Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001237

Physical Location & Seq

Genomic Coordinates Reverse (-)

28220246 .. 28222527

Gene Structure 2282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g27180.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGCTCAAAAGAGATTAGTTAAGCAAGTAGATAATGTCAATGTGACAAGTAACGTCTTAGAGATCCGGTTCTACTGGGCTGGAAAAGGGACAACGAAGATTCCAGAGAAAGGACACTATGGTCCCCTCATATCTGCTGTCTCTGTGGTTTCCATCTTTAAACCGTGTACAACTGGTGAAACTGTGCGAACCATTTACATCATTGCCGGTGTTGTTGGGGGATGCCTAACACTATTCGTACTGGCAATCCTTTGGTGGAAAGGATGTTTGGGAGGAAAAAGGGGGAGACAACAAGATCTTGGACAAGATATGCAGACGAGGACTTTTACTTTGAAACAAATAAAAGCTGCCACTAACAACTTTGATTCTGCAAGAAAGATTGGAGAAGGTGGTTTTGGTCCTGTCTACAAGGGTCAATTACCTGACGGTTCATTGATAGCAGTTAAGCAGCTCTCATCCAATTCAAAGCAAGGAAATCGCGAATTTTTAAATGAGATGGGCATGATAACTTGCTTGCAACACCCGAATCTAGTGACACTGCATGGATGCTGTATTGAAAGGGATCAATTATTACTGGTTTACGAATACATGGAAAACAATAGTCTTGCGCATGCCTTATTCGACCCGGAGATCCGAGTTAAACTCGACTGGCCTACACGGCTTAAGATTTGTACCGGGATAGCCAGAGGTTTAGCTTTTCTGCATGAAGAATCAAGACTCAAGATTGTTCACAGGGACATAAAAGCTACCAATGTGCTGCTGGATGGGGATTTGAACCCTAAAATATCGGACTTTGGATTGGCTAAACTTTATGGTGAAGAGAGCACACATGTCAGCACCAAAGTTGCAGGAACCATAGGATATATGGCACCAGAGTATGCGCTATGGGGTCACTTGACCTACATGGCAGATGTTTACAGTTTCGGAGTTGTTGCGTTGGAGATTGCCAGTGGGAAGAAGAACAGCTATGTACCAACTAACACTTGTGTCTGTCTCCTAGACTGGGCCTATCAGTTGCAACAAAGTGGAAACTTGAAGGAGCTGATAGATGTGAGCTTAGGGAGTGAAGTCAATTACAAAGAAGCAGAAGTAATGATTAAAGTCGGTTTGCTGTGCACGAATGTTTCTCCGTCACTTAGGCCTACCATGTCCGAGGTGGTGAGCATGCTTGAAGGACGAACAACAGTCCCGGACACAAAGCAAGAAGCGATAAATTATACTGAAGATTGGAGGCTCAAGGCCGTGAGAGATCGACATCATCAAAGCCAAACACAAAGTTCAAGTGGAAGCCAACCCGAGAGTTTGGTAACTTCTTACACACCTTACTCTTCCTCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

447

Amino Acids

49.36

Weight (kDa)

