGGAACACGCGCCGCCGCATTCTCCTCCTCCTCCCCCACAAGCAACATGAAACCTACCCCCGCTGCTGCCAGACCCGACAAGTCAGTCGCTCACTACAGAGAGGACGCCAACCTCTTGGCCGAGTACGAGCAGTCTGCAGTCTCCGGTAAGTCCTTCAACTACACAAGGTCAGTGCTTTTTCCTCCGGATTCTGTCCCCGAGGAGCAAATCAGTGCTTACTTATCGAGAATCCAAAGGGGTTCTCTCGTCCAATCCTTTGGCTGTATGCTTGCAATTGAAGAACCCACTTTTCGAATTCTCGGTTTCAGTGAGAATTGCTATGAATTGCTGGGTTTGGATAAATTGGATAGTGTTTTCGAGTCAAATGAGTTAAAGGGTTTGATTGGGGTGGATTGTAGAACTCTGTTTACTCCTCCTTCCGCGGCTTCATTGACGAAAGCTGCTGCTTCGAGGGAGATTTCGCTGTTAAACCCGATTTGGGTGTATTCCAGGAGTACCCAGAAGCCATTTTATGCTATTTTGCATAGAATTGATGTGGGGATTATGGTTGATTTGGAGCCTGCTAGGTCTGATGATCCTGCATTGTCACTTGCAGGGGCCGTACAGTCACAGAAGCTCGCGGTTCGCGCAATTTCTAGGCTTCAGTCTCTCCCTGGAGGGGACATTGGTGTGTTGTGTGACACAGTTGTAGAAGATGTTCGGAAACTTACTGGATATGACAGAGTTATGGTTTATAAGTTCCATGACGATGATCACGGTGAGGTTGTGTCTGAAATTAGGAGGTCAGATTTGGAGTCTTATTTGGGTTTACATTACCCTGCCACGGATATCCCTCAAGCTGCCCGTTTCTTGTTCAAGCAGAATCGCGTGCGTATGATCTGCGATTGCAATGCGAATCCAGTTAAAGTCATTGAAAGTGAAGAACTGAAGCAACCTCTGTGCTTGGTCAATTCAACTCTCCGGTCTCCACATGGCTGCCACAGACAGTACATGGCGAACATGGGCTCGATTGCCTCGTTGGTGATGGCGGTTATTATCAATGGTAATGATTCAACGAAGCTTTGGGGGTTGGTGGTGTGCCACCATGCTTCCCCCCGCTATGTCCCTTTTCCTCTTCGCTACGCTTGCGAGTTTCTTATGCAGGCATTTGGCGTGCAAATCTACATGGAGCTTCAATTAGCAACGCAGTTGGCTGAGAAAAAGATTCTCAGAACACAAACCTTGCTTTGTGACATGCTCCTCCGTGATTCCCCATCCGGTATTGTGACCCAATCTCCGAGTATAATGAATCTCGTCAAGTGTGATGGGGCTGCATTGTACTATGGTGGGACATGCTGGTTGATGGGTGTAACTCCAACTGAATCACAGGTTAAAGATATAGCAGAGTGGCTGCTAAACAGTCATGGGGATTCCACCGGTCTGAGTACCGATAGTTTGGCGGAAGCTGGTTACCCCGGTGCACCTTTACTGGGCAATGCAGTTTGTGGTATGGCTACCGCAAGGGTCAGTTCAAAAGATTTCTTGTTTTGGTTCAGGTCCCACACGGCAGAGGAAGTTAAATGGGGAGGAGCTAAGCATCACCCAGGGGACAAGGATGACGGTGAAAGGATGCACCCGAGATCATCGTTTAAAGCTTTTCTTGAGATAGTAAAAACTAGAAGTTTGCCTTGGGAGATCTCTGAGATTAATGCCATCCACTCTTTGCAGCTCATCATGAGAGACTCGTTTCAGGATATCGTGGAAACTGGTTCGAAGGCAGTGCAACAGAGTGATGCTGAGATGCAGTTGCAGGGGATAGATGAACTCAGTTCCGTGGCATTTGAAATGGTTAAGTTGATTGAGACAGCTTCTGTTCCAATTTTCGGGGTTGATTCGGATGGTTTCATCAATGGATGGAACGCAAAAATAGCTGAGTTGACAGGATTACAAGATAGCGAAGCGATGGGGAAGTCCCTAGTTAATGAGATTGTTTATGAGGACTCGCGTGAAGCTGTTGAAAATCTTTTACGCAGAGCCTTACAAGGTGAGGAGGACAAGAACATTGAGCTAAAACTGAGAAATTTCGGGCTTTCACAGCATAACTCAGTTGTCTATATTGTCGCCAGCACTTGCACAAGTAGGAGTCCTGCAAAGAATGTTGTCGGTGTATGCTTTGTGGGTCAGGATATTACTTGTGAAAAGGTTGTTATGGAAAAATTCATCCGCTTGCAAGGGGATTACAAAGCAATCATACAAAGTCTTAACCCGTTGATTCCACCGATATTTGCATCTGACGAGAATGCCTGCTGCTCTGAATGGAATTCAGCCATGGAAAAGCTTACTGGTTGGACAAGAGATAACGTTATTGGTAAAACGCTTCCTGGGGAAATCTTTGGAGGTCTTTGTCGACTGAGAGGTCAAGATATACTGACTAAATTTATGATTATGTTGTACCAAGGAATCAGTGGTAAAGAGATTGAGAAGTTTCCGTTCGGGTTTTTTGATAGAAAGGGGAAGTTCGTTGAGGCGCTCTTAACAGCTAACAGGAGGACTGATGCAGGTGGGAATATAATTGGTTGTTTCTGTTTCCTGCAAATTTTTTTGCCTGACTTGCAGTCGGCCTTGGAAGGACGCATACAAGAGGATGGAGAATGCTTTTCGAAACTTAAGGAATTAACATACATGCGACAAGAGATGAAAAACGCCTTAAATGGTATTCAGTTTACCCACAGACTCCTTGAAAGTACAACTATTTCAGAATATCAGAAGCAATTCCTCGACACTAGCAATGCGTGTGAAAGACAAATCATGACAATCATCGACGATATAGATGTGAAGAGCATAGCCGAAGGTAGCGTGAAGCTGAACATGGAAGAATTTATGTTGGGAAGCGTAGTGGACGTCATTATTAGCCAATCAATGCTCTCGCTGAGGGAAAAGAATCTGCAGCTCTTTCATGAGATTCCAGAAGAAATTAAGTCACTATCTTTACATGGCGATCAAATCCGGCTTCAGCTGGTTTTGTCAGATTTCTTGCTCAATGTAGTGAATCACGCACCTTCCTCGAATGGCTGGGTCGAAATTAAAATTTCACCTGGTTTAAAGTTGATACAGGACGGCAACAATTACGTCCGCCTCCAGTTCAGAATGACACACCCCGGCCAGGGCCTTCCAACAGCGCTTGTACAGGATATGTTCGAGGGAGGAAACAGATGGACGACACAAGAAGGTCTCGGGCTAAATCTGTCACGAAAAATTCTGAATAGAATGAATGGTCAGGTGCAGTATGTTAGAGAGCACGATAAGTGTTACTTCCTCGTCAACATTGAACTTAAACACAAGAAAGAAAGGCAGAGGCTGTGTGTGTCTCATGAGAGCACAACGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

1131

Amino Acids

125.94

Weight (kDa)

5.63

Isoelectric Point (pI)

50.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_2 PF08446 80 - 196 2.4e-32 PAS fold
GAF PF01590 230 - 397 7.2e-18 GAF domain
PHY PF00360 412 - 585 1.8e-56 Phytochrome region
PAS PF00989 617 - 731 2.3e-25 PAS fold
PAS_4 PF08448 624 - 732 2.9e-09 PAS fold
PAS PF00989 747 - 866 6.3e-18 PAS fold
HisKA PF00512 889 - 949 5.6e-08 His Kinase A (phospho-acceptor) domain
HATPase_c PF02518 1000 - 1101 1.8e-12 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 759
AarI CACCTGC 1 cut(s) 2552
AasI GACNNNNNNGTC 2 cut(s) 107, 2418
AatII GACGTC 1 cut(s) 2907
Acc36I ACCTGC 1 cut(s) 2552
AccI GTMKAC 1 cut(s) 2410
AccII CGCG 6 cut(s) 33, 446, 644, 651, 891, 2008
AccIII TCCGGA 1 cut(s) 208
AclI AACGTT 1 cut(s) 2364
AclWI GGATC 1 cut(s) 593
AcoI YGGCCR 2 cut(s) 141, 3163
AcsI RAATTY 9 cut(s) 318, 2083, 2219, 2323, 2438, 2598, 2879, 3090, 3258
AcuI CTGAAG 3 cut(s) 650, 971, 2999
AcyI GRCGYC 2 cut(s) 129, 2904
AfaI GTAC 9 cut(s) 149, 520, 627, 1013, 1343, 1450, 2456, 2749, 3189
AfeI AGCGCT 1 cut(s) 3183
