Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007032

Physical Location & Seq

Genomic Coordinates Reverse (-)

601803 .. 604194

Gene Structure 2392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g00660.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGATAATGGGAAGCAGGATTCAGCTAACTCAAAACCTGAAGAAGATGCAGGGAAAAAGGCAATTTCCTTTCTTCTTTTTATTCCTACGTACACAATCTTGCTTCAAGTGTCAACAGTCTCTTTTATTTTCTGGGGTTGAAGTAACTGAGAACGCGATTTTGGACTCAAGAGAGAAGATGGAGTTCTATCACACAAAAATGCAGGAACTTGCTGAGTTACTGGCAAAAAAATATGAGAAGAAGTACAAACAAGTGGCAGAAATAGCATCTAAGTTAACTATTGAAGAGGCCTCGTTTCGCGAAGTTCTGGAGAGGAAAATGGAATTGCATCAAGCAATTGTTAAAATGGAGCAAGGAGGTAGTGCAGATGGTATTCTTCAGGTCCGTGCTGATCGTATACAATATGATCTTGAGGAGCTAGTAAAGGCTCTTACAGAACGTTGCAAGAAACATGGATTAAACATGAAATCAAGTGCGATAATTGAGCTTCCAACCGGTACTACAGTCACATTCTTTTTCCTGTACTCTATTGTTTCACTTAAGCAATGTCCCATATTCAACGAGGATACAAATAATCTAGTATATCATTGTATACTCATAATAAGGAAAAGGAATAACTTAATCAGATATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0006810 GO:0006886 GO:0006897 GO:0006996 GO:0007010 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015629 GO:0015833 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030479 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0033036 GO:0034613 GO:0042886 GO:0043167 GO:0043169 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061645 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098657 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

212

Amino Acids

24.68

Weight (kDa)

