Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007032

Physical Location & Seq

Genomic Coordinates Forward (+)

12446595 .. 12446855

Gene Structure 261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0156500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGGGTCTTTGTTCGGTAACTGGCCGTCATATGACCCTCACAACTTCAGCCAGCTCCGACCCTCCGATCCCACAAATCCTTCTGTCAGTCTTCACTTTCTCAATCATCAAAAGCTTGCTTTGGTTTTTTTCTTGTCAAGTTTTCTGCTTCAATTGTCTTATGCAATTTTTTGTAGTGATTGTTGCCAAGTTGTGTTTTTTCTGAACCGAGTTGAGAAAAGAAGGTTGCTTTTTGTTGTGATCTTATTCAGTTCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0006810 GO:0006886 GO:0006897 GO:0006996 GO:0007010 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015629 GO:0015833 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030479 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0033036 GO:0034613 GO:0042886 GO:0043167 GO:0043169 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061645 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098657 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

86

Amino Acids

9.93

Weight (kDa)

8.61

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DDA1	PF10172	3 - 27	1.3e-06	Det1 complexing ubiquitin ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0007032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20760
fragaria_vesca	FvH4_5g25580 FvH4_5g25580
malus_domestica	MD06G1007400.v1.1
prunus_persica	Prupe.5G009300_v2.0.a1 Prupe.5G009300_v2.0.a1
pyrus_communis	pycom06g00650 pycom06g00660
rosa_chinensis	RchiOBHm_Chr7g0215891 RchiOBHm_Chr7g0219801 RchiOBHm_Chr7g0219941
rosa_laevigata	RLG00000002612
rosa_multiflora	Rmu_co8383945.1_g000001 Rmu_sc0006240.1_g000011
rosa_roxburghii	Rroxscaffold_3G00243830
rosa_rugosa	Rorug07G0156400 Rorug07G0156500
rosa_samantha	Rh7AG294500 Rh7AG298200 Rh7BG286300 Rh7CG314500 Rh7CG318200 Rh7CG318300 Rh7DG297400
rosa_wichuraiana	Rw7G025020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	62
AcoI	YGGCCR	1 cut(s)	23
AcuI	CTGAAG	1 cut(s)	31
AgsI	TTSAA	1 cut(s)	152
AluBI	AGCT	2 cut(s)	55, 115
AluI	AGCT	2 cut(s)	55, 115
AlwI	GGATC	1 cut(s)	62
AoxI	GGCC	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	10
BpiI	GAAGAC	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	25
Bsp143I	GATC	2 cut(s)	67, 240
BspANI	GGCC	1 cut(s)	25
BspPI	GGATC	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	26
BssMI	GATC	2 cut(s)	67, 240
BstC8I	GCNNGC	2 cut(s)	53, 117
BstKTI	GATC	2 cut(s)	70, 243
BstMBI	GATC	2 cut(s)	67, 240
BstV2I	GAAGAC	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	25
Cac8I	GCNNGC	2 cut(s)	53, 117
CviJI	RGCY	4 cut(s)	25, 51, 55, 115
CviKI_1	RGCY	4 cut(s)	25, 51, 55, 115
DpnI	GATC	2 cut(s)	69, 242
DpnII	GATC	2 cut(s)	67, 240
EaeI	YGGCCR	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	31
FaiI	YATR	4 cut(s)	31, 33, 162, 259
FauNDI	CATATG	1 cut(s)	31
HaeIII	GGCC	1 cut(s)	25
HindIII	AAGCTT	1 cut(s)	113
Hpy188I	TCNGA	3 cut(s)	59, 67, 204
HpyAV	CCTTC	2 cut(s)	90, 216
HpyCH4V	TGCA	1 cut(s)	164
Kzo9I	GATC	2 cut(s)	67, 240
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	2 cut(s)	7, 65
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	2 cut(s)	69, 242
MboI	GATC	2 cut(s)	67, 240
MboII	GAAGA	1 cut(s)	83
MfeI	CAATTG	1 cut(s)	152
MluCI	AATT	2 cut(s)	152, 165
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	2 cut(s)	48, 73
MunI	CAATTG	1 cut(s)	152
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	2 cut(s)	67, 240
Sau3AI	GATC	2 cut(s)	67, 240
SetI	ASST	3 cut(s)	57, 117, 227
SgeI	CNNG	7 cut(s)	34, 64, 128, 145, 150, 200, 221
Sse9I	AATT	2 cut(s)	152, 165
TasI	AATT	2 cut(s)	152, 165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.