AfiI CCNNNNNNNGG 7 cut(s) 502, 682, 847, 1493, 1886, 3166, 3167
AflII CTTAAG 1 cut(s) 2669
AgeI ACCGGT 1 cut(s) 1439
AhdI GACNNNNNGTC 1 cut(s) 2617
AjnI CCWGG 6 cut(s) 512, 676, 1606, 2383, 3097, 3165
AjuI GAANNNNNNNTTGG 2 cut(s) 1675, 1707
Alw21I GWGCWC 3 cut(s) 1486, 3303, 3383
Alw26I GTCTC 7 cut(s) 169, 675, 993, 1737, 1859, 3239, 3375
Alw44I GTGCAC 1 cut(s) 1482
AlwI GGATC 1 cut(s) 593
AlwNI CAGNNNCTG 2 cut(s) 1874, 3361
Ama87I CYCGRG 3 cut(s) 221, 1639, 3236
Aor13HI TCCGGA 1 cut(s) 208
Aor51HI AGCGCT 1 cut(s) 3183
AoxI GGCC 5 cut(s) 141, 621, 2622, 3163, 3169
ApaLI GTGCAC 1 cut(s) 1482
ApoI RAATTY 9 cut(s) 318, 2083, 2219, 2323, 2438, 2598, 2879, 3090, 3258
AseI ATTAAT 1 cut(s) 1710
AsiGI ACCGGT 1 cut(s) 1439
Asp700I GAANNNNTTC 2 cut(s) 720, 2774
AspLEI GCGC 4 cut(s) 35, 653, 2533, 3184
AspS9I GGNCC 3 cut(s) 621, 1560, 3169
AsuC2I CCSGG 2 cut(s) 1479, 3162
AsuHPI GGTGA 6 cut(s) 794, 1057, 1595, 1637, 2060, 3087
AsuII TTCGAA 3 cut(s) 316, 1775, 2663
AvaI CYCGRG 3 cut(s) 221, 1639, 3236
AvaII GGWCC 1 cut(s) 1560
BaeGI GKGCMC 1 cut(s) 1486
BanII GRGCYC 1 cut(s) 1031
BarI GAAGNNNNNNTAC 2 cut(s) 2622, 2654
Bbv12I GWGCWC 3 cut(s) 1486, 3303, 3383
BbvCI CCTCAGC 1 cut(s) 2933
BceAI ACGGC 3 cut(s) 608, 1584, 3136
BcgI CGANNNNNNTGC 8 cut(s) 140, 174, 896, 930, 1765, 1799, 3048, 3082
BciT130I CCWGG 6 cut(s) 514, 678, 1608, 2385, 3099, 3167
BclI TGATCA 1 cut(s) 775
BcnI CCSGG 2 cut(s) 1479, 3162
BcoDI GTCTC 7 cut(s) 169, 675, 993, 1737, 1859, 3239, 3375
BfaI CTAG 5 cut(s) 588, 660, 1680, 1979, 2787
BfmI CTRYAG 3 cut(s) 118, 159, 2948
BfoI RGCGCY 2 cut(s) 2534, 3185
BfrI CTTAAG 1 cut(s) 2669
BfuAI ACCTGC 1 cut(s) 2552
BglII AGATCT 1 cut(s) 1698
BlpI GCTNAGC 1 cut(s) 1596
Bme1390I CCNGG 8 cut(s) 514, 678, 1479, 1608, 2385, 3099, 3162, 3167
Bme18I GGWCC 1 cut(s) 1560
BmeRI GACNNNNNGTC 1 cut(s) 2617
BmeT110I CYCGRG 3 cut(s) 221, 1639, 3236
BmgT120I GGNCC 3 cut(s) 621, 1560, 3169
BmiI GGNNCC 3 cut(s) 582, 622, 1562
BmrFI CCNGG 8 cut(s) 514, 678, 1479, 1608, 2385, 3099, 3162, 3167
BmrI ACTGGG 1 cut(s) 1502
BmsI GCATC 6 cut(s) 1609, 1623, 1786, 1794, 2300, 2548
BmuI ACTGGG 1 cut(s) 1502
BpmI CTGGAG 2 cut(s) 699, 3125
Bpu10I CCTNAGC 1 cut(s) 2933
Bpu1102I GCTNAGC 1 cut(s) 1596
Bpu14I TTCGAA 3 cut(s) 316, 1775, 2663
BpuEI CTTGAG 2 cut(s) 843, 1685