9.22

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20760
fragaria_vesca	FvH4_5g25580 FvH4_5g25580
malus_domestica	MD06G1007400.v1.1
prunus_persica	Prupe.5G009300_v2.0.a1 Prupe.5G009300_v2.0.a1
pyrus_communis	pycom06g00650 pycom06g00660
rosa_chinensis	RchiOBHm_Chr7g0215891 RchiOBHm_Chr7g0219801 RchiOBHm_Chr7g0219941
rosa_laevigata	RLG00000002612
rosa_multiflora	Rmu_co8383945.1_g000001 Rmu_sc0006240.1_g000011
rosa_roxburghii	Rroxscaffold_3G00243830
rosa_rugosa	Rorug07G0156400 Rorug07G0156500
rosa_samantha	Rh7AG294500 Rh7AG298200 Rh7BG286300 Rh7CG314500 Rh7CG318200 Rh7CG318300 Rh7DG297400
rosa_wichuraiana	Rw7G025020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	397, 592
AccII	CGCG	2 cut(s)	155, 300
AclI	AACGTT	1 cut(s)	439
AcuI	CTGAAG	2 cut(s)	59, 362
AfaI	GTAC	4 cut(s)	91, 245, 499, 524
AflII	CTTAAG	1 cut(s)	539
AgeI	ACCGGT	1 cut(s)	494
AgsI	TTSAA	4 cut(s)	106, 140, 284, 559
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	3 cut(s)	25, 418, 487
AluI	AGCT	3 cut(s)	25, 418, 487
Alw26I	GTCTC	1 cut(s)	123
AoxI	GGCC	1 cut(s)	288
AsiGI	ACCGGT	1 cut(s)	494
AspS9I	GGNCC	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	382
BaeI	ACNNNNGTAYC	2 cut(s)	489, 522
BccI	CCATC	2 cut(s)	172, 362
BciVI	GTATCC	1 cut(s)	559
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	2 cut(s)	419, 578
BfmI	CTRYAG	1 cut(s)	501
BfrI	CTTAAG	1 cut(s)	539
BfuI	GTATCC	1 cut(s)	559
Bme18I	GGWCC	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	382
BmsI	GCATC	3 cut(s)	36, 275, 337
BpmI	CTGGAG	1 cut(s)	329
BpuEI	CTTGAG	2 cut(s)	151, 431
BsaAI	YACGTR	1 cut(s)	89
BsaWI	WCCGGW	1 cut(s)	494
Bse118I	RCCGGY	1 cut(s)	494
Bse1I	ACTGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	551
BseMI	GCAATG	1 cut(s)	551
BseMII	CTCAG	2 cut(s)	138, 204
BseNI	ACTGG	1 cut(s)	225
BseRI	GAGGAG	1 cut(s)	428
BsgI	GTGCAG	1 cut(s)	384
Bsh1236I	CGCG	2 cut(s)	155, 300
BshFI	GGCC	1 cut(s)	290
BshTI	ACCGGT	1 cut(s)	494
BsiSI	CCGG	1 cut(s)	495
BslFI	GGGAC	1 cut(s)	534
BsmAI	GTCTC	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	534
BsnI	GGCC	1 cut(s)	290
Bsp143I	GATC	2 cut(s)	391, 406
Bsp68I	TCGCGA	1 cut(s)	300
BspANI	GGCC	1 cut(s)	290
BspCNI	CTCAG	2 cut(s)	139, 205
BspFNI	CGCG	2 cut(s)	155, 300
BspTI	CTTAAG	1 cut(s)	539
BsrDI	GCAATG	1 cut(s)	551
BsrFI	RCCGGY	1 cut(s)	494
BsrI	ACTGG	1 cut(s)	225
BssAI	RCCGGY	1 cut(s)	494
BssMI	GATC	2 cut(s)	391, 406
BssNAI	GTATAC	2 cut(s)	398, 593
Bst1107I	GTATAC	2 cut(s)	398, 593
Bst4CI	ACNGT	2 cut(s)	117, 505
Bst6I	CTCTTC	1 cut(s)	279
BstAFI	CTTAAG	1 cut(s)	539
BstBAI	YACGTR	1 cut(s)	89
BstDEI	CTNAG	3 cut(s)	147, 213, 270
BstFNI	CGCG	2 cut(s)	155, 300
BstKTI	GATC	2 cut(s)	394, 409
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	2 cut(s)	391, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstSFI	CTRYAG	1 cut(s)	501
BstSNI	TACGTA	1 cut(s)	89
BstUI	CGCG	2 cut(s)	155, 300
BstZ17I	GTATAC	2 cut(s)	398, 593
BsuI	GTATCC	1 cut(s)	559
BsuRI	GGCC	1 cut(s)	290
BtuMI	TCGCGA	1 cut(s)	300
Cfr10I	RCCGGY	1 cut(s)	494
Cfr13I	GGNCC	1 cut(s)	382
Csp6I	GTAC	4 cut(s)	90, 244, 498, 523
CspAI	ACCGGT	1 cut(s)	494
CviAII	CATG	2 cut(s)	452, 463
CviJI	RGCY	5 cut(s)	25, 290, 418, 428, 487
CviKI_1	RGCY	5 cut(s)	25, 290, 418, 428, 487
CviQI	GTAC	4 cut(s)	90, 244, 498, 523
DdeI	CTNAG	3 cut(s)	147, 213, 270
DpnI	GATC	2 cut(s)	393, 408
DpnII	GATC	2 cut(s)	391, 406
