Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001237

Physical Location & Seq

Genomic Coordinates Reverse (-)

86367208 .. 86373874

Gene Structure 6667 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00064510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1995 bp

ATGGAAATAGTGTTGATGTGTCGTACAATAACTTCACACTGCAAGGCCCTAAGAGCCCTCCTTGTCAAGAACATAATTGTTTCATTCAACAGGAATCTGAGTCTAAACTTGTTTCGAAGCTCCTCAAAGGAGAATGACTTAAGGAGTGTTCTTCCATGCTCGAAGAATTTTCACTGCCCACGATATTCAAACTGTATGCATGTCAATTGTGGTGGAAATGACATAACTGTCAAGGAAGAGAATAACTCAAAGGTCATGTATGAAGGCGATGGTGGAGTTGAAGGTGGTAGTGCAAAATATTTTAGAAATGACAAAAGTACGTGGGGATTCAGTAGCACCGGTGACTTCATGGATGTCTATGATTGGCAAAACACACGCTACTCTATGTCAGTGGCATCTTTGGGTCTCTCCGAGTTATATACAACAGCACGCATATCACCAATTTCACTTAGTTATTTCTACTATTGTTTAGAAAATGGGGTATACACTGTTACTCTCCACTTTGCGGAGATTAAGATCACCAATGTCGGTACACATAGTCTTGGGAGGCGGTTTTTTCATATTTATGTTCAGGAGAGATTGGTTTGGAAGGATTTCAATATTGTTAATGAGGCAGGTATGGCTCAGAAAAGAGTAGTTAAACAATTATCTAATGTCAGTGTGACAAGTAATGTTTTAGAGATCCGATTCTACTGGGCTGGAAAAGGGACAATGAGGATTCCTGAGGGAGGAGATTACGGTCCCCTTATATCAGCTATTTCTGTGGTTTCTGATTTTAAACCTTGTGGAGGCACTGGAACTTTGAAACTTGTTTATACTATTACGGGTGTTGGTGTTGGAGCGCTATGCCTAATTCTCTTCATACTGGCGGTCCTTTGGTGGAAAGGATTCTTTCAAGGAAAAAGGGGGATTAAAAGAGGAGGAGATATCCAGACAGGGAATTTTTGTTTGAAAGAAATAAAAGCAGCCAGTGATGACTTTGATTCAGCAAACAAGATTGGAGAAGGTGGTTTTGGTCCTGTGTTCAAGGGTCAGTTACCAAATGGTTCTTTGATAGCAATTAAGCAGCTCTCATCTAATTCAAAGCAAGGAAATCGTGAGTTCTTAAATGAGATGGGAATGATATCTTGTCTGCAACACCCGAATCTAGTGATACTGCATGGATGTTGTATTGAAGGGGATCAGTTATTGCTGGTGTACGAGTACATGGAAAACAATAGTCTTGCGCGTGCATTATATGGTCCAGAGAAGCATCAGCTAAAACTGGACTGGCCAACAAGGCTTAAGATCTGTATTGGAATAGCTAGAGGTCTCGCTTTTCTTCATGAAGAATCAAGACTCAAGATTGTCCACCGAGACATAAAAGCTACGAATGTGCTGCTGGATAGGGATTTGAACGCTAAAATATCTGACTTTGGATTGGCTAAGCTTGATGAAGATGACAAATCACACATCAGCACTAGAATTGCTGGAACCCTAGGATATATGGCGCCAGAATATGCGCTATGGGGTCACTTAACCTACAAGGCAGATGTTTACAGTTTCGGAGTTGTTGCCTTGGAAATTGTTAGCGGGAAGAGCAATAACAGCTATGTGCCAAATGACAGTTATCTCTGTCTCCTGGACTTTGCTTGGCACTTGCTACAGACTGGAAACTTGAAGGAGCTGGTTGATGAGAGGTTGGGGAATGAAGTCATTGATAAAGAAGCAGAACTTGTTATTAAAATTGGTTTGTTATGTACAAATGCATCTCCAACGCTTAGGCCTACGATGTCTGAGGTGGTGAGCATGCTTGAAGGACGAACAGCAGTGCCGAACATGACCCTGGAAGCAAGTTCCTATACCAAAGATTTGAGGTTCAACGCCATGAGGGACCTCCAACGTCAAAGGAAAAGGCAGAGTTTAAGTGAAAGCCAGCCTCAGAATTTGCCAACCACTAAAACATTTTGCTCTTCCTCTACTTCAAGGTATGACTTGAGAGTTAGAACAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

