Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007032

Physical Location & Seq

Genomic Coordinates Forward (+)

33987791 .. 33997690

Gene Structure 9900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG318200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCGGCCGGTGCGTATACGGATCAGCTGGAAGCTTACTTTCGGGGAGCGGATTTGGACGGAGATGGCAGGATCAGCGGAGCTGAGGCCGTCGCTTTCTTTCAGGGCGCCAATTTGCCCAAACCAGTTCTTGCTCAGATATGGATGCATGCGGATCAGAACAAAACTGGTTTCCTTGGTCGGCCAGAATTTTATAATGCTCTTAGACTTGTGACTGTGGCTCAAAGCAAGAGAGATTTAACGCCTGATATAGTCAAGGCCGCATTATATGGGCCAGCTGCTGCAAAAATTCCTGCTCCACAAATCAATCTTTCAGCCATATCTGCACCTCAAGCAAATCCTATGGCTGGTGCACCTGCTCCACAGATGGGTATGGGGACACCACCAACATCTCAAAGTTTTGGGTTTAGAGGACCAGGAGCTTCTAATGCAGGTATGAACCAGAATTATTTTCAGCCACAGCAAAACCAGTCCATGAGACCTCCTCAAGGCATGACCGCTGGGATGCCTACTAGTGGATATTCCCGTCCACAACAGGGTGTGGGAGATGGCATGGGGGGTCCCAATCCTTCTGGTGGCCAACTTCAGCAGCCCCAGGCACCGTCAAACTCAAGCCCGCAAGTTTCAGCTGCGGGTCCTTCCTCTTTTGCATCACCTGCAATTTCAGTTGGAGTTGGAAACTCTACTTCTGAAAAGTCACAGCCTCCTTGGCCAAAGATGAAGCCATCTGATGTTCAAAAATATACGAAAGTCTTTATGGAAGTAGACACTGACAGAGATGGGAAAATCACTGGAGAGCAGGCACGAAATTTATTTCTGAGCTGGAGGTTACCAAGAGGTAAGGGTTTTCCCATTTGGATTAATCGTAGACAATGCACTGGGTTGGATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0006810 GO:0006886 GO:0006897 GO:0006996 GO:0007010 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015629 GO:0015833 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030479 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0033036 GO:0034613 GO:0042886 GO:0043167 GO:0043169 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061645 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098657 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

297

Amino Acids

31.41

Weight (kDa)

