Rorug05G0000100

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
17984 .. 24885
6902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0000100.1

Sequence Viewer

Length: 1677 bp
ATGCTGGTTACGTCCGCCCGAACACTCCTCAGAAGGCGGCTATGCTCTATTGAGTTGTTAAAAGATTATACGTCAAGGAGAAGTGGTATTAGCTTTAGTAGTAGTACCTGGGCGGCAGCTAATGTTGAAGAAGATGCTGCTGCTGCTGCTGCTGCTTCTTGTTCCTCGTCTGAGTCGGTGTCGGTCGCCTCCCCCTCAGTCAGGAATAATATGCTCCGACGACGACGTTTCGGTATTCGGAGGAACAACGAGAGCCGGAGCACAAGGGATACGGATGCCGTAGAGCTGGCATTGGACTCAGTGGTGAAGATCTTTACTGTGGCGAGCAGCCCTAACTACTTCCTGCCCTGGCAGAACAAGTCCCAACGAGAGACCATGGGTTCCGGATTTGTAATCGCCGGCAAGAAAATTCTTACAAACGCTCATGTAGTTGCTGATCATACATTTGTTCTAGTAAGAAAGCATGGCTCTCCTACCAAGTATAAAGCGCAAGTTGAAGCTGTTGGTCATGAATGTGATTTAGCCATTTTGAGTGTTGAAACTGAAAAGTTCTGGGAGGGTATGAATTCCCTTGAGCTAGGGGATATTCCTTTTCTGCAAGAAGCTGTTGCTGTTGTTGGATATCCTCAAGGTGGGGACAATATCTCTGTTACTAAAGGTGTTGTTTCCAGGGTTGAACCTACACAATATGTTCATGGTGCAACCCAGCTTATGGCAATACAGATTGATGCAGCAATAAATCCCGGAAATAGTGGTGGCCCAGCAATCATGGGAAATAAAGTTGCTGGTGTTGCTTTCCAAAACCTTTCTGGTGCAGAGAATATTGGTTATATAATTCCTGTTCCTGTAATAAAGCATTTTATTGCCGGAGTTGAAGAAAGAGGTAAATATGTTGGATTCTGCTCTCTAGGTTTGTCATGCCAGCCTACTGAAAATGTTCAACTCCGGAACCACTTTCAAATGCGTCCTGAAATGACTGGGGTACTAGTGAGCAAAATCAACCCTCTTTCGGATGCCCACAAAGTCTTAAAGAAAGATGATGTTGTTCTTTTCTTTGATGGAGTTCCTGTAGCAAATGATGGAACAGTTCACTTCAGGAACAGAGAGCGGATAACATTTGATCATTTGGTGTCCATGAAGAAACCCAATGAAACAGCTGTAGTTAGAGTTTTGAGGGATGGCGAAGAATATGAATTCAGTATCACCCTTCAACCTTTACAACCGTTAGTTCCAGTTCATCAGTTCGATAAACTTCCTAGTTATTACATTTTTGCTGGTTTGGTCTTTGTTCCGCTCACTCAACCTTACCTTCATGAGTATGGAGAAGATTGGTATAATACTTCACCTCGTAAATTATGCGAAATCGCATTGAGGGAACCACCTAAAAGAGCTGGTGAACAGATTGTCATCCTTTCTCAGGTACTCATGGATGATATCAATGCTGGATATGAACGTCTTGCAGAGCTGCAGGTTAAGAAGGTTAACGGGATAGAAGTTGAAAATTTGAAACATTTATGCCAACTTGTTGAAAACTGTAGTGAAGAGAGCGTGCGTTTTGATTTGGATGATGATAGAGTTGTTGTGTTGAACTATCATTTAGCAAAAGTTGCGACTTCAAAAATTCTAAATTGCCACAGGATACCCTCTACAATGTCTAATGATCTTTTAGAGAAATAA

Protein Analysis

558

Amino Acids

61.84

Weight (kDa)