664

Amino Acids

74.18

Weight (kDa)

8.72

Isoelectric Point (pI)

34.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	65 - 253	1e-38	Malectin domain
Pkinase	PF00069	329 - 535	1.2e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	330 - 598	1.1e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29750 AT1G29750 AT1G29750
fragaria_vesca	FvH4_3g07010 FvH4_3g07010 FvH4_3g07045 FvH4_3g07045 FvH4_3g07045 FvH4_3g07045 FvH4_3g07045 FvH4_3g07045
malus_domestica	MD00G1006700.v1.1 MD00G1006800.v1.1 MD00G1006900.v1.1 MD00G1007000.v1.1 MD10G1273400.v1.1 MD10G1273600.v1.1
prunus_persica	Prupe.4G069100_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1 Prupe.4G069200_v2.0.a1
pyrus_communis	pycom05g27170 pycom05g27180 pycom05g27210 pycom05g27220 pycom10g22820 pycom10g22840
rosa_chinensis	RchiOBHm_Chr5g0012071 RchiOBHm_Chr5g0012081 RchiOBHm_Chr5g0012091 RchiOBHm_Chr5g0012101
rosa_laevigata	RLG00000031884 RLG00000031885 RLG00000031889
rosa_multiflora	Rmu_sc0002519.1_g000010 Rmu_sc0002519.1_g000013 Rmu_sc0008172.1_g000001 Rmu_sc0009761.1_g000005
rosa_roxburghii	Rroxscaffold_1G00064490 Rroxscaffold_1G00064500 Rroxscaffold_1G00064510
rosa_rugosa	Rorug05G0000100 Rorug05G0000200 Rorug05G0000200
rosa_samantha	Rh5AG092900 Rh5BG089200 Rh5CG102700
rosa_wichuraiana	Rw5G008110 Rw5G008120 Rw5G008140 Rw5G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
Acc36I	ACCTGC	1 cut(s)	605
AccB1I	GGYRCC	1 cut(s)	1489
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	1 cut(s)	1228
AciI	CCGC	4 cut(s)	506, 550, 869, 1572
AclWI	GGATC	2 cut(s)	676, 1188
AcoI	YGGCCR	1 cut(s)	1271
AcsI	RAATTY	3 cut(s)	166, 940, 1924
AcyI	GRCGYC	1 cut(s)	1490
AfaI	GTAC	6 cut(s)	25, 319, 532, 1199, 1205, 1741
AfeI	AGCGCT	1 cut(s)	843
AfiI	CCNNNNNNNGG	3 cut(s)	505, 728, 788
AflII	CTTAAG	2 cut(s)	139, 1283
AgeI	ACCGGT	1 cut(s)	338
AjnI	CCWGG	2 cut(s)	1620, 1824
AjuI	GAANNNNNNNTTGG	2 cut(s)	996, 1028
Alw26I	GTCTC	4 cut(s)	410, 1316, 1350, 1622
AlwI	GGATC	2 cut(s)	676, 1188
Aor51HI	AGCGCT	1 cut(s)	843
AoxI	GGCC	3 cut(s)	45, 1271, 1763
ApeKI	GCWGC	3 cut(s)	965, 1066, 1378
ApoI	RAATTY	3 cut(s)	166, 940, 1924
AsiGI	ACCGGT	1 cut(s)	338
Asp700I	GAANNNNTTC	2 cut(s)	593, 887
AspA2I	CCTAGG	1 cut(s)	1477
AspLEI	GCGC	4 cut(s)	844, 1228, 1492, 1504
AspS9I	GGNCC	6 cut(s)	46, 740, 871, 1016, 1241, 1873
AsuHPI	GGTGA	4 cut(s)	353, 429, 511, 1795
AsuII	TTCGAA	1 cut(s)	115
AvaII	GGWCC	5 cut(s)	740, 871, 1016, 1241, 1873
AvrII	CCTAGG	1 cut(s)	1477
AxyI	CCTNAGG	1 cut(s)	723
BalI	TGGCCA	1 cut(s)	1273
BanI	GGYRCC	1 cut(s)	1489
BanII	GRGCYC	1 cut(s)	58
BarI	GAAGNNNNNNTAC	2 cut(s)	16, 48
BbvI	GCAGC	3 cut(s)	977, 1078, 1365
BccI	CCATC	2 cut(s)	263, 1108
BcgI	CGANNNNNNTGC	4 cut(s)	1076, 1110, 1360, 1394
BciT130I	CCWGG	2 cut(s)	1622, 1826
BcoDI	GTCTC	4 cut(s)	410, 1316, 1350, 1622
BfaI	CTAG	4 cut(s)	1148, 1305, 1461, 1478
BfmI	CTRYAG	1 cut(s)	1643
BfoI	RGCGCY	2 cut(s)	845, 1493
BfrI	CTTAAG	2 cut(s)	139, 1283
BfuAI	ACCTGC	1 cut(s)	605
BglI	GCCNNNNNGGC	1 cut(s)	1279
BglII	AGATCT	1 cut(s)	1287
BisI	GCNGC	3 cut(s)	966, 1067, 1379
BlnI	CCTAGG	1 cut(s)	1477
BlpI	GCTNAGC	1 cut(s)	1425
BlsI	GCNGC	3 cut(s)	967, 1068, 1380
Bme1390I	CCNGG	2 cut(s)	1622, 1826
Bme18I	GGWCC	5 cut(s)	740, 871, 1016, 1241, 1873
BmgT120I	GGNCC	6 cut(s)	46, 740, 871, 1016, 1241, 1873
BmiI	GGNNCC	4 cut(s)	742, 1474, 1491, 1874
BmrFI	CCNGG	2 cut(s)	1622, 1826
BmrI	ACTGGG	1 cut(s)	703
BmsI	GCATC	3 cut(s)	404, 1261, 1757
BmuI	ACTGGG	1 cut(s)	703
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
Bpu10I	CCTNAGC	1 cut(s)	1760
Bpu1102I	GCTNAGC	1 cut(s)	1425
Bpu14I	TTCGAA	1 cut(s)	115
BpuEI	CTTGAG	1 cut(s)	1325
BsaAI	YACGTR	1 cut(s)	321
BsaBI	GATNNNNATC	1 cut(s)	515
BsaHI	GRCGYC	1 cut(s)	1490
BsaI	GGTCTC	2 cut(s)	410, 1316
BsaJI	CCNNGG	3 cut(s)	1477, 1557, 1824
BsaWI	WCCGGW	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	3 cut(s)	505, 728, 788
Bse118I	RCCGGY	1 cut(s)	338
Bse1I	ACTGG	7 cut(s)	698, 799, 870, 969, 1269, 1274, 1654
Bse21I	CCTNAGG	1 cut(s)	723
Bse8I	GATNNNNATC	1 cut(s)	515
BseBI	CCWGG	2 cut(s)	1622, 1826
BseDI	CCNNGG	3 cut(s)	1477, 1557, 1824
BseGI	GGATG	2 cut(s)	358, 1169
BseJI	GATNNNNATC	1 cut(s)	515
BseLI	CCNNNNNNNGG	3 cut(s)	505, 728, 788
BseMII	CTCAG	5 cut(s)	89, 638, 714, 1767, 1934
BseNI	ACTGG	7 cut(s)	698, 799, 870, 969, 1269, 1274, 1654
BseRI	GAGGAG	4 cut(s)	112, 744, 933, 936
BseXI	GCAGC	3 cut(s)	977, 1078, 1365
Bsh1236I	CGCG	1 cut(s)	1228
BshFI	GGCC	3 cut(s)	47, 1273, 1765
BshNI	GGYRCC	1 cut(s)	1489
BshTI	ACCGGT	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	339
BslFI	GGGAC	3 cut(s)	721, 726, 1886