9.46

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EH	PF12763	14 - 76	2.8e-08	EH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20760
fragaria_vesca	FvH4_5g25580 FvH4_5g25580
malus_domestica	MD06G1007400.v1.1
prunus_persica	Prupe.5G009300_v2.0.a1 Prupe.5G009300_v2.0.a1
pyrus_communis	pycom06g00650 pycom06g00660
rosa_chinensis	RchiOBHm_Chr7g0215891 RchiOBHm_Chr7g0219801 RchiOBHm_Chr7g0219941
rosa_laevigata	RLG00000002612
rosa_multiflora	Rmu_co8383945.1_g000001 Rmu_sc0006240.1_g000011
rosa_roxburghii	Rroxscaffold_3G00243830
rosa_rugosa	Rorug07G0156400 Rorug07G0156500
rosa_samantha	Rh7AG294500 Rh7AG298200 Rh7BG286300 Rh7CG314500 Rh7CG318200 Rh7CG318300 Rh7DG297400
rosa_wichuraiana	Rw7G025020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	195
AarI	CACCTGC	2 cut(s)	364, 664
Acc36I	ACCTGC	3 cut(s)	364, 422, 664
AccB1I	GGYRCC	2 cut(s)	107, 598
AccBSI	CCGCTC	1 cut(s)	50
AccI	GTMKAC	3 cut(s)	17, 765, 868
AciI	CCGC	8 cut(s)	5, 50, 78, 152, 261, 498, 617, 632
AclWI	GGATC	3 cut(s)	30, 80, 162
AcoI	YGGCCR	4 cut(s)	6, 182, 577, 710
AcsI	RAATTY	3 cut(s)	188, 288, 808
AcuI	CTGAAG	1 cut(s)	569
AcyI	GRCGYC	1 cut(s)	108
AfiI	CCNNNNNNNGG	6 cut(s)	347, 368, 488, 515, 536, 575
AgsI	TTSAA	1 cut(s)	737
AhlI	ACTAGT	1 cut(s)	512
AjnI	CCWGG	2 cut(s)	415, 594
AluBI	AGCT	7 cut(s)	28, 35, 83, 278, 422, 629, 822
AluI	AGCT	7 cut(s)	28, 35, 83, 278, 422, 629, 822
Alw21I	GWGCWC	1 cut(s)	355
Alw26I	GTCTC	1 cut(s)	472
Alw44I	GTGCAC	1 cut(s)	351
AlwI	GGATC	3 cut(s)	30, 80, 162
AlwNI	CAGNNNCTG	1 cut(s)	281
AoxI	GGCC	7 cut(s)	6, 87, 182, 258, 272, 577, 710
ApaLI	GTGCAC	1 cut(s)	351
ApeKI	GCWGC	4 cut(s)	278, 281, 589, 629
ApoI	RAATTY	3 cut(s)	188, 288, 808
AseI	ATTAAT	1 cut(s)	861
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	4 cut(s)	272, 413, 560, 635
AsuHPI	GGTGA	1 cut(s)	645
AvaII	GGWCC	3 cut(s)	413, 560, 635
BaeGI	GKGCMC	1 cut(s)	355
BalI	TGGCCA	2 cut(s)	579, 712
BanI	GGYRCC	2 cut(s)	107, 598
Bbv12I	GWGCWC	1 cut(s)	355
BbvCI	CCTCAGC	1 cut(s)	84
BbvI	GCAGC	4 cut(s)	265, 268, 601, 616
BccI	CCATC	5 cut(s)	59, 361, 542, 733, 773
BceAI	ACGGC	1 cut(s)	74
BciT130I	CCWGG	2 cut(s)	417, 596
BcoDI	GTCTC	1 cut(s)	472
BcuI	ACTAGT	1 cut(s)	512
BfaI	CTAG	1 cut(s)	513
BfoI	RGCGCY	1 cut(s)	111
BfuAI	ACCTGC	3 cut(s)	364, 422, 664
BglI	GCCNNNNNGGC	1 cut(s)	709
BisI	GCNGC	6 cut(s)	6, 261, 279, 282, 590, 630
BlsI	GCNGC	6 cut(s)	7, 262, 280, 283, 591, 631
Bme1390I	CCNGG	2 cut(s)	417, 596
Bme18I	GGWCC	3 cut(s)	413, 560, 635
BmgT120I	GGNCC	4 cut(s)	272, 413, 560, 635
BmiI	GGNNCC	5 cut(s)	109, 561, 562, 600, 636
BmrFI	CCNGG	2 cut(s)	417, 596
BmrI	ACTGGG	1 cut(s)	888
BmsI	GCATC	3 cut(s)	135, 495, 659
BmuI	ACTGGG	1 cut(s)	888
BplI	GAGNNNNNCTC	2 cut(s)	469, 501
BpmI	CTGGAG	2 cut(s)	813, 844
Bpu10I	CCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	3 cut(s)	315, 471, 595
BsaHI	GRCGYC	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	472
BsaJI	CCNNGG	3 cut(s)	175, 594, 707
Bsc4I	CCNNNNNNNGG	6 cut(s)	347, 368, 488, 515, 536, 575
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	5 cut(s)	125, 172, 469, 796, 883
BseBI	CCWGG	2 cut(s)	417, 596
BseDI	CCNNGG	3 cut(s)	175, 594, 707
BseGI	GGATG	3 cut(s)	150, 510, 892
