Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001237

Physical Location & Seq

Genomic Coordinates Forward (+)

8220071 .. 8220565

Gene Structure 495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG102700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCTTTGCTTATCTCTCATATCTAATCCTCACAAATTTCAGTTTTGGGGGACAGATTCAAACTGTATGCATGTCAATTGTGGTGGAAATGACATAACTGTCAAGGAAGAGAATAACTCAAAGGTCATGTATGAAGGCGATGGTGGAGTTGAAGGTGGTAGTGCAAAATATTTTAGAAATGACAAAAGTATGTGGGGATTCAGTAGCACTGGTGACTTCATGGATGTCTATGATTGGCAAAACACACGTTACTCTATGTCCGTGGCATCTTTGGGTCTCTCCGAGTTATATACAACAGCACGCATATCACCAATTTCACTTAGTTATTTCTACTATTGTTTAGAAAATGGGGTATACACTGTTACTCTCCACTTTGCGGAGATTAAGATCACGAATGTCGGTACACATAGTCTTGGGAGGCGGTTTTTTGATATTTATGTTCAGGTAAATAGTACACTAGCTAATCAAATCTCTCTTGATACAGTTGCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

164

Amino Acids

18.41

Weight (kDa)

5.22

Isoelectric Point (pI)

28.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	22 - 154	4.5e-22	Malectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29750 AT1G29750 AT1G29750
fragaria_vesca	FvH4_3g07010 FvH4_3g07010 FvH4_3g07045 FvH4_3g07045 FvH4_3g07045 FvH4_3g07045 FvH4_3g07045 FvH4_3g07045
malus_domestica	MD00G1006700.v1.1 MD00G1006800.v1.1 MD00G1006900.v1.1 MD00G1007000.v1.1 MD10G1273400.v1.1 MD10G1273600.v1.1
prunus_persica	Prupe.4G069100_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1
pyrus_communis	pycom05g27170 pycom05g27180 pycom05g27210 pycom05g27220 pycom10g22820 pycom10g22840
rosa_chinensis	RchiOBHm_Chr5g0012071 RchiOBHm_Chr5g0012081 RchiOBHm_Chr5g0012091 RchiOBHm_Chr5g0012101
rosa_laevigata	RLG00000031884 RLG00000031885 RLG00000031889
rosa_multiflora	Rmu_sc0002519.1_g000010 Rmu_sc0002519.1_g000013 Rmu_sc0008172.1_g000001 Rmu_sc0009761.1_g000005
rosa_roxburghii	Rroxscaffold_1G00064490 Rroxscaffold_1G00064500 Rroxscaffold_1G00064510
rosa_rugosa	Rorug05G0000100 Rorug05G0000200 Rorug05G0000200
rosa_samantha	Rh5AG092900 Rh5BG089200 Rh5CG102700
rosa_wichuraiana	Rw5G008110 Rw5G008120 Rw5G008140 Rw5G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	98
AccI	GTMKAC	1 cut(s)	354
AciI	CCGC	2 cut(s)	377, 421
AcsI	RAATTY	1 cut(s)	35
AfaI	GTAC	2 cut(s)	403, 454
AfiI	CCNNNNNNNGG	1 cut(s)	376
AflIII	ACRYGT	1 cut(s)	245
AgsI	TTSAA	2 cut(s)	60, 152
AluBI	AGCT	1 cut(s)	461
AluI	AGCT	1 cut(s)	461
Alw26I	GTCTC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	35
AsuHPI	GGTGA	2 cut(s)	224, 300
BccI	CCATC	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	281
BfaI	CTAG	1 cut(s)	458
BmsI	GCATC	1 cut(s)	275
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
BsaBI	GATNNNNATC	1 cut(s)	386
BsaI	GGTCTC	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
Bse1I	ACTGG	1 cut(s)	214
Bse8I	GATNNNNATC	1 cut(s)	386
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	229
BseJI	GATNNNNATC	1 cut(s)	386
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseNI	ACTGG	1 cut(s)	214
BslFI	GGGAC	1 cut(s)	64
BslI	CCNNNNNNNGG	1 cut(s)	376
BsmAI	GTCTC	1 cut(s)	281
BsmFI	GGGAC	1 cut(s)	64
Bso31I	GGTCTC	1 cut(s)	281
Bsp143I	GATC	1 cut(s)	387
BspACI	CCGC	2 cut(s)	377, 421