6.59

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trypsin PF00089 110 - 288 3.9e-18 Trypsin
Trypsin_2 PF13365 127 - 256 6.1e-21 Trypsin-like peptidase domain
PDZ_2 PF13180 320 - 403 3.8e-06 PDZ domain
PDZ_3 PF17815 410 - 554 1.1e-55 PDZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1459
AccB7I CCANNNNNTGG 1 cut(s) 712
AccBSI CCGCTC 2 cut(s) 1108, 1294
AccIII TCCGGA 2 cut(s) 383, 945
AciI CCGC 5 cut(s) 15, 37, 113, 1108, 1292
AcsI RAATTY 5 cut(s) 408, 565, 1193, 1501, 1620
AcuI CTGAAG 1 cut(s) 1078
AfaI GTAC 3 cut(s) 106, 984, 1422
AfiI CCNNNNNNNGG 5 cut(s) 201, 632, 712, 1009, 1417
AhlI ACTAGT 1 cut(s) 985
AjnI CCWGG 3 cut(s) 107, 347, 668
Alw21I GWGCWC 1 cut(s) 263
Alw26I GTCTC 1 cut(s) 365
Aor13HI TCCGGA 2 cut(s) 383, 945
AoxI GGCC 1 cut(s) 757
ApoI RAATTY 5 cut(s) 408, 565, 1193, 1501, 1620
Asp700I GAANNNNTTC 1 cut(s) 936
AspLEI GCGC 1 cut(s) 490
AspS9I GGNCC 1 cut(s) 758
AsuC2I CCSGG 1 cut(s) 744
AsuHPI GGTGA 4 cut(s) 316, 1195, 1335, 1406
Bbv12I GWGCWC 1 cut(s) 263
BccI CCATC 3 cut(s) 1052, 1073, 1172
BceAI ACGGC 1 cut(s) 263
BciT130I CCWGG 3 cut(s) 109, 349, 670
BciVI GTATCC 2 cut(s) 262, 1632
BclI TGATCA 2 cut(s) 436, 1120
BcnI CCSGG 1 cut(s) 744
BcoDI GTCTC 1 cut(s) 365
BcuI ACTAGT 1 cut(s) 985
BfaI CTAG 5 cut(s) 452, 578, 908, 986, 1257
BfmI CTRYAG 4 cut(s) 1068, 1158, 1466, 1534
BfuAI ACCTGC 1 cut(s) 1459
BfuI GTATCC 2 cut(s) 262, 1632
BglII AGATCT 1 cut(s) 309
Bme1390I CCNGG 4 cut(s) 109, 349, 670, 744
BmgT120I GGNCC 1 cut(s) 758
BmiI GGNNCC 3 cut(s) 382, 950, 1377
BmrFI CCNGG 4 cut(s) 109, 349, 670, 744
BmrI ACTGGG 1 cut(s) 987
BmsI GCATC 4 cut(s) 124, 265, 718, 1003
BmuI ACTGGG 1 cut(s) 987
BpuEI CTTGAG 2 cut(s) 593, 612
BpuMI CCSGG 1 cut(s) 744
BsaBI GATNNNNATC 1 cut(s) 1406
BsaI GGTCTC 1 cut(s) 365
BsaJI CCNNGG 4 cut(s) 108, 347, 375, 669
BsaWI WCCGGW 2 cut(s) 383, 945
BsaXI ACNNNNNCTCC 4 cut(s) 70, 100, 1053, 1083
Bsc4I CCNNNNNNNGG 5 cut(s) 201, 632, 712, 1009, 1417
Bse118I RCCGGY 1 cut(s) 398
Bse1I ACTGG 2 cut(s) 982, 1232
Bse8I GATNNNNATC 1 cut(s) 1406
BseAI TCCGGA 2 cut(s) 383, 945
BseBI CCWGG 3 cut(s) 109, 349, 670
BseDI CCNNGG 4 cut(s) 108, 347, 375, 669
BseGI GGATG 6 cut(s) 280, 1018, 1183, 1407, 1435, 1570
BseJI GATNNNNATC 1 cut(s) 1406
BseLI CCNNNNNNNGG 5 cut(s) 201, 632, 712, 1009, 1417
BseMII CTCAG 5 cut(s) 43, 162, 210, 312, 1430
BseNI ACTGG 2 cut(s) 982, 1232
BseRI GAGGAG 1 cut(s) 17
BseYI CCCAGC 2 cut(s) 705, 760