BseLI	CCNNNNNNNGG	6 cut(s)	347, 368, 488, 515, 536, 575
BseMII	CTCAG	3 cut(s)	75, 149, 809
BseNI	ACTGG	5 cut(s)	125, 172, 469, 796, 883
BseRI	GAGGAG	1 cut(s)	474
BseSI	GKGCMC	1 cut(s)	355
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	4 cut(s)	265, 268, 601, 616
BseYI	CCCAGC	1 cut(s)	500
BsgI	GTGCAG	1 cut(s)	309
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	7 cut(s)	8, 89, 184, 260, 274, 579, 712
BshNI	GGYRCC	2 cut(s)	107, 598
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	355
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	2 cut(s)	391, 546
BslI	CCNNNNNNNGG	6 cut(s)	347, 368, 488, 515, 536, 575
BsmAI	GTCTC	1 cut(s)	472
BsmFI	GGGAC	2 cut(s)	391, 546
BsnI	GGCC	7 cut(s)	8, 89, 184, 260, 274, 579, 712
Bso31I	GGTCTC	1 cut(s)	472
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	3 cut(s)	22, 72, 154
BspACI	CCGC	8 cut(s)	5, 50, 78, 152, 261, 498, 617, 632
BspANI	GGCC	7 cut(s)	8, 89, 184, 260, 274, 579, 712
BspCNI	CTCAG	3 cut(s)	76, 148, 810
BspLI	GGNNCC	5 cut(s)	109, 561, 562, 600, 636
BspMI	ACCTGC	3 cut(s)	364, 422, 664
BspPI	GGATC	3 cut(s)	30, 80, 162
BspT107I	GGYRCC	2 cut(s)	107, 598
BspTNI	GGTCTC	1 cut(s)	472
BsrBI	CCGCTC	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	5 cut(s)	125, 172, 469, 796, 883
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	3 cut(s)	175, 594, 707
BssMI	GATC	3 cut(s)	22, 72, 154
BssNAI	GTATAC	1 cut(s)	18
BssNI	GRCGYC	1 cut(s)	108
BssT1I	CCWWGG	2 cut(s)	175, 707
Bst1107I	GTATAC	1 cut(s)	18
Bst2UI	CCWGG	2 cut(s)	417, 596
Bst4CI	ACNGT	2 cut(s)	217, 603
BstACI	GRCGYC	1 cut(s)	108
BstAPI	GCANNNNNTGC	1 cut(s)	656
BstC8I	GCNNGC	4 cut(s)	150, 276, 617, 801
BstDEI	CTNAG	4 cut(s)	84, 135, 203, 818
BstEII	GGTNACC	1 cut(s)	828
BstENI	CCTNNNNNAGG	1 cut(s)	486
BstF5I	GGATG	3 cut(s)	150, 510, 892
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	3 cut(s)	25, 75, 157
BstMAI	GTCTC	1 cut(s)	472
BstMBI	GATC	3 cut(s)	22, 72, 154
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 75, 323, 332, 428, 656, 709
BstNI	CCWGG	2 cut(s)	417, 596
BstNSI	RCATGY	1 cut(s)	152
BstPI	GGTNACC	1 cut(s)	828
BstSCI	CCNGG	2 cut(s)	415, 594
BstSLI	GKGCMC	1 cut(s)	355
BstV1I	GCAGC	4 cut(s)	265, 268, 601, 616
BstZ17I	GTATAC	1 cut(s)	18
BstZI	CGGCCG	1 cut(s)	6
BsuRI	GGCC	7 cut(s)	8, 89, 184, 260, 274, 579, 712
BtsCI	GGATG	3 cut(s)	150, 510, 892
BtsIMutI	CAGTG	3 cut(s)	768, 789, 876
BveI	ACCTGC	3 cut(s)	364, 422, 664
Cac8I	GCNNGC	4 cut(s)	150, 276, 617, 801
CaiI	CAGNNNCTG	1 cut(s)	281
CfoI	GCGC	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	4 cut(s)	272, 413, 560, 635
CviAII	CATG	4 cut(s)	149, 475, 493, 553
DdeI	CTNAG	4 cut(s)	84, 135, 203, 818
DinI	GGCGCC	1 cut(s)	109
DpnI	GATC	3 cut(s)	24, 74, 156
DpnII	GATC	3 cut(s)	22, 72, 154
EaeI	YGGCCR	4 cut(s)	6, 182, 577, 710
EagI	CGGCCG	1 cut(s)	6
EclXI	CGGCCG	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	175, 707
Eco31I	GGTCTC	1 cut(s)	472
Eco47I	GGWCC	3 cut(s)	413, 560, 635
Eco52I	CGGCCG	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	569
Eco91I	GGTNACC	1 cut(s)	828
EcoNI	CCTNNNNNAGG	1 cut(s)	486
EcoO109I	RGGNCCY	2 cut(s)	560, 635
EcoO65I	GGTNACC	1 cut(s)	828
EcoRII	CCWGG	2 cut(s)	415, 594