BslI	CCNNNNNNNGG	3 cut(s)	505, 728, 788
BsmAI	GTCTC	4 cut(s)	410, 1316, 1350, 1622
BsmFI	GGGAC	3 cut(s)	721, 726, 1886
BsnI	GGCC	3 cut(s)	47, 1273, 1765
Bso31I	GGTCTC	2 cut(s)	410, 1316
Bsp119I	TTCGAA	1 cut(s)	115
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp1407I	TGTACA	1 cut(s)	1739
Bsp143I	GATC	4 cut(s)	516, 681, 1180, 1287
Bsp1720I	GCTNAGC	1 cut(s)	1425
BspACI	CCGC	4 cut(s)	506, 550, 869, 1572
BspANI	GGCC	3 cut(s)	47, 1273, 1765
BspCNI	CTCAG	5 cut(s)	90, 637, 715, 1768, 1933
BspFNI	CGCG	1 cut(s)	1228
BspHI	TCATGA	1 cut(s)	1324
BspLI	GGNNCC	4 cut(s)	742, 1474, 1491, 1874
BspMI	ACCTGC	1 cut(s)	605
BspPI	GGATC	2 cut(s)	676, 1188
BspQI	GCTCTTC	2 cut(s)	1571, 1957
BspT104I	TTCGAA	1 cut(s)	115
BspT107I	GGYRCC	1 cut(s)	1489
BspTI	CTTAAG	2 cut(s)	139, 1283
BspTNI	GGTCTC	2 cut(s)	410, 1316
BsrFI	RCCGGY	1 cut(s)	338
BsrGI	TGTACA	1 cut(s)	1739
BsrI	ACTGG	7 cut(s)	698, 799, 870, 969, 1269, 1274, 1654
BssAI	RCCGGY	1 cut(s)	338
BssECI	CCNNGG	3 cut(s)	1477, 1557, 1824
BssMI	GATC	4 cut(s)	516, 681, 1180, 1287
BssNAI	GTATAC	1 cut(s)	484
BssNI	GRCGYC	1 cut(s)	1490
BssT1I	CCWWGG	2 cut(s)	1477, 1557
Bst1107I	GTATAC	1 cut(s)	484
Bst2UI	CCWGG	2 cut(s)	1622, 1826
Bst4CI	ACNGT	6 cut(s)	194, 229, 490, 740, 1541, 1607
Bst6I	CTCTTC	4 cut(s)	231, 863, 1571, 1957
BstACI	GRCGYC	1 cut(s)	1490
BstAFI	CTTAAG	2 cut(s)	139, 1283
BstAUI	TGTACA	1 cut(s)	1739
BstBAI	YACGTR	1 cut(s)	321
BstBI	TTCGAA	1 cut(s)	115
BstC8I	GCNNGC	4 cut(s)	430, 1230, 1790, 1916
BstDEI	CTNAG	9 cut(s)	50, 98, 449, 624, 723, 1425, 1760, 1776, 1920
BstENI	CCTNNNNNAGG	2 cut(s)	726, 786
BstF5I	GGATG	2 cut(s)	358, 1169
BstFNI	CGCG	1 cut(s)	1228
BstH2I	RGCGCY	2 cut(s)	845, 1493
BstHHI	GCGC	4 cut(s)	844, 1228, 1492, 1504
BstKTI	GATC	4 cut(s)	519, 684, 1183, 1290
BstMAI	GTCTC	4 cut(s)	410, 1316, 1350, 1622
BstMBI	GATC	4 cut(s)	516, 681, 1180, 1287
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 620, 1279, 1578, 1587
BstNI	CCWGG	2 cut(s)	1622, 1826
BstNSI	RCATGY	2 cut(s)	203, 1792
BstSCI	CCNGG	2 cut(s)	1620, 1824
BstSFI	CTRYAG	1 cut(s)	1643
BstUI	CGCG	1 cut(s)	1228
BstV1I	GCAGC	3 cut(s)	977, 1078, 1365
BstX2I	RGATCY	2 cut(s)	681, 1287
BstYI	RGATCY	2 cut(s)	681, 1287
BstZ17I	GTATAC	1 cut(s)	484
Bsu36I	CCTNAGG	1 cut(s)	723
BsuRI	GGCC	3 cut(s)	47, 1273, 1765
BtgZI	GCGATG	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	358, 1169