BpuMI CCSGG 2 cut(s) 1479, 3162
BsaHI GRCGYC 2 cut(s) 129, 2904
BsaI GGTCTC 2 cut(s) 993, 3239
BsaWI WCCGGW 5 cut(s) 167, 208, 984, 1280, 1439
BsaXI ACNNNNNCTCC 2 cut(s) 1282, 1312
Bsc4I CCNNNNNNNGG 7 cut(s) 502, 682, 847, 1493, 1886, 3166, 3167
Bse118I RCCGGY 1 cut(s) 1439
Bse1I ACTGG 6 cut(s) 739, 923, 1497, 1774, 2350, 3142
Bse3DI GCAATG 3 cut(s) 919, 1504, 2797
BseAI TCCGGA 1 cut(s) 208
BseBI CCWGG 6 cut(s) 514, 678, 1608, 2385, 3099, 3167
BseGI GGATG 8 cut(s) 1277, 1624, 1638, 1716, 1906, 1922, 2223, 2653
BseLI CCNNNNNNNGG 7 cut(s) 502, 682, 847, 1493, 1886, 3166, 3167
BseMI GCAATG 3 cut(s) 919, 1504, 2797
BseNI ACTGG 6 cut(s) 739, 923, 1497, 1774, 2350, 3142
BseRI GAGGAG 8 cut(s) 37, 40, 43, 239, 426, 1253, 1605, 2066
BseSI GKGCMC 1 cut(s) 1486
BseYI CCCAGC 2 cut(s) 352, 3075
BsgI GTGCAG 1 cut(s) 3305
Bsh1236I CGCG 6 cut(s) 33, 446, 644, 651, 891, 2008
BshFI GGCC 5 cut(s) 143, 623, 2624, 3165, 3171
BshTI ACCGGT 1 cut(s) 1439
BsiHKAI GWGCWC 3 cut(s) 1486, 3303, 3383
BsiHKCI CYCGRG 3 cut(s) 221, 1639, 3236
BsiSI CCGG 8 cut(s) 168, 209, 985, 1281, 1440, 1479, 3010, 3162
BslFI GGGAC 7 cut(s) 203, 698, 1112, 1366, 1546, 1625, 1960
BslI CCNNNNNNNGG 7 cut(s) 502, 682, 847, 1493, 1886, 3166, 3167
BsmAI GTCTC 7 cut(s) 169, 675, 993, 1737, 1859, 3239, 3375
BsmFI GGGAC 7 cut(s) 203, 698, 1112, 1366, 1546, 1625, 1960
BsmI GAATGC 3 cut(s) 41, 2308, 2660
BsnI GGCC 5 cut(s) 143, 623, 2624, 3165, 3171
Bso31I GGTCTC 2 cut(s) 993, 3239
BsoBI CYCGRG 3 cut(s) 221, 1639, 3236
Bsp119I TTCGAA 3 cut(s) 316, 1775, 2663
Bsp1286I GDGCHC 4 cut(s) 1031, 1486, 3303, 3383
Bsp13I TCCGGA 1 cut(s) 208
Bsp1407I TGTACA 1 cut(s) 3187
Bsp143I GATC 6 cut(s) 598, 775, 900, 1643, 1698, 3001
Bsp1720I GCTNAGC 1 cut(s) 1596
Bsp19I CCATGG 1 cut(s) 2331
BspANI GGCC 5 cut(s) 143, 623, 2624, 3165, 3171
BspEI TCCGGA 1 cut(s) 208
BspFNI CGCG 6 cut(s) 33, 446, 644, 651, 891, 2008
BspHI TCATGA 4 cut(s) 1737, 2811, 2959, 3373
BspLI GGNNCC 3 cut(s) 582, 622, 1562
BspMAI CTGCAG 2 cut(s) 163, 2952
BspMI ACCTGC 1 cut(s) 2552
BspPI GGATC 1 cut(s) 593
BspQI GCTCTTC 1 cut(s) 2834
BspT104I TTCGAA 3 cut(s) 316, 1775, 2663
BspTI CTTAAG 1 cut(s) 2669
BspTNI GGTCTC 2 cut(s) 993, 3239
BsrDI GCAATG 3 cut(s) 919, 1504, 2797
BsrFI RCCGGY 1 cut(s) 1439
BsrGI TGTACA 1 cut(s) 3187