8.39

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29750 AT1G29750 AT1G29750
fragaria_vesca	FvH4_3g07010 FvH4_3g07010 FvH4_3g07045 FvH4_3g07045 FvH4_3g07045 FvH4_3g07045 FvH4_3g07045 FvH4_3g07045
malus_domestica	MD00G1006700.v1.1 MD00G1006800.v1.1 MD00G1006900.v1.1 MD00G1007000.v1.1 MD10G1273400.v1.1 MD10G1273600.v1.1
prunus_persica	Prupe.4G069100_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1
pyrus_communis	pycom05g27170 pycom05g27180 pycom05g27210 pycom05g27220 pycom10g22820 pycom10g22840
rosa_chinensis	RchiOBHm_Chr5g0012071 RchiOBHm_Chr5g0012081 RchiOBHm_Chr5g0012091 RchiOBHm_Chr5g0012101
rosa_laevigata	RLG00000031884 RLG00000031885 RLG00000031889
rosa_multiflora	Rmu_sc0002519.1_g000010 Rmu_sc0002519.1_g000013 Rmu_sc0008172.1_g000001 Rmu_sc0009761.1_g000005
rosa_roxburghii	Rroxscaffold_1G00064490 Rroxscaffold_1G00064500 Rroxscaffold_1G00064510
rosa_rugosa	Rorug05G0000100 Rorug05G0000200 Rorug05G0000200
rosa_samantha	Rh5AG092900 Rh5BG089200 Rh5CG102700
rosa_wichuraiana	Rw5G008110 Rw5G008120 Rw5G008140 Rw5G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	120
Acc16I	TGCGCA	1 cut(s)	609
AccB1I	GGYRCC	1 cut(s)	868
AccI	GTMKAC	1 cut(s)	405
AccII	CGCG	1 cut(s)	480
AclWI	GGATC	3 cut(s)	58, 570, 625
AcsI	RAATTY	1 cut(s)	482
AcuI	CTGAAG	1 cut(s)	1242
AfaI	GTAC	4 cut(s)	169, 240, 673, 972
AfiI	CCNNNNNNNGG	2 cut(s)	110, 1003
AflII	CTTAAG	1 cut(s)	662
AflIII	ACRYGT	1 cut(s)	829
AgsI	TTSAA	7 cut(s)	334, 465, 557, 775, 1036, 1172, 1281
AjuI	GAANNNNNNNTTGG	4 cut(s)	251, 283, 378, 410
AluBI	AGCT	7 cut(s)	347, 451, 695, 746, 966, 1042, 1056
AluI	AGCT	7 cut(s)	347, 451, 695, 746, 966, 1042, 1056
Alw21I	GWGCWC	2 cut(s)	827, 1118
Alw26I	GTCTC	3 cut(s)	145, 280, 998
Alw44I	GTGCAC	1 cut(s)	1114
AlwI	GGATC	3 cut(s)	58, 570, 625
Ama87I	CYCGRG	1 cut(s)	1295
AoxI	GGCC	4 cut(s)	650, 1005, 1139, 1239
ApaLI	GTGCAC	1 cut(s)	1114
ApeKI	GCWGC	3 cut(s)	347, 448, 757
ApoI	RAATTY	1 cut(s)	482
ArsI	GACNNNNNNTTYG	2 cut(s)	313, 345
AspLEI	GCGC	2 cut(s)	610, 883
AspS9I	GGNCC	3 cut(s)	122, 398, 1005
AsuC2I	CCSGG	3 cut(s)	626, 676, 1190
AsuHPI	GGTGA	3 cut(s)	188, 827, 1171
AvaI	CYCGRG	1 cut(s)	1295
AvaII	GGWCC	2 cut(s)	122, 398
BaeGI	GKGCMC	1 cut(s)	1118
BanI	GGYRCC	1 cut(s)	868
Bbv12I	GWGCWC	2 cut(s)	827, 1118
BbvI	GCAGC	3 cut(s)	334, 460, 744
BccI	CCATC	3 cut(s)	161, 490, 758
BceAI	ACGGC	2 cut(s)	674, 1226
BcgI	CGANNNNNNTGC	2 cut(s)	458, 492
BcnI	CCSGG	3 cut(s)	626, 676, 1190
BcoDI	GTCTC	3 cut(s)	145, 280, 998
BfaI	CTAG	2 cut(s)	530, 998
BfrI	CTTAAG	1 cut(s)	662
BglI	GCCNNNNNGGC	1 cut(s)	658
BglII	AGATCT	1 cut(s)	295
BisI	GCNGC	3 cut(s)	348, 449, 758