BtsI	GCAGTG	3 cut(s)	37, 172, 1815
BtsIMutI	CAGTG	8 cut(s)	37, 172, 396, 486, 664, 792, 976, 1815
BveI	ACCTGC	1 cut(s)	605
Cac8I	GCNNGC	4 cut(s)	430, 1230, 1790, 1916
CciI	TCATGA	1 cut(s)	1324
CfoI	GCGC	4 cut(s)	844, 1228, 1492, 1504
Cfr10I	RCCGGY	1 cut(s)	338
Cfr13I	GGNCC	6 cut(s)	46, 740, 871, 1016, 1241, 1873
Csp6I	GTAC	6 cut(s)	24, 318, 531, 1198, 1204, 1740
CspAI	ACCGGT	1 cut(s)	338
CspCI	CAANNNNNGTGG	2 cut(s)	193, 228
CviQI	GTAC	6 cut(s)	24, 318, 531, 1198, 1204, 1740
DdeI	CTNAG	9 cut(s)	50, 98, 449, 624, 723, 1425, 1760, 1776, 1920
DinI	GGCGCC	1 cut(s)	1491
DpnI	GATC	4 cut(s)	518, 683, 1182, 1289
DpnII	GATC	4 cut(s)	516, 681, 1180, 1287
DraI	TTTAAA	1 cut(s)	778
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
EaeI	YGGCCR	1 cut(s)	1271
Eam1104I	CTCTTC	4 cut(s)	231, 863, 1571, 1957
EarI	CTCTTC	4 cut(s)	231, 863, 1571, 1957
Eco130I	CCWWGG	2 cut(s)	1477, 1557
Eco147I	AGGCCT	1 cut(s)	1765
Eco24I	GRGCYC	1 cut(s)	58
Eco31I	GGTCTC	2 cut(s)	410, 1316
Eco32I	GATATC	2 cut(s)	928, 1125
Eco47I	GGWCC	5 cut(s)	740, 871, 1016, 1241, 1873
Eco47III	AGCGCT	1 cut(s)	843
Eco81I	CCTNAGG	1 cut(s)	723
EcoNI	CCTNNNNNAGG	2 cut(s)	726, 786
EcoO109I	RGGNCCY	2 cut(s)	46, 1873
EcoRII	CCWGG	2 cut(s)	1620, 1824
EcoRV	GATATC	2 cut(s)	928, 1125
EcoT14I	CCWWGG	2 cut(s)	1477, 1557
EcoT22I	ATGCAT	2 cut(s)	201, 1750
EcoT38I	GRGCYC	1 cut(s)	58
EgeI	GGCGCC	1 cut(s)	1491
EheI	GGCGCC	1 cut(s)	1491
ErhI	CCWWGG	2 cut(s)	1477, 1557
FalI	AAGNNNNNCTT	2 cut(s)	1698, 1730
FaqI	GGGAC	3 cut(s)	721, 726, 1886
FauI	CCCGC	1 cut(s)	1565
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	3 cut(s)	966, 1067, 1379
FokI	GGATG	2 cut(s)	365, 1176
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	3 cut(s)	966, 1067, 1379
FspBI	CTAG	4 cut(s)	1148, 1305, 1461, 1478
GlaI	GCGC	4 cut(s)	843, 1227, 1491, 1503
GluI	GCNGC	3 cut(s)	966, 1067, 1379
HaeII	RGCGCY	2 cut(s)	845, 1493
HaeIII	GGCC	3 cut(s)	47, 1273, 1765
HapII	CCGG	1 cut(s)	339
HhaI	GCGC	4 cut(s)	844, 1228, 1492, 1504
Hin1I	GRCGYC	1 cut(s)	1490
Hin6I	GCGC	4 cut(s)	842, 1226, 1490, 1502
HinP1I	GCGC	4 cut(s)	842, 1226, 1490, 1502
HindIII	AAGCTT	1 cut(s)	1427
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	4 cut(s)	353, 429, 511, 1795
Hpy166II	GTNNAC	5 cut(s)	484, 533, 1198, 1351, 1537
