Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002745

Physical Location & Seq

Genomic Coordinates Forward (+)

32117611 .. 32121422

Gene Structure 3812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCGGATCTCAAGTCAAAGTTTCTGAAGGCGTACTCCGTTCTGAAATCGGAGCTGTTGGAAGACCCTACTTTCGACTTCACCAATGACTCTCGCCAGTGGGTTGAGCGGATGCTGGACTACAATGTGCCTGGAGGGAAGCTTAATCGGGGATTGTCTGTTGTCGACAGCTATCAGTTGTTGCAACAAGGAAGGGAATTAACCGAAGATGAAATCTTCCTGGCCAGCGCTCTCGGTTGGTGCATCGAATGGCTTCAAGCATTCTTTCTGGTTCATGATGACCTCATGGACGGCTCTCACACACGGCGAGGTCAACCTTGCTGGTTTAGATTGCCCAAGGTTGGTATGATTGCAGTAAACGATGGTGTTGTGCTTCGAAACCATATCCCAAGGATTCTCAGAAAGCATTTCAGAGAAAAGCCATATTATGTGGATCTTCTTGATTTGTTCAACGAGGTGGAATTTCAAACTGCCTCAGGTCAGATGATAGATTTGATCACTACTATCGAAGGAGAAAAAGACCTATCCAAATATTCATTGTCAATTCACCGGCGTATTGTTCAGTACAAGACTGCCTATTACTCATTTTACCTTTCAGTTGCATGTGCATTGCTTATGTCAGGTGAGGAACTGGAAAAACATATTGACGTAAAAAACATTCTAGTTGAGATGGGGATCTACTTTCAAGTACAGGATGATTATTTGGATTGCTTTGGCGATCCGGAAACGATTGGTAAGATAGGAACAGATATTGAAGATTTCAAGTGCTCTTGGCTGGTGGTGAAAGCTTTGGAACTCTGCAACGAGGAACAAAAGAAAGTACTACATGAGAATTATGGGAAACCAGACCCAGAAAATGTGGCAAAAGTAAAGGCCCTCTACAAAGAACTCGATATTGAGGGTGTATTTGCGGATTATGAGAGCAAAAGCTACAAGAAACTGACGAGTTGGATTGAAGGGCACCCAAGCAAAGCGGTGCAAGCAGTGTTGAAGTCCTTCTTGGGCAAGATTTACAAGAGGCAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004161 GO:0004337 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016114 GO:0016740 GO:0016765 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045337 GO:0045338 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko05164 ko05166 map00900 map01100 map01110 map01130 map05164 map05166

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

343

Amino Acids

39.57

Weight (kDa)