BsgI GTGCAG 1 cut(s) 834
Bsh1285I CGRYCG 1 cut(s) 186
BshFI GGCC 1 cut(s) 759
BsiEI CGRYCG 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 263
BsiSI CCGG 6 cut(s) 256, 384, 399, 744, 867, 946
BslFI GGGAC 2 cut(s) 346, 650
BslI CCNNNNNNNGG 5 cut(s) 201, 632, 712, 1009, 1417
BsmAI GTCTC 1 cut(s) 365
BsmFI GGGAC 2 cut(s) 346, 650
BsnI GGCC 1 cut(s) 759
Bso31I GGTCTC 1 cut(s) 365
Bsp1286I GDGCHC 1 cut(s) 263
Bsp13I TCCGGA 2 cut(s) 383, 945
Bsp143I GATC 4 cut(s) 309, 436, 1120, 1660
Bsp19I CCATGG 1 cut(s) 375
BspACI CCGC 5 cut(s) 15, 37, 113, 1108, 1292
BspANI GGCC 1 cut(s) 759
BspCNI CTCAG 5 cut(s) 42, 163, 209, 311, 1429
BspEI TCCGGA 2 cut(s) 383, 945
BspHI TCATGA 2 cut(s) 508, 1312
BspLI GGNNCC 3 cut(s) 382, 950, 1377
BspMAI CTGCAG 1 cut(s) 1470
BspMI ACCTGC 1 cut(s) 1459
BspTNI GGTCTC 1 cut(s) 365
BsrBI CCGCTC 2 cut(s) 1108, 1294
BsrFI RCCGGY 1 cut(s) 398
BsrI ACTGG 2 cut(s) 982, 1232
BssAI RCCGGY 1 cut(s) 398
BssECI CCNNGG 4 cut(s) 108, 347, 375, 669
BssMI GATC 4 cut(s) 309, 436, 1120, 1660
BssT1I CCWWGG 1 cut(s) 375
Bst2UI CCWGG 3 cut(s) 109, 349, 670
Bst4CI ACNGT 4 cut(s) 319, 1087, 1224, 1535
Bst6I CTCTTC 1 cut(s) 1536
BstAPI GCANNNNNTGC 1 cut(s) 1607
BstC8I GCNNGC 5 cut(s) 288, 325, 400, 923, 1550
BstDEI CTNAG 5 cut(s) 29, 171, 196, 298, 1416
BstDSI CCRYGG 1 cut(s) 375
BstENI CCTNNNNNAGG 2 cut(s) 199, 1415
BstF5I GGATG 6 cut(s) 280, 1018, 1183, 1407, 1435, 1570
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 4 cut(s) 312, 439, 1123, 1663
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 4 cut(s) 309, 436, 1120, 1660
BstMCI CGRYCG 1 cut(s) 186
BstMWI GCNNNNNNNGC 6 cut(s) 143, 146, 149, 152, 791, 1607
BstNI CCWGG 3 cut(s) 109, 349, 670
BstSCI CCNGG 4 cut(s) 107, 347, 668, 742
BstSFI CTRYAG 4 cut(s) 1068, 1158, 1466, 1534
BstX2I RGATCY 1 cut(s) 309
BstYI RGATCY 1 cut(s) 309
BsuI GTATCC 2 cut(s) 262, 1632
BsuRI GGCC 1 cut(s) 759
BtgI CCRYGG 1 cut(s) 375
BtsCI GGATG 6 cut(s) 280, 1018, 1183, 1407, 1435, 1570
BtsIMutI CAGTG 1 cut(s) 306
BveI ACCTGC 1 cut(s) 1459
Cac8I GCNNGC 5 cut(s) 288, 325, 400, 923, 1550
CciI TCATGA 2 cut(s) 508, 1312
CfoI GCGC 1 cut(s) 490
Cfr10I RCCGGY 1 cut(s) 398
Cfr13I GGNCC 1 cut(s) 758
CseI GACGC 1 cut(s) 953
Csp6I GTAC 3 cut(s) 105, 983, 1421
CviQI GTAC 3 cut(s) 105, 983, 1421
DdeI CTNAG 5 cut(s) 29, 171, 196, 298, 1416
DpnI GATC 4 cut(s) 311, 438, 1122, 1662
DpnII GATC 4 cut(s) 309, 436, 1120, 1660
Eam1104I CTCTTC 1 cut(s) 1536