BlsI	GCNGC	3 cut(s)	349, 450, 759
Bme1390I	CCNGG	3 cut(s)	626, 676, 1190
Bme18I	GGWCC	2 cut(s)	122, 398
BmeT110I	CYCGRG	1 cut(s)	1295
BmgT120I	GGNCC	3 cut(s)	122, 398, 1005
BmiI	GGNNCC	3 cut(s)	124, 853, 870
BmrFI	CCNGG	3 cut(s)	626, 676, 1190
BmrI	ACTGGG	2 cut(s)	85, 1012
BmsI	GCATC	2 cut(s)	212, 536
BmuI	ACTGGG	2 cut(s)	85, 1012
BplI	GAGNNNNNCTC	2 cut(s)	627, 659
Bpu10I	CCTNAGC	1 cut(s)	1057
BpuEI	CTTGAG	2 cut(s)	704, 1220
BpuMI	CCSGG	3 cut(s)	626, 676, 1190
BsaBI	GATNNNNATC	1 cut(s)	1254
BsaJI	CCNNGG	1 cut(s)	1152
BsaWI	WCCGGW	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 1003
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	7 cut(s)	80, 178, 246, 579, 653, 948, 1007
Bse3DI	GCAATG	1 cut(s)	201
Bse8I	GATNNNNATC	1 cut(s)	1254
BseDI	CCNNGG	1 cut(s)	1152
BseGI	GGATG	5 cut(s)	227, 269, 455, 551, 769
BseJI	GATNNNNATC	1 cut(s)	1254
BseLI	CCNNNNNNNGG	2 cut(s)	110, 1003
BseMI	GCAATG	1 cut(s)	201
BseNI	ACTGG	7 cut(s)	80, 178, 246, 579, 653, 948, 1007
BseSI	GKGCMC	1 cut(s)	1118
BseXI	GCAGC	3 cut(s)	334, 460, 744
Bsh1236I	CGCG	1 cut(s)	480
BshFI	GGCC	4 cut(s)	652, 1007, 1141, 1241
BshNI	GGYRCC	1 cut(s)	868
BsiHKAI	GWGCWC	2 cut(s)	827, 1118
BsiHKCI	CYCGRG	1 cut(s)	1295
BsiSI	CCGG	5 cut(s)	67, 207, 626, 675, 1190
BslFI	GGGAC	4 cut(s)	103, 108, 749, 1172
BslI	CCNNNNNNNGG	2 cut(s)	110, 1003
BsmAI	GTCTC	3 cut(s)	145, 280, 998
BsmFI	GGGAC	4 cut(s)	103, 108, 749, 1172
BsnI	GGCC	4 cut(s)	652, 1007, 1141, 1241
BsoBI	CYCGRG	1 cut(s)	1295
Bsp1286I	GDGCHC	2 cut(s)	827, 1118
Bsp1407I	TGTACA	1 cut(s)	167
Bsp143I	GATC	5 cut(s)	63, 295, 562, 630, 1249
Bsp68I	TCGCGA	1 cut(s)	480
BspANI	GGCC	4 cut(s)	652, 1007, 1141, 1241
BspFNI	CGCG	1 cut(s)	480
BspLI	GGNNCC	3 cut(s)	124, 853, 870
BspPI	GGATC	3 cut(s)	58, 570, 625
BspT107I	GGYRCC	1 cut(s)	868
BspTI	CTTAAG	1 cut(s)	662
BsrDI	GCAATG	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	206
BsrGI	TGTACA	1 cut(s)	167
BsrI	ACTGG	7 cut(s)	80, 178, 246, 579, 653, 948, 1007
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	1152
BssMI	GATC	5 cut(s)	63, 295, 562, 630, 1249
Bst4CI	ACNGT	5 cut(s)	165, 184, 428, 920, 1186
Bst6I	CTCTTC	2 cut(s)	813, 1333
BstAFI	CTTAAG	1 cut(s)	662
BstAUI	TGTACA	1 cut(s)	167
BstC8I	GCNNGC	3 cut(s)	515, 612, 1166
BstDEI	CTNAG	3 cut(s)	58, 1057, 1136
BstF5I	GGATG	5 cut(s)	227, 269, 455, 551, 769
BstFNI	CGCG	1 cut(s)	480
BstHHI	GCGC	2 cut(s)	610, 883
BstKTI	GATC	5 cut(s)	66, 298, 565, 633, 1252
BstMAI	GTCTC	3 cut(s)	145, 280, 998
BstMBI	GATC	5 cut(s)	63, 295, 562, 630, 1249
BstMWI	GCNNNNNNNGC	1 cut(s)	658
BstNSI	RCATGY	3 cut(s)	614, 833, 1168
