Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001237

Physical Location & Seq

Genomic Coordinates Reverse (-)

28249636 .. 28251125

Gene Structure 1490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g27210.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGACTTTGATTCTGCTAAAAAGATTGGAGAAGGTGGCTTTGGTCCTGTCTACAAGGCAGGGTCACTTACCTGATGGTTCATTGATAGCCGTTAAGCAGCTGTCATCCAATTCAAAGCAAGGAAATCGCGAATTTTTAAACGAGATGGGCATGATAACTTGTTTGCAACACCCGAATTTAGTGACACTGCATGGATGCTGTATTGAAGGGGATCAATTATTACTGGTGTACGAATACATGGAAAACAATAGTCTTGCGAATGCCTTGTTTGGCCAGGAGAACCGGATAAACCTGGACTGGGCTACAAGGGTTAAGATCTGTACCGGGATAGCAAGAGGTTTAGCTTTTCTGCATGAGGAATCAAGACTCAAGATTGTTCACAGAGACATAAAAGCCACCAATGTGCTGCTGGATGCGGATTTGAACCCTAAAATATCGGATTTTGGATTGGCTAAACTTTATGATGAAGAGAAAACACACGTCAGCACCAAAGTTGCAGGAACCATAGGATATATGGCCCCAGAATATGCGTTATGGGGTCACTTGACCTACAAGGCAGATGTTTACAGTTTCGGAGTAGTTGTGTTGGAAATTGCTAGTGGAAAGAAGAACAGTTATGTGCCAAGTAACGCTTGTGTCTCTCTCGTTGACTGGGCCTGTCAGTTGCAACAAGGTGGAAACTTGAAGGAGCTGATAGATGAGAGCTTAGTGAGTGAAGTCAATGACAAAGAAGCAGAAGTAATGGTTAAAGTCGGTTTGCTGTGCACGAATGTTTCTCCGTCACTTAGGCCTACCATGTCCGAGGTGGTGAGCATGCTTGAAGGACAAACAACAGTCCCAGACACGAAGCCTGAAGCAAGTATTATGCACTGTGAAGATTTGAGGCTCAAGGCCGTGAAAGATCGACATCATCAAAGGCAAGCACAAAGTTCAAGTGGAAGCCAATCCGAGAATTTGGCAACTTCTTGTGCAGTTTGCTCTTCCTCGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

331

Amino Acids

36.26

Weight (kDa)