EarI CTCTTC 1 cut(s) 1536
EciI GGCGGA 1 cut(s) 4
Eco130I CCWWGG 1 cut(s) 375
Eco31I GGTCTC 1 cut(s) 365
Eco32I GATATC 2 cut(s) 623, 1435
Eco57I CTGAAG 1 cut(s) 1078
EcoNI CCTNNNNNAGG 2 cut(s) 199, 1415
EcoRI GAATTC 2 cut(s) 565, 1193
EcoRII CCWGG 3 cut(s) 107, 347, 668
EcoRV GATATC 2 cut(s) 623, 1435
EcoT14I CCWWGG 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 375
FaqI GGGAC 2 cut(s) 346, 650
FbaI TGATCA 2 cut(s) 436, 1120
FokI GGATG 6 cut(s) 287, 1025, 1190, 1394, 1442, 1577
FspBI CTAG 5 cut(s) 452, 578, 908, 986, 1257
GlaI GCGC 1 cut(s) 489
GsaI CCCAGC 2 cut(s) 709, 764
HaeIII GGCC 1 cut(s) 759
HapII CCGG 6 cut(s) 256, 384, 399, 744, 867, 946
HgaI GACGC 1 cut(s) 953
HhaI GCGC 1 cut(s) 490
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HincII GTYRAC 1 cut(s) 1483
HindII GTYRAC 1 cut(s) 1483
HinfI GANTC 3 cut(s) 173, 296, 897
HpaI GTTAAC 1 cut(s) 1483
HpaII CCGG 6 cut(s) 256, 384, 399, 744, 867, 946
HphI GGTGA 4 cut(s) 316, 1195, 1335, 1406
Hpy166II GTNNAC 3 cut(s) 1090, 1397, 1483
Hpy188I TCNGA 5 cut(s) 32, 172, 218, 240, 1012
Hpy188III TCNNGA 7 cut(s) 202, 384, 509, 946, 968, 1096, 1313
Hpy8I GTNNAC 3 cut(s) 1090, 1397, 1483
Hpy99I CGWCG 3 cut(s) 222, 225, 228
HpyAV CCTTC 4 cut(s) 27, 1217, 1319, 1471
HpyCH4III ACNGT 4 cut(s) 319, 1087, 1224, 1535
HpyCH4IV ACGT 4 cut(s) 11, 71, 226, 1453
HpyCH4V TGCA 6 cut(s) 598, 701, 731, 815, 1460, 1468
HpyF10VI GCNNNNNNNGC 6 cut(s) 143, 146, 149, 152, 791, 1607
HpyF3I CTNAG 5 cut(s) 29, 171, 196, 298, 1416
HpySE526I ACGT 4 cut(s) 11, 71, 226, 1453
HspAI GCGC 1 cut(s) 488
Kpn2I TCCGGA 2 cut(s) 383, 945
KroI GCCGGC 1 cut(s) 398
KroNI GCCGGC 1 cut(s) 400
Ksp22I TGATCA 2 cut(s) 436, 1120
KspAI GTTAAC 1 cut(s) 1483
Kzo9I GATC 4 cut(s) 309, 436, 1120, 1660
LmnI GCTCC 2 cut(s) 219, 258
LweI GCATC 4 cut(s) 124, 265, 718, 1003
MaeI CTAG 5 cut(s) 452, 578, 908, 986, 1257
MaeII ACGT 4 cut(s) 11, 71, 226, 1453
MaeIII GTNAC 2 cut(s) 7, 649
MalI GATC 4 cut(s) 311, 438, 1122, 1662
MbiI CCGCTC 2 cut(s) 1108, 1294
MboI GATC 4 cut(s) 309, 436, 1120, 1660
MboII GAAGA 8 cut(s) 140, 143, 319, 887, 1150, 1196, 1337, 1553
MflI RGATCY 1 cut(s) 309
MhlI GDGCHC 1 cut(s) 263
MluCI AATT 8 cut(s) 408, 565, 834, 1193, 1352, 1501, 1620, 1627
MlyI GAGTC 2 cut(s) 182, 290
MmeI TCCRAC 3 cut(s) 241, 598, 874
MroI TCCGGA 2 cut(s) 383, 945
MroNI GCCGGC 1 cut(s) 398
MroXI GAANNNNTTC 1 cut(s) 936
MseI TTAA 4 cut(s) 59, 1028, 1473, 1482