BsrI ACTGG 6 cut(s) 739, 923, 1497, 1774, 2350, 3142
BssAI RCCGGY 1 cut(s) 1439
BssMI GATC 6 cut(s) 598, 775, 900, 1643, 1698, 3001
BssNI GRCGYC 2 cut(s) 129, 2904
BssT1I CCWWGG 4 cut(s) 1691, 2331, 2458, 2625
Bst2UI CCWGG 6 cut(s) 514, 678, 1608, 2385, 3099, 3167
Bst4CI ACNGT 6 cut(s) 630, 709, 782, 1011, 1424, 1625
Bst6I CTCTTC 2 cut(s) 1143, 2834
BstACI GRCGYC 2 cut(s) 129, 2904
BstAFI CTTAAG 1 cut(s) 2669
BstAUI TGTACA 1 cut(s) 3187
BstBI TTCGAA 3 cut(s) 316, 1775, 2663
BstDSI CCRYGG 4 cut(s) 444, 846, 1836, 2331
BstEII GGTNACC 1 cut(s) 1472
BstF5I GGATG 8 cut(s) 1277, 1624, 1638, 1716, 1906, 1922, 2223, 2653
BstFNI CGCG 6 cut(s) 33, 446, 644, 651, 891, 2008
BstH2I RGCGCY 2 cut(s) 2534, 3185
BstHHI GCGC 4 cut(s) 35, 653, 2533, 3184
BstKTI GATC 6 cut(s) 601, 778, 903, 1646, 1701, 3004
BstMAI GTCTC 7 cut(s) 169, 675, 993, 1737, 1859, 3239, 3375
BstMBI GATC 6 cut(s) 598, 775, 900, 1643, 1698, 3001
BstMWI GCNNNNNNNGC 5 cut(s) 650, 1149, 1931, 2098, 2614
BstNI CCWGG 6 cut(s) 514, 678, 1608, 2385, 3099, 3167
BstNSI RCATGY 3 cut(s) 1261, 1359, 2689
BstPI GGTNACC 1 cut(s) 1472
BstSCI CCNGG 8 cut(s) 512, 676, 1477, 1606, 2383, 3097, 3160, 3165
BstSFI CTRYAG 3 cut(s) 118, 159, 2948
BstSLI GKGCMC 1 cut(s) 1486
BstUI CGCG 6 cut(s) 33, 446, 644, 651, 891, 2008
BstX2I RGATCY 1 cut(s) 1698
BstXI CCANNNNNNTGG 2 cut(s) 139, 281
BstYI RGATCY 1 cut(s) 1698
BsuRI GGCC 5 cut(s) 143, 623, 2624, 3165, 3171
BtgI CCRYGG 4 cut(s) 444, 846, 1836, 2331
BtgZI GCGATG 1 cut(s) 1979
BtsCI GGATG 8 cut(s) 1277, 1624, 1638, 1716, 1906, 1922, 2223, 2653
BtsI GCAGTG 2 cut(s) 25, 1788
BtsIMutI CAGTG 6 cut(s) 25, 201, 241, 337, 1788, 2473
BveI ACCTGC 1 cut(s) 2552
CaiI CAGNNNCTG 2 cut(s) 1874, 3361
CciI TCATGA 4 cut(s) 1737, 2811, 2959, 3373
CfoI GCGC 4 cut(s) 35, 653, 2533, 3184
Cfr10I RCCGGY 1 cut(s) 1439
Cfr13I GGNCC 3 cut(s) 621, 1560, 3169
Cfr42I CCGCGG 1 cut(s) 447
CseI GACGC 2 cut(s) 137, 2643
CsiI ACCWGGT 1 cut(s) 3097
Csp6I GTAC 9 cut(s) 148, 519, 626, 1012, 1342, 1449, 2455, 2748, 3188
CspAI ACCGGT 1 cut(s) 1439
CviQI GTAC 9 cut(s) 148, 519, 626, 1012, 1342, 1449, 2455, 2748, 3188
DpnI GATC 6 cut(s) 600, 777, 902, 1645, 1700, 3003
DpnII GATC 6 cut(s) 598, 775, 900, 1643, 1698, 3001
DraI TTTAAA 2 cut(s) 1654, 3105
DrdI GACNNNNNNGTC 2 cut(s) 107, 2418