Hpy188I	TCNGA	9 cut(s)	99, 412, 627, 686, 772, 1411, 1547, 1777, 1923
Hpy188III	TCNNGA	9 cut(s)	67, 572, 722, 931, 1097, 1244, 1325, 1335, 1342
Hpy8I	GTNNAC	5 cut(s)	484, 533, 1198, 1351, 1537
HpyAV	CCTTC	7 cut(s)	257, 275, 583, 998, 1169, 1654, 1790
HpyCH4III	ACNGT	6 cut(s)	194, 229, 490, 740, 1541, 1607
HpyCH4IV	ACGT	2 cut(s)	320, 1882
HpyCH4V	TGCA	7 cut(s)	42, 199, 293, 1135, 1159, 1232, 1748
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 620, 1279, 1578, 1587
HpyF3I	CTNAG	9 cut(s)	50, 98, 449, 624, 723, 1425, 1760, 1776, 1920
HpySE526I	ACGT	2 cut(s)	320, 1882
Hsp92I	GRCGYC	1 cut(s)	1490
HspAI	GCGC	4 cut(s)	842, 1226, 1490, 1502
KasI	GGCGCC	1 cut(s)	1489
Kzo9I	GATC	4 cut(s)	516, 681, 1180, 1287
LguI	GCTCTTC	2 cut(s)	1571, 1957
LmnI	GCTCC	3 cut(s)	125, 839, 1663
Lsp1109I	GCAGC	3 cut(s)	977, 1078, 1365
LweI	GCATC	3 cut(s)	404, 1261, 1757
MaeI	CTAG	4 cut(s)	1148, 1305, 1461, 1478
MaeII	ACGT	2 cut(s)	320, 1882
MaeIII	GTNAC	5 cut(s)	341, 490, 661, 1035, 1511
MalI	GATC	4 cut(s)	518, 683, 1182, 1289
MboI	GATC	4 cut(s)	516, 681, 1180, 1287
MboII	GAAGA	9 cut(s)	143, 175, 248, 850, 1313, 1340, 1448, 1588, 1944
MfeI	CAATTG	1 cut(s)	205
MflI	RGATCY	2 cut(s)	681, 1287
MhlI	GDGCHC	1 cut(s)	58
MlsI	TGGCCA	1 cut(s)	1273
MluNI	TGGCCA	1 cut(s)	1273
Mly113I	GGCGCC	1 cut(s)	1490
MlyI	GAGTC	2 cut(s)	109, 1332
MmeI	TCCRAC	3 cut(s)	817, 1778, 1903
Mox20I	TGGCCA	1 cut(s)	1273
Mph1103I	ATGCAT	2 cut(s)	201, 1750
MroXI	GAANNNNTTC	2 cut(s)	593, 887
MscI	TGGCCA	1 cut(s)	1273
MslI	CAYNNNNRTG	1 cut(s)	564
Msp20I	TGGCCA	1 cut(s)	1273
MspCI	CTTAAG	2 cut(s)	139, 1283
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	2 cut(s)	1622, 1826
MunI	CAATTG	1 cut(s)	205
MvaI	CCWGG	2 cut(s)	1622, 1826
MvnI	CGCG	1 cut(s)	1228
MwoI	GCNNNNNNNGC	5 cut(s)	53, 620, 1279, 1578, 1587
NarI	GGCGCC	1 cut(s)	1490
NdeII	GATC	4 cut(s)	516, 681, 1180, 1287
NlaIV	GGNNCC	4 cut(s)	742, 1474, 1491, 1874
NmuCI	GTSAC	3 cut(s)	341, 661, 1511
NsiI	ATGCAT	2 cut(s)	201, 1750
NspI	RCATGY	2 cut(s)	203, 1792
NspV	TTCGAA	1 cut(s)	115
PaeI	GCATGC	1 cut(s)	1792
PagI	TCATGA	1 cut(s)	1324
PceI	AGGCCT	1 cut(s)	1765
PciSI	GCTCTTC	2 cut(s)	1571, 1957
PdmI	GAANNNNTTC	2 cut(s)	593, 887
PfeI	GAWTC	8 cut(s)	94, 327, 687, 718, 888, 983, 1144, 1331
PfoI	TCCNGGA	1 cut(s)	1620
PinAI	ACCGGT	1 cut(s)	338