MslI CAYNNNNRTG 2 cut(s) 513, 1317
MspA1I CMGCKG 1 cut(s) 1157
MspI CCGG 6 cut(s) 256, 384, 399, 744, 867, 946
MspR9I CCNGG 4 cut(s) 109, 349, 670, 744
MvaI CCWGG 3 cut(s) 109, 349, 670
MwoI GCNNNNNNNGC 6 cut(s) 143, 146, 149, 152, 791, 1607
NaeI GCCGGC 1 cut(s) 400
NciI CCSGG 1 cut(s) 744
NcoI CCATGG 1 cut(s) 375
NdeII GATC 4 cut(s) 309, 436, 1120, 1660
NgoMIV GCCGGC 1 cut(s) 398
NlaIV GGNNCC 3 cut(s) 382, 950, 1377
PagI TCATGA 2 cut(s) 508, 1312
PdiI GCCGGC 1 cut(s) 400
PdmI GAANNNNTTC 1 cut(s) 936
PfeI GAWTC 1 cut(s) 897
PflMI CCANNNNNTGG 1 cut(s) 712
PfoI TCCNGGA 1 cut(s) 742
PleI GAGTC 2 cut(s) 181, 290
PpsI GAGTC 2 cut(s) 181, 290
Psp6I CCWGG 3 cut(s) 107, 347, 668
PspFI CCCAGC 2 cut(s) 705, 760
PspGI CCWGG 3 cut(s) 107, 347, 668
PspN4I GGNNCC 3 cut(s) 382, 950, 1377
PspPI GGNCC 1 cut(s) 758
PstI CTGCAG 1 cut(s) 1470
PsuI RGATCY 1 cut(s) 309
PvuII CAGCTG 1 cut(s) 1157
RsaI GTAC 3 cut(s) 106, 984, 1422
RsaNI GTAC 3 cut(s) 105, 983, 1421
RseI CAYNNNNRTG 2 cut(s) 513, 1317
SaqAI TTAA 4 cut(s) 59, 1028, 1473, 1482
Sau3AI GATC 4 cut(s) 309, 436, 1120, 1660
Sau96I GGNCC 1 cut(s) 758
SchI GAGTC 2 cut(s) 182, 290
ScrFI CCNGG 4 cut(s) 109, 349, 670, 744
SduI GDGCHC 1 cut(s) 263
SfaNI GCATC 4 cut(s) 124, 265, 718, 1003
SfcI CTRYAG 4 cut(s) 1068, 1158, 1466, 1534
SmiMI CAYNNNNRTG 2 cut(s) 513, 1317
SmlI CTYRAG 2 cut(s) 572, 627
SmoI CTYRAG 2 cut(s) 572, 627
SpeI ACTAGT 1 cut(s) 985
Sse9I AATT 8 cut(s) 408, 565, 834, 1193, 1352, 1501, 1620, 1627
SsiI CCGC 5 cut(s) 15, 37, 113, 1108, 1292
SspI AATATT 1 cut(s) 823
SspMI CTAG 5 cut(s) 452, 578, 908, 986, 1257
StyD4I CCNGG 4 cut(s) 107, 347, 668, 742
StyI CCWWGG 1 cut(s) 375
TaaI ACNGT 4 cut(s) 319, 1087, 1224, 1535
TaiI ACGT 4 cut(s) 14, 74, 229, 1456
TaqI TCGA 1 cut(s) 1245
TaqII GACCGA 1 cut(s) 172
TasI AATT 8 cut(s) 408, 565, 834, 1193, 1352, 1501, 1620, 1627
TauI GCSGC 2 cut(s) 40, 116
TfiI GAWTC 1 cut(s) 897
Tru1I TTAA 4 cut(s) 59, 1028, 1473, 1482
Tru9I TTAA 4 cut(s) 59, 1028, 1473, 1482
TscAI CASTG 1 cut(s) 306
TspDTI ATGAA 9 cut(s) 525, 578, 683, 1151, 1164, 1206, 1226, 1301, 1464
TspGWI ACGGA 1 cut(s) 287
TspRI CASTG 1 cut(s) 306
Van91I CCANNNNNTGG 1 cut(s) 712
XagI CCTNNNNNAGG 2 cut(s) 199, 1415
XapI RAATTY 5 cut(s) 408, 565, 1193, 1501, 1620
XcmI CCANNNNNNNNNTGG 1 cut(s) 806
XmnI GAANNNNTTC 1 cut(s) 936
XspI CTAG 5 cut(s) 452, 578, 908, 986, 1257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.