5.61

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	33 - 297	1.5e-81	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17190 AT4G17190 AT4G17190 AT5G47770
fragaria_vesca	FvH4_3g00240 FvH4_3g00240 FvH4_3g42290 FvH4_6g06340
malus_domestica	MD05G1362500.v1.1 MD10G1340100.v1.1 MD11G1036800.v1.1
prunus_persica	Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.6G028100_v2.0.a1 Prupe.6G028100_v2.0.a1
pyrus_communis	pycom03g02710 pycom05g32900 pycom11g03050
rosa_chinensis	RchiOBHm_Chr5g0000321 RchiOBHm_Chr5g0075621
rosa_laevigata	RLG00000030859 RLG00000036584
rosa_multiflora	Rmu_sc0001680.1_g000008 Rmu_sc0001811.1_g000003
rosa_roxburghii	Rroxscaffold_1G00005950 Rroxscaffold_1G00075800
rosa_rugosa	Rorug04G0383100 Rorug04G0383200 Rorug05G0441800
rosa_samantha	Rh5AG002400 Rh5BG003800 Rh5BG519100 Rh5CG002700 Rh5CG542700 Rh5DG002800 Rh5DG530000
rosa_wichuraiana	Rw5G000290 Rw5G046200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	960
AccBSI	CCGCTC	1 cut(s)	109
AccI	GTMKAC	1 cut(s)	165
AccIII	TCCGGA	1 cut(s)	721
AciI	CCGC	4 cut(s)	5, 109, 911, 974
AclWI	GGATC	4 cut(s)	15, 441, 683, 713
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	461
AcuI	CTGAAG	1 cut(s)	47
AfaI	GTAC	4 cut(s)	35, 566, 690, 822
AfeI	AGCGCT	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	8 cut(s)	257, 451, 467, 686, 755, 763, 956, 991
AjnI	CCWGG	2 cut(s)	130, 219
AjuI	GAANNNNNNNTTGG	2 cut(s)	983, 1015
AluBI	AGCT	5 cut(s)	55, 142, 171, 788, 930
AluI	AGCT	5 cut(s)	55, 142, 171, 788, 930
Alw21I	GWGCWC	1 cut(s)	770
AlwI	GGATC	4 cut(s)	15, 441, 683, 713
Aor13HI	TCCGGA	1 cut(s)	721
Aor51HI	AGCGCT	1 cut(s)	229
AoxI	GGCC	2 cut(s)	222, 873
ApoI	RAATTY	1 cut(s)	461
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
Asp700I	GAANNNNTTC	2 cut(s)	252, 995
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	874
AsuHPI	GGTGA	4 cut(s)	73, 539, 635, 793
AsuII	TTCGAA	1 cut(s)	376
AxyI	CCTNAGG	1 cut(s)	475
BaeGI	GKGCMC	1 cut(s)	963
BalI	TGGCCA	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	960
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	770
BccI	CCATC	2 cut(s)	356, 664
BceAI	ACGGC	2 cut(s)	307, 320
BciT130I	CCWGG	2 cut(s)	132, 221
BclI	TGATCA	1 cut(s)	495
BfaI	CTAG	1 cut(s)	662
BfoI	RGCGCY	1 cut(s)	231
BmcAI	AGTACT	1 cut(s)	822
Bme1390I	CCNGG	2 cut(s)	132, 221
BmgT120I	GGNCC	1 cut(s)	874
BmiI	GGNNCC	1 cut(s)	962
BmrFI	CCNGG	2 cut(s)	132, 221
BmsI	GCATC	2 cut(s)	102, 252
BpiI	GAAGAC	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	376
BsaBI	GATNNNNATC	1 cut(s)	674
BsaJI	CCNNGG	2 cut(s)	336, 389
BsaWI	WCCGGW	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse118I	RCCGGY	1 cut(s)	549
Bse1I	ACTGG	2 cut(s)	97, 636
Bse21I	CCTNAGG	1 cut(s)	475
Bse3DI	GCAATG	1 cut(s)	608
Bse8I	GATNNNNATC	1 cut(s)	674
BseAI	TCCGGA	1 cut(s)	721
BseBI	CCWGG	2 cut(s)	132, 221
BseDI	CCNNGG	2 cut(s)	336, 389
BseGI	GGATG	2 cut(s)	117, 700
BseJI	GATNNNNATC	1 cut(s)	674
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMI	GCAATG	1 cut(s)	608
BseMII	CTCAG	2 cut(s)	412, 489