PkrI	GCNGC	3 cut(s)	967, 1068, 1380
PleI	GAGTC	2 cut(s)	108, 1332
PluTI	GGCGCC	1 cut(s)	1493
PpsI	GAGTC	2 cut(s)	108, 1332
Ppu21I	YACGTR	1 cut(s)	321
PpuMI	RGGWCCY	1 cut(s)	1873
Psp5II	RGGWCCY	1 cut(s)	1873
Psp6I	CCWGG	2 cut(s)	1620, 1824
PspGI	CCWGG	2 cut(s)	1620, 1824
PspN4I	GGNNCC	4 cut(s)	742, 1474, 1491, 1874
PspPI	GGNCC	6 cut(s)	46, 740, 871, 1016, 1241, 1873
PspPPI	RGGWCCY	1 cut(s)	1873
PsuI	RGATCY	2 cut(s)	681, 1287
RsaI	GTAC	6 cut(s)	25, 319, 532, 1199, 1205, 1741
RsaNI	GTAC	6 cut(s)	24, 318, 531, 1198, 1204, 1740
RseI	CAYNNNNRTG	1 cut(s)	564
SapI	GCTCTTC	2 cut(s)	1571, 1957
SatI	GCNGC	3 cut(s)	966, 1067, 1379
Sau3AI	GATC	4 cut(s)	516, 681, 1180, 1287
Sau96I	GGNCC	6 cut(s)	46, 740, 871, 1016, 1241, 1873
SchI	GAGTC	2 cut(s)	109, 1332
ScrFI	CCNGG	2 cut(s)	1622, 1826
SduI	GDGCHC	1 cut(s)	58
SfaNI	GCATC	3 cut(s)	404, 1261, 1757
SfcI	CTRYAG	1 cut(s)	1643
SfoI	GGCGCC	1 cut(s)	1491
SfuI	TTCGAA	1 cut(s)	115
SgrAI	CRCCGGYG	1 cut(s)	338
SinI	GGWCC	5 cut(s)	740, 871, 1016, 1241, 1873
SmiMI	CAYNNNNRTG	1 cut(s)	564
SmlI	CTYRAG	4 cut(s)	139, 1283, 1340, 1975
SmoI	CTYRAG	4 cut(s)	139, 1283, 1340, 1975
SphI	GCATGC	1 cut(s)	1792
SseBI	AGGCCT	1 cut(s)	1765
SsiI	CCGC	4 cut(s)	506, 550, 869, 1572
SspDI	GGCGCC	1 cut(s)	1489
SspI	AATATT	2 cut(s)	299, 601
SspMI	CTAG	4 cut(s)	1148, 1305, 1461, 1478
StuI	AGGCCT	1 cut(s)	1765
StyD4I	CCNGG	2 cut(s)	1620, 1824
StyI	CCWWGG	2 cut(s)	1477, 1557
TaaI	ACNGT	6 cut(s)	194, 229, 490, 740, 1541, 1607
TaiI	ACGT	2 cut(s)	323, 1885
TaqI	TCGA	2 cut(s)	115, 161
TatI	WGTACW	2 cut(s)	1203, 1739
TfiI	GAWTC	8 cut(s)	94, 327, 687, 718, 888, 983, 1144, 1331
TscAI	CASTG	8 cut(s)	44, 179, 396, 493, 664, 799, 976, 1815
TseFI	GTSAC	3 cut(s)	341, 661, 1511
TseI	GCWGC	3 cut(s)	965, 1066, 1378
Tsp45I	GTSAC	3 cut(s)	341, 661, 1511
TspDTI	ATGAA	9 cut(s)	72, 276, 337, 548, 850, 1313, 1341, 1449, 1704
TspRI	CASTG	8 cut(s)	44, 179, 396, 493, 664, 799, 976, 1815
Vha464I	CTTAAG	2 cut(s)	139, 1283
VpaK11BI	GGWCC	5 cut(s)	740, 871, 1016, 1241, 1873
XagI	CCTNNNNNAGG	2 cut(s)	726, 786
XapI	RAATTY	3 cut(s)	166, 940, 1924
XceI	RCATGY	2 cut(s)	203, 1792
XmaJI	CCTAGG	1 cut(s)	1477
XmiI	GTMKAC	1 cut(s)	483
XmnI	GAANNNNTTC	2 cut(s)	593, 887
XspI	CTAG	4 cut(s)	1148, 1305, 1461, 1478
Zsp2I	ATGCAT	2 cut(s)	201, 1750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.