BstSCI	CCNGG	3 cut(s)	624, 674, 1188
BstSLI	GKGCMC	1 cut(s)	1118
BstUI	CGCG	1 cut(s)	480
BstV1I	GCAGC	3 cut(s)	334, 460, 744
BstX2I	RGATCY	3 cut(s)	63, 295, 630
BstYI	RGATCY	3 cut(s)	63, 295, 630
BsuRI	GGCC	4 cut(s)	652, 1007, 1141, 1241
BtsCI	GGATG	5 cut(s)	227, 269, 455, 551, 769
BtsI	GCAGTG	1 cut(s)	536
BtsIMutI	CAGTG	2 cut(s)	536, 955
BtuMI	TCGCGA	1 cut(s)	480
Cac8I	GCNNGC	3 cut(s)	515, 612, 1166
CfoI	GCGC	2 cut(s)	610, 883
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	3 cut(s)	122, 398, 1005
Csp6I	GTAC	4 cut(s)	168, 239, 672, 971
CviQI	GTAC	4 cut(s)	168, 239, 672, 971
DdeI	CTNAG	3 cut(s)	58, 1057, 1136
DpnI	GATC	5 cut(s)	65, 297, 564, 632, 1251
DpnII	GATC	5 cut(s)	63, 295, 562, 630, 1249
DraI	TTTAAA	2 cut(s)	160, 489
DrdI	GACNNNNNNGTC	1 cut(s)	120
DseDI	GACNNNNNNGTC	1 cut(s)	120
Eam1104I	CTCTTC	2 cut(s)	813, 1333
EarI	CTCTTC	2 cut(s)	813, 1333
Eco147I	AGGCCT	1 cut(s)	1141
Eco47I	GGWCC	2 cut(s)	122, 398
Eco57I	CTGAAG	1 cut(s)	1242
Eco88I	CYCGRG	1 cut(s)	1295
FaqI	GGGAC	4 cut(s)	103, 108, 749, 1172
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	3 cut(s)	348, 449, 758
FokI	GGATG	5 cut(s)	234, 276, 442, 558, 776
Fsp4HI	GCNGC	3 cut(s)	348, 449, 758
FspBI	CTAG	2 cut(s)	530, 998
FspI	TGCGCA	1 cut(s)	609
GlaI	GCGC	2 cut(s)	609, 882
GluI	GCNGC	3 cut(s)	348, 449, 758
HaeIII	GGCC	4 cut(s)	652, 1007, 1141, 1241
HapII	CCGG	5 cut(s)	67, 207, 626, 675, 1190
HhaI	GCGC	2 cut(s)	610, 883
Hin6I	GCGC	2 cut(s)	608, 881
HinP1I	GCGC	2 cut(s)	608, 881
HinfI	GANTC	5 cut(s)	100, 365, 526, 710, 717
HpaII	CCGG	5 cut(s)	67, 207, 626, 675, 1190
HphI	GGTGA	3 cut(s)	188, 827, 1171
Hpy166II	GTNNAC	6 cut(s)	168, 406, 580, 730, 916, 1116
Hpy188I	TCNGA	4 cut(s)	635, 790, 926, 1153
Hpy188III	TCNNGA	4 cut(s)	104, 479, 714, 721
Hpy8I	GTNNAC	6 cut(s)	168, 406, 580, 730, 916, 1116
HpyAV	CCTTC	3 cut(s)	380, 1030, 1166
HpyCH4III	ACNGT	5 cut(s)	165, 184, 428, 920, 1186
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	8 cut(s)	313, 371, 517, 541, 703, 848, 1018, 1116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	658
HpyF3I	CTNAG	3 cut(s)	58, 1057, 1136
HpySE526I	ACGT	1 cut(s)	54
HspAI	GCGC	2 cut(s)	608, 881
Kzo9I	GATC	5 cut(s)	63, 295, 562, 630, 1249
LmnI	GCTCC	1 cut(s)	1039
Lsp1109I	GCAGC	3 cut(s)	334, 460, 744
LweI	GCATC	2 cut(s)	212, 536
MaeI	CTAG	2 cut(s)	530, 998
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	6 cut(s)	43, 50, 532, 890, 1131, 1306
MalI	GATC	5 cut(s)	65, 297, 564, 632, 1251
MboI	GATC	5 cut(s)	63, 295, 562, 630, 1249
MboII	GAAGA	7 cut(s)	109, 719, 830, 967, 970, 1235, 1320
MflI	RGATCY	3 cut(s)	63, 295, 630