BseNI	ACTGG	2 cut(s)	97, 636
BseSI	GKGCMC	1 cut(s)	963
BshFI	GGCC	2 cut(s)	224, 875
BshNI	GGYRCC	1 cut(s)	960
BsiHKAI	GWGCWC	1 cut(s)	770
BsiSI	CCGG	2 cut(s)	550, 722
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmI	GAATGC	1 cut(s)	260
BsnI	GGCC	2 cut(s)	224, 875
Bsp119I	TTCGAA	1 cut(s)	376
Bsp1286I	GDGCHC	2 cut(s)	770, 963
Bsp13I	TCCGGA	1 cut(s)	721
Bsp143I	GATC	5 cut(s)	7, 433, 495, 675, 718
BspACI	CCGC	4 cut(s)	5, 109, 911, 974
BspANI	GGCC	2 cut(s)	224, 875
BspCNI	CTCAG	2 cut(s)	411, 488
BspEI	TCCGGA	1 cut(s)	721
BspHI	TCATGA	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	962
BspPI	GGATC	4 cut(s)	15, 441, 683, 713
BspT104I	TTCGAA	1 cut(s)	376
BspT107I	GGYRCC	1 cut(s)	960
BsrBI	CCGCTC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	608
BsrFI	RCCGGY	1 cut(s)	549
BsrI	ACTGG	2 cut(s)	97, 636
BssAI	RCCGGY	1 cut(s)	549
BssECI	CCNNGG	2 cut(s)	336, 389
BssMI	GATC	5 cut(s)	7, 433, 495, 675, 718
BssT1I	CCWWGG	2 cut(s)	336, 389
Bst2UI	CCWGG	2 cut(s)	132, 221
BstBI	TTCGAA	1 cut(s)	376
BstC8I	GCNNGC	2 cut(s)	226, 981
BstDEI	CTNAG	2 cut(s)	398, 475
BstF5I	GGATG	2 cut(s)	117, 700
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	5 cut(s)	10, 436, 498, 678, 721
BstMBI	GATC	5 cut(s)	7, 433, 495, 675, 718
BstMWI	GCNNNNNNNGC	1 cut(s)	980
BstNI	CCWGG	2 cut(s)	132, 221
BstNSI	RCATGY	1 cut(s)	606
BstSCI	CCNGG	2 cut(s)	130, 219
BstSLI	GKGCMC	1 cut(s)	963
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	3 cut(s)	7, 433, 675
BstYI	RGATCY	3 cut(s)	7, 433, 675
Bsu36I	CCTNAGG	1 cut(s)	475
BsuRI	GGCC	2 cut(s)	224, 875
BtsCI	GGATG	2 cut(s)	117, 700
BtsI	GCAGTG	1 cut(s)	990
BtsIMutI	CAGTG	2 cut(s)	104, 990
Cac8I	GCNNGC	2 cut(s)	226, 981
CciI	TCATGA	1 cut(s)	274
CfoI	GCGC	1 cut(s)	230
Cfr10I	RCCGGY	1 cut(s)	549
Cfr13I	GGNCC	1 cut(s)	874
Csp6I	GTAC	4 cut(s)	34, 565, 689, 821
CviAII	CATG	4 cut(s)	275, 286, 603, 827
CviQI	GTAC	4 cut(s)	34, 565, 689, 821
DdeI	CTNAG	2 cut(s)	398, 475
DpnI	GATC	5 cut(s)	9, 435, 497, 677, 720
DpnII	GATC	5 cut(s)	7, 433, 495, 675, 718
EaeI	YGGCCR	1 cut(s)	222
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	336, 389
Eco47III	AGCGCT	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	47
Eco81I	CCTNAGG	1 cut(s)	475
EcoO109I	RGGNCCY	1 cut(s)	874
EcoRII	CCWGG	2 cut(s)	130, 219
EcoT14I	CCWWGG	2 cut(s)	336, 389
ErhI	CCWWGG	2 cut(s)	336, 389
FaeI	CATG	4 cut(s)	278, 289, 606, 830
FalI	AAGNNNNNCTT	2 cut(s)	983, 1015
FatI	CATG	4 cut(s)	274, 285, 602, 826
FbaI	TGATCA	1 cut(s)	495
FblI	GTMKAC	1 cut(s)	165
FokI	GGATG	2 cut(s)	124, 707
FspBI	CTAG	1 cut(s)	662
GlaI	GCGC	1 cut(s)	229
GsuI	CTGGAG	1 cut(s)	153
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	224, 875
HapII	CCGG	2 cut(s)	550, 722
HhaI	GCGC	1 cut(s)	230
Hin1II	CATG	4 cut(s)	278, 289, 606, 830
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HincII	GTYRAC	2 cut(s)	166, 314
HindII	GTYRAC	2 cut(s)	166, 314
HindIII	AAGCTT	2 cut(s)	140, 786
HinfI	GANTC	2 cut(s)	89, 394
HpaII	CCGG	2 cut(s)	550, 722
HphI	GGTGA	4 cut(s)	73, 539, 635, 793
Hpy166II	GTNNAC	3 cut(s)	166, 314, 358