DriI GACNNNNNGTC 1 cut(s) 2617
DseDI GACNNNNNNGTC 2 cut(s) 107, 2418
EaeI YGGCCR 2 cut(s) 141, 3163
Eam1104I CTCTTC 2 cut(s) 1143, 2834
Eam1105I GACNNNNNGTC 1 cut(s) 2617
EarI CTCTTC 2 cut(s) 1143, 2834
EciI GGCGGA 2 cut(s) 1478, 3125
Eco130I CCWWGG 4 cut(s) 1691, 2331, 2458, 2625
Eco24I GRGCYC 1 cut(s) 1031
Eco31I GGTCTC 2 cut(s) 993, 3239
Eco32I GATATC 2 cut(s) 853, 1759
Eco47I GGWCC 1 cut(s) 1560
Eco47III AGCGCT 1 cut(s) 3183
Eco57I CTGAAG 3 cut(s) 650, 971, 2999
Eco88I CYCGRG 3 cut(s) 221, 1639, 3236
Eco91I GGTNACC 1 cut(s) 1472
EcoO109I RGGNCCY 2 cut(s) 1560, 3169
EcoO65I GGTNACC 1 cut(s) 1472
EcoRI GAATTC 2 cut(s) 318, 2323
EcoRII CCWGG 6 cut(s) 512, 676, 1606, 2383, 3097, 3165
EcoRV GATATC 2 cut(s) 853, 1759
EcoT14I CCWWGG 4 cut(s) 1691, 2331, 2458, 2625
EcoT38I GRGCYC 1 cut(s) 1031
ErhI CCWWGG 4 cut(s) 1691, 2331, 2458, 2625
FalI AAGNNNNNCTT 6 cut(s) 1647, 1679, 1675, 1707, 3299, 3331
FaqI GGGAC 7 cut(s) 203, 698, 1112, 1366, 1546, 1625, 1960
FauI CCCGC 2 cut(s) 91, 1127
FbaI TGATCA 1 cut(s) 775
FblI GTMKAC 1 cut(s) 2410
FokI GGATG 8 cut(s) 1264, 1631, 1645, 1703, 1913, 1929, 2210, 2660
FriOI GRGCYC 1 cut(s) 1031
FspBI CTAG 5 cut(s) 588, 660, 1680, 1979, 2787
GlaI GCGC 4 cut(s) 34, 652, 2532, 3183
GsaI CCCAGC 2 cut(s) 356, 3079
GsuI CTGGAG 2 cut(s) 699, 3125
HaeII RGCGCY 2 cut(s) 2534, 3185
HaeIII GGCC 5 cut(s) 143, 623, 2624, 3165, 3171
HapII CCGG 8 cut(s) 168, 209, 985, 1281, 1440, 1479, 3010, 3162
HgaI GACGC 2 cut(s) 137, 2643
HhaI GCGC 4 cut(s) 35, 653, 2533, 3184
Hin1I GRCGYC 2 cut(s) 129, 2904
Hin6I GCGC 4 cut(s) 33, 651, 2531, 3182
HinP1I GCGC 4 cut(s) 33, 651, 2531, 3182
HincII GTYRAC 3 cut(s) 1941, 2411, 3325
HindII GTYRAC 3 cut(s) 1941, 2411, 3325
HindIII AAGCTT 3 cut(s) 1082, 1656, 2339
HpaII CCGG 8 cut(s) 168, 209, 985, 1281, 1440, 1479, 3010, 3162
HphI GGTGA 6 cut(s) 794, 1057, 1595, 1637, 2060, 3087
Hpy166II GTNNAC 8 cut(s) 432, 833, 1484, 1941, 2411, 2727, 2902, 3325
Hpy8I GTNNAC 8 cut(s) 432, 833, 1484, 1941, 2411, 2727, 2902, 3325
Hpy99I CGWCG 1 cut(s) 2828
HpyAV CCTTC 8 cut(s) 187, 450, 1771, 2624, 2846, 3072, 3182, 3224
HpyCH4III ACNGT 6 cut(s) 630, 709, 782, 1011, 1424, 1625
HpyCH4IV ACGT 3 cut(s) 2364, 2904, 3132
HpyF10VI GCNNNNNNNGC 5 cut(s) 650, 1149, 1931, 2098, 2614