MhlI	GDGCHC	2 cut(s)	827, 1118
MluCI	AATT	6 cut(s)	416, 460, 482, 566, 1072, 1213
MlyI	GAGTC	1 cut(s)	711
MmeI	TCCRAC	1 cut(s)	918
MnlI	CCTC	6 cut(s)	137, 266, 312, 680, 1147, 1224
MseI	TTAA	7 cut(s)	21, 159, 444, 488, 639, 663, 1098
MspCI	CTTAAG	1 cut(s)	662
MspI	CCGG	5 cut(s)	67, 207, 626, 675, 1190
MspR9I	CCNGG	3 cut(s)	626, 676, 1190
MvnI	CGCG	1 cut(s)	480
MwoI	GCNNNNNNNGC	1 cut(s)	658
NciI	CCSGG	3 cut(s)	626, 676, 1190
NdeII	GATC	5 cut(s)	63, 295, 562, 630, 1249
NlaIV	GGNNCC	3 cut(s)	124, 853, 870
NmuCI	GTSAC	4 cut(s)	43, 532, 890, 1131
NruI	TCGCGA	1 cut(s)	480
NsbI	TGCGCA	1 cut(s)	609
NspI	RCATGY	3 cut(s)	614, 833, 1168
PaeI	GCATGC	2 cut(s)	614, 1168
PceI	AGGCCT	1 cut(s)	1141
PciI	ACATGT	1 cut(s)	829
PfeI	GAWTC	4 cut(s)	100, 365, 526, 710
PfoI	TCCNGGA	1 cut(s)	1188
PkrI	GCNGC	3 cut(s)	349, 450, 759
PleI	GAGTC	1 cut(s)	711
PpsI	GAGTC	1 cut(s)	711
PscI	ACATGT	1 cut(s)	829
PspN4I	GGNNCC	3 cut(s)	124, 853, 870
PspPI	GGNCC	3 cut(s)	122, 398, 1005
PsuI	RGATCY	3 cut(s)	63, 295, 630
RruI	TCGCGA	1 cut(s)	480
RsaI	GTAC	4 cut(s)	169, 240, 673, 972
RsaNI	GTAC	4 cut(s)	168, 239, 672, 971
SaqAI	TTAA	7 cut(s)	21, 159, 444, 488, 639, 663, 1098
SatI	GCNGC	3 cut(s)	348, 449, 758
Sau3AI	GATC	5 cut(s)	63, 295, 562, 630, 1249
Sau96I	GGNCC	3 cut(s)	122, 398, 1005
SchI	GAGTC	1 cut(s)	711
ScrFI	CCNGG	3 cut(s)	626, 676, 1190
SduI	GDGCHC	2 cut(s)	827, 1118
SfaNI	GCATC	2 cut(s)	212, 536
SinI	GGWCC	2 cut(s)	122, 398
SmlI	CTYRAG	3 cut(s)	662, 719, 1235
SmoI	CTYRAG	3 cut(s)	662, 719, 1235
SphI	GCATGC	2 cut(s)	614, 1168
Sse9I	AATT	6 cut(s)	416, 460, 482, 566, 1072, 1213
SseBI	AGGCCT	1 cut(s)	1141
SspMI	CTAG	2 cut(s)	530, 998
StuI	AGGCCT	1 cut(s)	1141
StyD4I	CCNGG	3 cut(s)	624, 674, 1188
TaaI	ACNGT	5 cut(s)	165, 184, 428, 920, 1186
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	3 cut(s)	621, 645, 1252
TasI	AATT	6 cut(s)	416, 460, 482, 566, 1072, 1213
TatI	WGTACW	1 cut(s)	167
TfiI	GAWTC	4 cut(s)	100, 365, 526, 710
Tru1I	TTAA	7 cut(s)	21, 159, 444, 488, 639, 663, 1098
Tru9I	TTAA	7 cut(s)	21, 159, 444, 488, 639, 663, 1098
TscAI	CASTG	2 cut(s)	543, 955
TseFI	GTSAC	4 cut(s)	43, 532, 890, 1131
TseI	GCWGC	3 cut(s)	347, 448, 757
Tsp45I	GTSAC	4 cut(s)	43, 532, 890, 1131
TspDTI	ATGAA	2 cut(s)	420, 720
TspGWI	ACGGA	1 cut(s)	1119
TspRI	CASTG	2 cut(s)	543, 955
Vha464I	CTTAAG	1 cut(s)	662
VneI	GTGCAC	1 cut(s)	1114
VpaK11BI	GGWCC	2 cut(s)	122, 398
XapI	RAATTY	1 cut(s)	482
XceI	RCATGY	3 cut(s)	614, 833, 1168
XcmI	CCANNNNNNNNNTGG	3 cut(s)	757, 862, 1153
XmiI	GTMKAC	1 cut(s)	405
XspI	CTAG	2 cut(s)	530, 998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.