BspTNI	GGTCTC	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	1 cut(s)	387
BssNAI	GTATAC	1 cut(s)	355
Bst1107I	GTATAC	1 cut(s)	355
Bst4CI	ACNGT	4 cut(s)	65, 100, 361, 484
Bst6I	CTCTTC	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	1 cut(s)	320
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	1 cut(s)	390
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	1 cut(s)	387
BstNSI	RCATGY	1 cut(s)	74
BstZ17I	GTATAC	1 cut(s)	355
BtgI	CCRYGG	1 cut(s)	261
BtgZI	GCGATG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	2 cut(s)	207, 357
Cac8I	GCNNGC	1 cut(s)	301
Csp6I	GTAC	2 cut(s)	402, 453
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviAII	CATG	3 cut(s)	71, 127, 220
CviJI	RGCY	1 cut(s)	461
CviKI_1	RGCY	1 cut(s)	461
CviQI	GTAC	2 cut(s)	402, 453
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	1 cut(s)	389
DpnII	GATC	1 cut(s)	387
DrdI	GACNNNNNNGTC	1 cut(s)	98
DseDI	GACNNNNNNGTC	1 cut(s)	98
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	281
EcoT22I	ATGCAT	1 cut(s)	72
FaeI	CATG	3 cut(s)	74, 130, 223
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	3 cut(s)	70, 126, 219
FblI	GTMKAC	1 cut(s)	354
FokI	GGATG	1 cut(s)	236
FspBI	CTAG	1 cut(s)	458
Hin1II	CATG	3 cut(s)	74, 130, 223
HinfI	GANTC	2 cut(s)	56, 198
HphI	GGTGA	2 cut(s)	224, 300
Hpy166II	GTNNAC	3 cut(s)	355, 404, 455
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	2 cut(s)	391, 476
Hpy8I	GTNNAC	3 cut(s)	355, 404, 455
HpyAV	CCTTC	2 cut(s)	128, 146
HpyCH4III	ACNGT	4 cut(s)	65, 100, 361, 484
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	3 cut(s)	70, 164, 488
HpyF3I	CTNAG	1 cut(s)	320
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	3 cut(s)	74, 130, 223
Kzo9I	GATC	1 cut(s)	387
LpnPI	CCDG	2 cut(s)	195, 428
LweI	GCATC	1 cut(s)	275
MaeI	CTAG	1 cut(s)	458
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	3 cut(s)	212, 248, 361
MalI	GATC	1 cut(s)	389
MboI	GATC	1 cut(s)	387
MboII	GAAGA	1 cut(s)	119
MfeI	CAATTG	1 cut(s)	76
MluCI	AATT	3 cut(s)	35, 76, 312
MnlI	CCTC	2 cut(s)	39, 411
Mph1103I	ATGCAT	1 cut(s)	72
MseI	TTAA	1 cut(s)	384
MunI	CAATTG	1 cut(s)	76
NdeII	GATC	1 cut(s)	387
NlaIII	CATG	3 cut(s)	74, 130, 223
NmuCI	GTSAC	1 cut(s)	212
NsiI	ATGCAT	1 cut(s)	72
NspI	RCATGY	1 cut(s)	74
PfeI	GAWTC	2 cut(s)	56, 198
RsaI	GTAC	2 cut(s)	403, 454
RsaNI	GTAC	2 cut(s)	402, 453
SaqAI	TTAA	1 cut(s)	384
Sau3AI	GATC	1 cut(s)	387
SetI	ASST	5 cut(s)	126, 157, 250, 447, 463
SfaNI	GCATC	1 cut(s)	275
Sse9I	AATT	3 cut(s)	35, 76, 312
SsiI	CCGC	2 cut(s)	377, 421
SspI	AATATT	1 cut(s)	170
SspMI	CTAG	1 cut(s)	458
TaaI	ACNGT	4 cut(s)	65, 100, 361, 484
TaiI	ACGT	1 cut(s)	250
TasI	AATT	3 cut(s)	35, 76, 312
TatI	WGTACW	1 cut(s)	452
TfiI	GAWTC	2 cut(s)	56, 198
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	2 cut(s)	214, 364
TseFI	GTSAC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	2 cut(s)	147, 208
TspGWI	ACGGA	1 cut(s)	250
TspRI	CASTG	2 cut(s)	214, 364
XapI	RAATTY	1 cut(s)	35
XceI	RCATGY	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	354
XspI	CTAG	1 cut(s)	458
Zsp2I	ATGCAT	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.