5.95

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29750 AT1G29750 AT1G29750
fragaria_vesca	FvH4_3g07010 FvH4_3g07010 FvH4_3g07045 FvH4_3g07045 FvH4_3g07045 FvH4_3g07045 FvH4_3g07045 FvH4_3g07045
malus_domestica	MD00G1006700.v1.1 MD00G1006800.v1.1 MD00G1006900.v1.1 MD00G1007000.v1.1 MD10G1273400.v1.1 MD10G1273600.v1.1
prunus_persica	Prupe.4G069100_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1
pyrus_communis	pycom05g27170 pycom05g27180 pycom05g27210 pycom05g27220 pycom10g22820 pycom10g22840
rosa_chinensis	RchiOBHm_Chr5g0012071 RchiOBHm_Chr5g0012081 RchiOBHm_Chr5g0012091 RchiOBHm_Chr5g0012101
rosa_laevigata	RLG00000031884 RLG00000031885 RLG00000031889
rosa_multiflora	Rmu_sc0002519.1_g000010 Rmu_sc0002519.1_g000013 Rmu_sc0008172.1_g000001 Rmu_sc0009761.1_g000005
rosa_roxburghii	Rroxscaffold_1G00064490 Rroxscaffold_1G00064500 Rroxscaffold_1G00064510
rosa_rugosa	Rorug05G0000100 Rorug05G0000200 Rorug05G0000200
rosa_samantha	Rh5AG092900 Rh5BG089200 Rh5CG102700
rosa_wichuraiana	Rw5G008110 Rw5G008120 Rw5G008140 Rw5G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	50
AccII	CGCG	1 cut(s)	129
AciI	CCGC	1 cut(s)	416
AclWI	GGATC	1 cut(s)	219
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	3 cut(s)	131, 175, 952
AcuI	CTGAAG	1 cut(s)	873
AfaI	GTAC	2 cut(s)	230, 322
AfiI	CCNNNNNNNGG	1 cut(s)	298
AflIII	ACRYGT	1 cut(s)	478
AgsI	TTSAA	6 cut(s)	114, 206, 424, 685, 821, 933
AjiI	CACGTC	1 cut(s)	481
AjnI	CCWGG	2 cut(s)	273, 291
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AleI	CACNNNNGTG	1 cut(s)	401
AluBI	AGCT	4 cut(s)	100, 344, 691, 705
AluI	AGCT	4 cut(s)	100, 344, 691, 705
Alw21I	GWGCWC	1 cut(s)	767
Alw26I	GTCTC	2 cut(s)	378, 643
Alw44I	GTGCAC	1 cut(s)	763
AlwI	GGATC	1 cut(s)	219
AoxI	GGCC	5 cut(s)	271, 516, 654, 788, 891
ApaLI	GTGCAC	1 cut(s)	763
ApeKI	GCWGC	2 cut(s)	97, 406
ApoI	RAATTY	3 cut(s)	131, 175, 952
AspS9I	GGNCC	3 cut(s)	43, 517, 654
AsuC2I	CCSGG	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	820
AvaII	GGWCC	1 cut(s)	43
BaeGI	GKGCMC	1 cut(s)	767
BalI	TGGCCA	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	767
BbvI	GCAGC	2 cut(s)	109, 393
BccI	CCATC	2 cut(s)	68, 139
BceAI	ACGGC	2 cut(s)	74, 878
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciT130I	CCWGG	2 cut(s)	275, 293
BcnI	CCSGG	1 cut(s)	325
BcoDI	GTCTC	2 cut(s)	378, 643
BfaI	CTAG	1 cut(s)	597
BglII	AGATCT	1 cut(s)	315
BisI	GCNGC	2 cut(s)	98, 407
BlsI	GCNGC	2 cut(s)	99, 408
Bme1390I	CCNGG	3 cut(s)	275, 293, 325
Bme18I	GGWCC	1 cut(s)	43
BmgBI	CACGTC	1 cut(s)	481
BmgT120I	GGNCC	3 cut(s)	43, 517, 654
BmiI	GGNNCC	2 cut(s)	502, 519
BmrFI	CCNGG	3 cut(s)	275, 293, 325
BmrI	ACTGGG	2 cut(s)	307, 661
BmsI	GCATC	2 cut(s)	185, 403
BmuI	ACTGGG	2 cut(s)	307, 661
BpuEI	CTTGAG	2 cut(s)	353, 872
BpuMI	CCSGG	1 cut(s)	325
BsaBI	GATNNNNATC	1 cut(s)	906
BsaJI	CCNNGG	1 cut(s)	801
BsaWI	WCCGGW	1 cut(s)	282
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse1I	ACTGG	3 cut(s)	228, 302, 656
Bse8I	GATNNNNATC	1 cut(s)	906
BseBI	CCWGG	2 cut(s)	275, 293
BseDI	CCNNGG	1 cut(s)	801
BseGI	GGATG	3 cut(s)	104, 200, 418
BseJI	GATNNNNATC	1 cut(s)	906
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseNI	ACTGG	3 cut(s)	228, 302, 656