Hpy188I	TCNGA	6 cut(s)	27, 45, 52, 401, 413, 483
Hpy188III	TCNNGA	3 cut(s)	275, 440, 722
Hpy8I	GTNNAC	3 cut(s)	166, 314, 358
HpyAV	CCTTC	5 cut(s)	22, 186, 503, 950, 1006
HpyCH4IV	ACGT	1 cut(s)	648
HpyCH4V	TGCA	7 cut(s)	184, 243, 353, 602, 608, 801, 979
HpyF10VI	GCNNNNNNNGC	1 cut(s)	980
HpyF3I	CTNAG	2 cut(s)	398, 475
HpySE526I	ACGT	1 cut(s)	648
Hsp92II	CATG	4 cut(s)	278, 289, 606, 830
HspAI	GCGC	1 cut(s)	228
Kpn2I	TCCGGA	1 cut(s)	721
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	5 cut(s)	7, 433, 495, 675, 718
LmnI	GCTCC	1 cut(s)	52
LweI	GCATC	2 cut(s)	102, 252
MaeI	CTAG	1 cut(s)	662
MaeII	ACGT	1 cut(s)	648
MalI	GATC	5 cut(s)	9, 435, 497, 677, 720
MbiI	CCGCTC	1 cut(s)	109
MboI	GATC	5 cut(s)	7, 433, 495, 675, 718
MboII	GAAGA	5 cut(s)	74, 208, 218, 428, 767
MflI	RGATCY	3 cut(s)	7, 433, 675
MhlI	GDGCHC	2 cut(s)	770, 963
MlsI	TGGCCA	1 cut(s)	224
MluCI	AATT	4 cut(s)	197, 461, 543, 832
MluNI	TGGCCA	1 cut(s)	224
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	2 cut(s)	39, 929
Mox20I	TGGCCA	1 cut(s)	224
MroI	TCCGGA	1 cut(s)	721
MroXI	GAANNNNTTC	2 cut(s)	252, 995
MscI	TGGCCA	1 cut(s)	224
MseI	TTAA	2 cut(s)	144, 200
Msp20I	TGGCCA	1 cut(s)	224
MspI	CCGG	2 cut(s)	550, 722
MspR9I	CCNGG	2 cut(s)	132, 221
Mva1269I	GAATGC	1 cut(s)	260
MvaI	CCWGG	2 cut(s)	132, 221
MwoI	GCNNNNNNNGC	1 cut(s)	980
NdeII	GATC	5 cut(s)	7, 433, 495, 675, 718
NlaIII	CATG	4 cut(s)	278, 289, 606, 830
NlaIV	GGNNCC	1 cut(s)	962
NspI	RCATGY	1 cut(s)	606
NspV	TTCGAA	1 cut(s)	376
PagI	TCATGA	1 cut(s)	274
PctI	GAATGC	1 cut(s)	260
PdmI	GAANNNNTTC	2 cut(s)	252, 995
PfeI	GAWTC	1 cut(s)	394
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp6I	CCWGG	2 cut(s)	130, 219
PspGI	CCWGG	2 cut(s)	130, 219
PspN4I	GGNNCC	1 cut(s)	962
PspPI	GGNCC	1 cut(s)	874
PsuI	RGATCY	3 cut(s)	7, 433, 675
RsaI	GTAC	4 cut(s)	35, 566, 690, 822
RsaNI	GTAC	4 cut(s)	34, 565, 689, 821
SalI	GTCGAC	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	144, 200
Sau3AI	GATC	5 cut(s)	7, 433, 495, 675, 718
Sau96I	GGNCC	1 cut(s)	874
ScaI	AGTACT	1 cut(s)	822
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	132, 221
SduI	GDGCHC	2 cut(s)	770, 963
SfaNI	GCATC	2 cut(s)	102, 252
SfuI	TTCGAA	1 cut(s)	376
SgrAI	CRCCGGYG	1 cut(s)	549
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	4 cut(s)	197, 461, 543, 832
SsiI	CCGC	4 cut(s)	5, 109, 911, 974
SspI	AATATT	1 cut(s)	533
SspMI	CTAG	1 cut(s)	662
StyD4I	CCNGG	2 cut(s)	130, 219
StyI	CCWWGG	2 cut(s)	336, 389
TaiI	ACGT	1 cut(s)	651
TaqI	TCGA	6 cut(s)	75, 165, 246, 376, 507, 891
TasI	AATT	4 cut(s)	197, 461, 543, 832
TatI	WGTACW	3 cut(s)	564, 688, 820
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	2 cut(s)	144, 200
Tru9I	TTAA	2 cut(s)	144, 200
TscAI	CASTG	2 cut(s)	104, 990
TspDTI	ATGAA	3 cut(s)	225, 263, 525
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	2 cut(s)	104, 990
XapI	RAATTY	1 cut(s)	461
XceI	RCATGY	1 cut(s)	606
XmiI	GTMKAC	1 cut(s)	165
XmnI	GAANNNNTTC	2 cut(s)	252, 995
XspI	CTAG	1 cut(s)	662
ZrmI	AGTACT	1 cut(s)	822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.