HpySE526I ACGT 3 cut(s) 2364, 2904, 3132
Hsp92I GRCGYC 2 cut(s) 129, 2904
HspAI GCGC 4 cut(s) 33, 651, 2531, 3182
Kpn2I TCCGGA 1 cut(s) 208
Ksp22I TGATCA 1 cut(s) 775
KspI CCGCGG 1 cut(s) 447
Kzo9I GATC 6 cut(s) 598, 775, 900, 1643, 1698, 3001
LguI GCTCTTC 1 cut(s) 2834
LmnI GCTCC 6 cut(s) 4, 226, 580, 1192, 1266, 1592
LweI GCATC 6 cut(s) 1609, 1623, 1786, 1794, 2300, 2548
MabI ACCWGGT 1 cut(s) 3097
MaeI CTAG 5 cut(s) 588, 660, 1680, 1979, 2787
MaeII ACGT 3 cut(s) 2364, 2904, 3132
MalI GATC 6 cut(s) 600, 777, 902, 1645, 1700, 3003
MboI GATC 6 cut(s) 598, 775, 900, 1643, 1698, 3001
MboII GAAGA 7 cut(s) 314, 728, 956, 1130, 2851, 2888, 2984
MfeI CAATTG 1 cut(s) 297
MflI RGATCY 1 cut(s) 1698
MhlI GDGCHC 4 cut(s) 1031, 1486, 3303, 3383
MlyI GAGTC 6 cut(s) 392, 827, 1739, 1997, 2155, 2730
MmeI TCCRAC 3 cut(s) 1403, 2330, 3200
MroI TCCGGA 1 cut(s) 208
MroXI GAANNNNTTC 2 cut(s) 720, 2774
MslI CAYNNNNRTG 2 cut(s) 692, 771
MspA1I CMGCKG 3 cut(s) 86, 446, 3019
MspCI CTTAAG 1 cut(s) 2669
MspI CCGG 8 cut(s) 168, 209, 985, 1281, 1440, 1479, 3010, 3162
MspR9I CCNGG 8 cut(s) 514, 678, 1479, 1608, 2385, 3099, 3162, 3167
MunI CAATTG 1 cut(s) 297
Mva1269I GAATGC 3 cut(s) 41, 2308, 2660
MvaI CCWGG 6 cut(s) 514, 678, 1608, 2385, 3099, 3167
MvnI CGCG 6 cut(s) 33, 446, 644, 651, 891, 2008
MwoI GCNNNNNNNGC 5 cut(s) 650, 1149, 1931, 2098, 2614
NciI CCSGG 2 cut(s) 1479, 3162
NcoI CCATGG 1 cut(s) 2331
NdeII GATC 6 cut(s) 598, 775, 900, 1643, 1698, 3001
NlaIV GGNNCC 3 cut(s) 582, 622, 1562
NmeAIII GCCGAG 1 cut(s) 169
NmuCI GTSAC 8 cut(s) 20, 609, 630, 701, 1253, 1288, 2982, 3249
NspI RCATGY 3 cut(s) 1261, 1359, 2689
NspV TTCGAA 3 cut(s) 316, 1775, 2663
PagI TCATGA 4 cut(s) 1737, 2811, 2959, 3373
PaqCI CACCTGC 1 cut(s) 2552
PasI CCCWGGG 1 cut(s) 1607
PciSI GCTCTTC 1 cut(s) 2834
PcsI WCGNNNNNNNCGW 1 cut(s) 1037
PctI GAATGC 3 cut(s) 41, 2308, 2660
PdmI GAANNNNTTC 2 cut(s) 720, 2774
PfoI TCCNGGA 1 cut(s) 512
PinAI ACCGGT 1 cut(s) 1439
PleI GAGTC 6 cut(s) 391, 826, 1739, 1997, 2154, 2730
PpsI GAGTC 6 cut(s) 391, 826, 1739, 1997, 2154, 2730
PpuMI RGGWCCY 1 cut(s) 1560
PshBI ATTAAT 1 cut(s) 1710
PsiI TTATAA 1 cut(s) 759
Psp1406I AACGTT 1 cut(s) 2364
Psp5II RGGWCCY 1 cut(s) 1560
Psp6I CCWGG 6 cut(s) 512, 676, 1606, 2383, 3097, 3165
PspEI GGTNACC 1 cut(s) 1472