BseSI	GKGCMC	1 cut(s)	767
BseXI	GCAGC	2 cut(s)	109, 393
BsgI	GTGCAG	1 cut(s)	990
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	5 cut(s)	273, 518, 656, 790, 893
BsiHKAI	GWGCWC	1 cut(s)	767
BsiSI	CCGG	2 cut(s)	283, 324
BslFI	GGGAC	1 cut(s)	821
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	2 cut(s)	378, 643
BsmFI	GGGAC	1 cut(s)	821
BsmI	GAATGC	1 cut(s)	265
BsnI	GGCC	5 cut(s)	273, 518, 656, 790, 893
Bsp1286I	GDGCHC	1 cut(s)	767
Bsp143I	GATC	3 cut(s)	211, 315, 901
Bsp68I	TCGCGA	1 cut(s)	129
BspACI	CCGC	1 cut(s)	416
BspANI	GGCC	5 cut(s)	273, 518, 656, 790, 893
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	502, 519
BspPI	GGATC	1 cut(s)	219
BspQI	GCTCTTC	1 cut(s)	985
BsrI	ACTGG	3 cut(s)	228, 302, 656
BssECI	CCNNGG	1 cut(s)	801
BssMI	GATC	3 cut(s)	211, 315, 901
Bst2UI	CCWGG	2 cut(s)	275, 293
Bst4CI	ACNGT	4 cut(s)	569, 614, 835, 872
Bst6I	CTCTTC	2 cut(s)	462, 985
BstC8I	GCNNGC	2 cut(s)	815, 921
BstDEI	CTNAG	2 cut(s)	706, 785
BstF5I	GGATG	3 cut(s)	104, 200, 418
BstFNI	CGCG	1 cut(s)	129
BstKTI	GATC	3 cut(s)	214, 318, 904
BstMAI	GTCTC	2 cut(s)	378, 643
BstMBI	GATC	3 cut(s)	211, 315, 901
BstNI	CCWGG	2 cut(s)	275, 293
BstNSI	RCATGY	1 cut(s)	817
BstSCI	CCNGG	3 cut(s)	273, 291, 323
BstSLI	GKGCMC	1 cut(s)	767
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	2 cut(s)	109, 393
BstX2I	RGATCY	1 cut(s)	315
BstYI	RGATCY	1 cut(s)	315
BsuRI	GGCC	5 cut(s)	273, 518, 656, 790, 893
BtrI	CACGTC	1 cut(s)	481
BtsCI	GGATG	3 cut(s)	104, 200, 418
BtsI	GCAGTG	1 cut(s)	185
BtsIMutI	CAGTG	2 cut(s)	185, 868
BtuMI	TCGCGA	1 cut(s)	129
Cac8I	GCNNGC	2 cut(s)	815, 921
Cfr13I	GGNCC	3 cut(s)	43, 517, 654
Csp6I	GTAC	2 cut(s)	229, 321
CviAII	CATG	7 cut(s)	151, 191, 238, 353, 796, 814, 990
CviQI	GTAC	2 cut(s)	229, 321
DdeI	CTNAG	2 cut(s)	706, 785
DpnI	GATC	3 cut(s)	213, 317, 903
DpnII	GATC	3 cut(s)	211, 315, 901
DraI	TTTAAA	1 cut(s)	138
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	2 cut(s)	462, 985
EarI	CTCTTC	2 cut(s)	462, 985
Eco147I	AGGCCT	1 cut(s)	790
Eco47I	GGWCC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	873
EcoRII	CCWGG	2 cut(s)	273, 291
FaeI	CATG	7 cut(s)	154, 194, 241, 356, 799, 817, 993
FalI	AAGNNNNNCTT	2 cut(s)	616, 648
FaqI	GGGAC	1 cut(s)	821
FatI	CATG	7 cut(s)	150, 190, 237, 352, 795, 813, 989
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	2 cut(s)	98, 407
FokI	GGATG	3 cut(s)	91, 207, 425
Fsp4HI	GCNGC	2 cut(s)	98, 407
FspBI	CTAG	1 cut(s)	597
GluI	GCNGC	2 cut(s)	98, 407
HaeIII	GGCC	5 cut(s)	273, 518, 656, 790, 893
HapII	CCGG	2 cut(s)	283, 324
Hin1II	CATG	7 cut(s)	154, 194, 241, 356, 799, 817, 993
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HinfI	GANTC	3 cut(s)	10, 359, 366
HpaII	CCGG	2 cut(s)	283, 324
HphI	GGTGA	1 cut(s)	820
Hpy166II	GTNNAC	6 cut(s)	51, 229, 379, 565, 649, 765
Hpy188I	TCNGA	4 cut(s)	439, 575, 802, 949
Hpy188III	TCNNGA	3 cut(s)	128, 363, 370
Hpy8I	GTNNAC	6 cut(s)	51, 229, 379, 565, 649, 765
HpyAV	CCTTC	4 cut(s)	25, 200, 679, 815
HpyCH4III	ACNGT	4 cut(s)	569, 614, 835, 872
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	8 cut(s)	166, 190, 352, 497, 667, 765, 868, 971
HpyF3I	CTNAG	2 cut(s)	706, 785