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco105I	TACGTA	1 cut(s)	89
Eco147I	AGGCCT	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	382
Eco57I	CTGAAG	2 cut(s)	59, 362
FaeI	CATG	2 cut(s)	455, 466
FaqI	GGGAC	1 cut(s)	534
FatI	CATG	2 cut(s)	451, 462
FblI	GTMKAC	2 cut(s)	397, 592
FspBI	CTAG	2 cut(s)	419, 578
GsuI	CTGGAG	1 cut(s)	329
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	1 cut(s)	495
Hin1II	CATG	2 cut(s)	455, 466
HincII	GTYRAC	2 cut(s)	113, 276
HindII	GTYRAC	2 cut(s)	113, 276
HinfI	GANTC	2 cut(s)	19, 164
HpaI	GTTAAC	1 cut(s)	276
HpaII	CCGG	1 cut(s)	495
Hpy166II	GTNNAC	5 cut(s)	92, 113, 276, 398, 593
Hpy188I	TCNGA	1 cut(s)	626
Hpy188III	TCNNGA	4 cut(s)	168, 299, 308, 410
Hpy8I	GTNNAC	5 cut(s)	92, 113, 276, 398, 593
HpyCH4III	ACNGT	2 cut(s)	117, 505
HpyCH4IV	ACGT	2 cut(s)	88, 439
HpyCH4V	TGCA	5 cut(s)	49, 202, 328, 365, 444
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	3 cut(s)	147, 213, 270
HpySE526I	ACGT	2 cut(s)	88, 439
Hsp92II	CATG	2 cut(s)	455, 466
KspAI	GTTAAC	1 cut(s)	276
Kzo9I	GATC	2 cut(s)	391, 406
LmnI	GCTCC	2 cut(s)	349, 415
LpnPI	CCDG	9 cut(s)	35, 50, 117, 188, 206, 293, 365, 508, 533
LweI	GCATC	3 cut(s)	36, 275, 337
MaeI	CTAG	2 cut(s)	419, 578
MaeII	ACGT	2 cut(s)	88, 439
MaeIII	GTNAC	3 cut(s)	142, 216, 505
MalI	GATC	2 cut(s)	393, 408
MboI	GATC	2 cut(s)	391, 406
MboII	GAAGA	7 cut(s)	52, 55, 64, 187, 250, 296, 368
MfeI	CAATTG	1 cut(s)	336
MluCI	AATT	4 cut(s)	62, 323, 336, 480
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	515
MnlI	CCTC	6 cut(s)	280, 301, 306, 350, 406, 556
MseI	TTAA	5 cut(s)	275, 342, 458, 540, 620
MslI	CAYNNNNRTG	1 cut(s)	197
MspCI	CTTAAG	1 cut(s)	539
MspI	CCGG	1 cut(s)	495
MunI	CAATTG	1 cut(s)	336
MvnI	CGCG	2 cut(s)	155, 300
MwoI	GCNNNNNNNGC	1 cut(s)	263
NdeII	GATC	2 cut(s)	391, 406
NlaIII	CATG	2 cut(s)	455, 466
NmuCI	GTSAC	1 cut(s)	505
NruI	TCGCGA	1 cut(s)	300
PceI	AGGCCT	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	19
PinAI	ACCGGT	1 cut(s)	494
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
Ppu21I	YACGTR	1 cut(s)	89
Psp1406I	AACGTT	1 cut(s)	439
PspPI	GGNCC	1 cut(s)	382
RruI	TCGCGA	1 cut(s)	300
RsaI	GTAC	4 cut(s)	91, 245, 499, 524
RsaNI	GTAC	4 cut(s)	90, 244, 498, 523
RseI	CAYNNNNRTG	1 cut(s)	197
SaqAI	TTAA	5 cut(s)	275, 342, 458, 540, 620
Sau3AI	GATC	2 cut(s)	391, 406
Sau96I	GGNCC	1 cut(s)	382
SchI	GAGTC	1 cut(s)	158
SetI	ASST	8 cut(s)	27, 39, 91, 361, 384, 420, 442, 489
SfaNI	GCATC	3 cut(s)	36, 275, 337
SfcI	CTRYAG	1 cut(s)	501
SinI	GGWCC	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	197
SmlI	CTYRAG	3 cut(s)	166, 410, 539
SmoI	CTYRAG	3 cut(s)	166, 410, 539
SnaBI	TACGTA	1 cut(s)	89
Sse9I	AATT	4 cut(s)	62, 323, 336, 480
SseBI	AGGCCT	1 cut(s)	290
SspMI	CTAG	2 cut(s)	419, 578
StuI	AGGCCT	1 cut(s)	290
TaaI	ACNGT	2 cut(s)	117, 505
TaiI	ACGT	2 cut(s)	91, 442
TasI	AATT	4 cut(s)	62, 323, 336, 480
TatI	WGTACW	2 cut(s)	243, 522
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	5 cut(s)	275, 342, 458, 540, 620
Tru9I	TTAA	5 cut(s)	275, 342, 458, 540, 620
TseFI	GTSAC	1 cut(s)	505
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	1 cut(s)	479
TspGWI	ACGGA	1 cut(s)	374
Vha464I	CTTAAG	1 cut(s)	539
VpaK11BI	GGWCC	1 cut(s)	382
XmiI	GTMKAC	2 cut(s)	397, 592
XspI	CTAG	2 cut(s)	419, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.