PspFI CCCAGC 2 cut(s) 352, 3075
PspGI CCWGG 6 cut(s) 512, 676, 1606, 2383, 3097, 3165
PspN4I GGNNCC 3 cut(s) 582, 622, 1562
PspPI GGNCC 3 cut(s) 621, 1560, 3169
PspPPI RGGWCCY 1 cut(s) 1560
PsrI GAACNNNNNNTAC 4 cut(s) 415, 447, 705, 737
PstI CTGCAG 2 cut(s) 163, 2952
PstNI CAGNNNCTG 2 cut(s) 1874, 3361
PsuI RGATCY 1 cut(s) 1698
PvuII CAGCTG 1 cut(s) 3019
RsaI GTAC 9 cut(s) 149, 520, 627, 1013, 1343, 1450, 2456, 2749, 3189
RsaNI GTAC 9 cut(s) 148, 519, 626, 1012, 1342, 1449, 2455, 2748, 3188
RseI CAYNNNNRTG 2 cut(s) 692, 771
SacII CCGCGG 1 cut(s) 447
SalI GTCGAC 1 cut(s) 2409
SapI GCTCTTC 1 cut(s) 2834
Sau3AI GATC 6 cut(s) 598, 775, 900, 1643, 1698, 3001
Sau96I GGNCC 3 cut(s) 621, 1560, 3169
SchI GAGTC 6 cut(s) 392, 827, 1739, 1997, 2155, 2730
ScrFI CCNGG 8 cut(s) 514, 678, 1479, 1608, 2385, 3099, 3162, 3167
SduI GDGCHC 4 cut(s) 1031, 1486, 3303, 3383
SexAI ACCWGGT 1 cut(s) 3097
SfaNI GCATC 6 cut(s) 1609, 1623, 1786, 1794, 2300, 2548
SfcI CTRYAG 3 cut(s) 118, 159, 2948
Sfr303I CCGCGG 1 cut(s) 447
SfuI TTCGAA 3 cut(s) 316, 1775, 2663
SgrBI CCGCGG 1 cut(s) 447
SinI GGWCC 1 cut(s) 1560
SmiMI CAYNNNNRTG 2 cut(s) 692, 771
SmlI CTYRAG 3 cut(s) 858, 1664, 2669
SmoI CTYRAG 3 cut(s) 858, 1664, 2669
SspMI CTAG 5 cut(s) 588, 660, 1680, 1979, 2787
StyD4I CCNGG 8 cut(s) 512, 676, 1477, 1606, 2383, 3097, 3160, 3165
StyI CCWWGG 4 cut(s) 1691, 2331, 2458, 2625
TaaI ACNGT 6 cut(s) 630, 709, 782, 1011, 1424, 1625
TaiI ACGT 3 cut(s) 2367, 2907, 3135
TatI WGTACW 4 cut(s) 1011, 1341, 2747, 3187
TauI GCSGC 3 cut(s) 38, 41, 449
TscAI CASTG 6 cut(s) 25, 201, 241, 337, 1788, 2473
TseFI GTSAC 8 cut(s) 20, 609, 630, 701, 1253, 1288, 2982, 3249
Tsp45I GTSAC 8 cut(s) 20, 609, 630, 701, 1253, 1288, 2982, 3249
TspGWI ACGGA 5 cut(s) 39, 863, 1256, 1825, 2481
TspRI CASTG 6 cut(s) 25, 201, 241, 337, 1788, 2473
Vha464I CTTAAG 1 cut(s) 2669
VneI GTGCAC 1 cut(s) 1482
VpaK11BI GGWCC 1 cut(s) 1560
VspI ATTAAT 1 cut(s) 1710
XapI RAATTY 9 cut(s) 318, 2083, 2219, 2323, 2438, 2598, 2879, 3090, 3258
XceI RCATGY 3 cut(s) 1261, 1359, 2689
XcmI CCANNNNNNNNNTGG 1 cut(s) 2465
XmiI GTMKAC 1 cut(s) 2410
XmnI GAANNNNTTC 2 cut(s) 720, 2774
XspI CTAG 5 cut(s) 588, 660, 1680, 1979, 2787
ZraI GACGTC 1 cut(s) 2905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.