HpySE526I	ACGT	1 cut(s)	480
Hsp92II	CATG	7 cut(s)	154, 194, 241, 356, 799, 817, 993
Kzo9I	GATC	3 cut(s)	211, 315, 901
LguI	GCTCTTC	1 cut(s)	985
LmnI	GCTCC	1 cut(s)	688
Lsp1109I	GCAGC	2 cut(s)	109, 393
LweI	GCATC	2 cut(s)	185, 403
MaeI	CTAG	1 cut(s)	597
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	5 cut(s)	62, 181, 539, 626, 780
MalI	GATC	3 cut(s)	213, 317, 903
MboI	GATC	3 cut(s)	211, 315, 901
MboII	GAAGA	4 cut(s)	479, 619, 887, 972
MflI	RGATCY	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	767
MlsI	TGGCCA	1 cut(s)	273
MluCI	AATT	6 cut(s)	109, 131, 175, 215, 591, 952
MluNI	TGGCCA	1 cut(s)	273
MlyI	GAGTC	1 cut(s)	360
MmeI	TCCRAC	1 cut(s)	567
MnlI	CCTC	4 cut(s)	329, 349, 796, 876
Mox20I	TGGCCA	1 cut(s)	273
MscI	TGGCCA	1 cut(s)	273
MseI	TTAA	4 cut(s)	93, 137, 312, 747
MslI	CAYNNNNRTG	1 cut(s)	401
Msp20I	TGGCCA	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	100
MspI	CCGG	2 cut(s)	283, 324
MspR9I	CCNGG	3 cut(s)	275, 293, 325
Mva1269I	GAATGC	1 cut(s)	265
MvaI	CCWGG	2 cut(s)	275, 293
MvnI	CGCG	1 cut(s)	129
NciI	CCSGG	1 cut(s)	325
NdeII	GATC	3 cut(s)	211, 315, 901
NlaIII	CATG	7 cut(s)	154, 194, 241, 356, 799, 817, 993
NlaIV	GGNNCC	2 cut(s)	502, 519
NmuCI	GTSAC	4 cut(s)	62, 181, 539, 780
NruI	TCGCGA	1 cut(s)	129
NspI	RCATGY	1 cut(s)	817
OliI	CACNNNNGTG	1 cut(s)	401
PaeI	GCATGC	1 cut(s)	817
PceI	AGGCCT	1 cut(s)	790
PciSI	GCTCTTC	1 cut(s)	985
PctI	GAATGC	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	10, 359
PkrI	GCNGC	2 cut(s)	99, 408
PleI	GAGTC	1 cut(s)	360
PpsI	GAGTC	1 cut(s)	360
Psp6I	CCWGG	2 cut(s)	273, 291
PspGI	CCWGG	2 cut(s)	273, 291
PspN4I	GGNNCC	2 cut(s)	502, 519
PspPI	GGNCC	3 cut(s)	43, 517, 654
PsuI	RGATCY	1 cut(s)	315
PvuII	CAGCTG	1 cut(s)	100
RruI	TCGCGA	1 cut(s)	129
RsaI	GTAC	2 cut(s)	230, 322
RsaNI	GTAC	2 cut(s)	229, 321
RseI	CAYNNNNRTG	1 cut(s)	401
SapI	GCTCTTC	1 cut(s)	985
SaqAI	TTAA	4 cut(s)	93, 137, 312, 747
SatI	GCNGC	2 cut(s)	98, 407
Sau3AI	GATC	3 cut(s)	211, 315, 901
Sau96I	GGNCC	3 cut(s)	43, 517, 654
SchI	GAGTC	1 cut(s)	360
ScrFI	CCNGG	3 cut(s)	275, 293, 325
SduI	GDGCHC	1 cut(s)	767
SfaNI	GCATC	2 cut(s)	185, 403
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	401
SmlI	CTYRAG	2 cut(s)	368, 887
SmoI	CTYRAG	2 cut(s)	368, 887
SphI	GCATGC	1 cut(s)	817
Sse9I	AATT	6 cut(s)	109, 131, 175, 215, 591, 952
SseBI	AGGCCT	1 cut(s)	790
SsiI	CCGC	1 cut(s)	416
SspMI	CTAG	1 cut(s)	597
StuI	AGGCCT	1 cut(s)	790
StyD4I	CCNGG	3 cut(s)	273, 291, 323
TaaI	ACNGT	4 cut(s)	569, 614, 835, 872
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	1 cut(s)	904
TasI	AATT	6 cut(s)	109, 131, 175, 215, 591, 952
TfiI	GAWTC	2 cut(s)	10, 359
Tru1I	TTAA	4 cut(s)	93, 137, 312, 747
Tru9I	TTAA	4 cut(s)	93, 137, 312, 747
TscAI	CASTG	2 cut(s)	192, 875
TseFI	GTSAC	4 cut(s)	62, 181, 539, 780
TseI	GCWGC	2 cut(s)	97, 406
Tsp45I	GTSAC	4 cut(s)	62, 181, 539, 780
TspDTI	ATGAA	2 cut(s)	69, 480
TspGWI	ACGGA	1 cut(s)	768
TspRI	CASTG	2 cut(s)	192, 875
VneI	GTGCAC	1 cut(s)	763
VpaK11BI	GGWCC	1 cut(s)	43
XapI	RAATTY	3 cut(s)	131, 175, 952
XceI	RCATGY	1 cut(s)	817
XcmI	CCANNNNNNNNNTGG	3 cut(s)	406, 511, 802
XmiI	GTMKAC	1 cut(s)	50
XspI	CTAG	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.