EcoT14I	CCWWGG	2 cut(s)	175, 707
EcoT22I	ATGCAT	1 cut(s)	150
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
ErhI	CCWWGG	2 cut(s)	175, 707
FaeI	CATG	4 cut(s)	152, 478, 496, 556
FaqI	GGGAC	2 cut(s)	391, 546
FatI	CATG	4 cut(s)	148, 474, 492, 552
FauI	CCCGC	2 cut(s)	624, 625
FblI	GTMKAC	3 cut(s)	17, 765, 868
Fnu4HI	GCNGC	6 cut(s)	6, 261, 279, 282, 590, 630
FokI	GGATG	2 cut(s)	157, 517
Fsp4HI	GCNGC	6 cut(s)	6, 261, 279, 282, 590, 630
FspBI	CTAG	1 cut(s)	513
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	6 cut(s)	6, 261, 279, 282, 590, 630
GsaI	CCCAGC	1 cut(s)	504
GsuI	CTGGAG	2 cut(s)	813, 844
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	7 cut(s)	8, 89, 184, 260, 274, 579, 712
HapII	CCGG	1 cut(s)	9
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	4 cut(s)	152, 478, 496, 556
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HindIII	AAGCTT	1 cut(s)	33
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	1 cut(s)	645
Hpy166II	GTNNAC	5 cut(s)	18, 353, 530, 766, 869
Hpy188I	TCNGA	5 cut(s)	138, 159, 691, 730, 819
Hpy8I	GTNNAC	5 cut(s)	18, 353, 530, 766, 869
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	579, 648
HpyCH4III	ACNGT	2 cut(s)	217, 603
HpyCH4V	TGCA	8 cut(s)	148, 284, 326, 353, 431, 650, 659, 876
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 75, 323, 332, 428, 656, 709
HpyF3I	CTNAG	4 cut(s)	84, 135, 203, 818
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	4 cut(s)	152, 478, 496, 556
HspAI	GCGC	1 cut(s)	108
KasI	GGCGCC	1 cut(s)	107
KflI	GGGWCCC	1 cut(s)	560
Kzo9I	GATC	3 cut(s)	22, 72, 154
LmnI	GCTCC	5 cut(s)	47, 80, 301, 364, 419
Lsp1109I	GCAGC	4 cut(s)	265, 268, 601, 616
LweI	GCATC	3 cut(s)	135, 495, 659
MaeI	CTAG	1 cut(s)	513
MaeIII	GTNAC	3 cut(s)	211, 696, 828
MalI	GATC	3 cut(s)	24, 74, 156
MbiI	CCGCTC	1 cut(s)	50
MboI	GATC	3 cut(s)	22, 72, 154
MhlI	GDGCHC	1 cut(s)	355
MlsI	TGGCCA	2 cut(s)	579, 712
MluCI	AATT	6 cut(s)	112, 188, 288, 445, 660, 808
MluNI	TGGCCA	2 cut(s)	579, 712
Mly113I	GGCGCC	1 cut(s)	108
MmeI	TCCRAC	3 cut(s)	649, 655, 864
MnlI	CCTC	9 cut(s)	79, 339, 404, 492, 495, 652, 714, 819, 830
Mox20I	TGGCCA	2 cut(s)	579, 712
Mph1103I	ATGCAT	1 cut(s)	150
MscI	TGGCCA	2 cut(s)	579, 712
MseI	TTAA	2 cut(s)	239, 861
Msp20I	TGGCCA	2 cut(s)	579, 712
MspA1I	CMGCKG	5 cut(s)	28, 78, 278, 500, 629
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	2 cut(s)	417, 596
MvaI	CCWGG	2 cut(s)	417, 596
MwoI	GCNNNNNNNGC	7 cut(s)	11, 75, 323, 332, 428, 656, 709
NarI	GGCGCC	1 cut(s)	108
NdeII	GATC	3 cut(s)	22, 72, 154
NlaIII	CATG	4 cut(s)	152, 478, 496, 556
NlaIV	GGNNCC	5 cut(s)	109, 561, 562, 600, 636
NmuCI	GTSAC	2 cut(s)	211, 696
NsiI	ATGCAT	1 cut(s)	150
NspI	RCATGY	1 cut(s)	152
PaeI	GCATGC	1 cut(s)	152
PaqCI	CACCTGC	2 cut(s)	364, 664
PkrI	GCNGC	6 cut(s)	7, 262, 280, 283, 591, 631
PluTI	GGCGCC	1 cut(s)	111
PpuMI	RGGWCCY	2 cut(s)	560, 635
PshBI	ATTAAT	1 cut(s)	861
PsiI	TTATAA	1 cut(s)	195
Psp5II	RGGWCCY	2 cut(s)	560, 635
Psp6I	CCWGG	2 cut(s)	415, 594
PspEI	GGTNACC	1 cut(s)	828
PspFI	CCCAGC	1 cut(s)	500
PspGI	CCWGG	2 cut(s)	415, 594
PspN4I	GGNNCC	5 cut(s)	109, 561, 562, 600, 636
PspPI	GGNCC	4 cut(s)	272, 413, 560, 635
PspPPI	RGGWCCY	2 cut(s)	560, 635
PstNI	CAGNNNCTG	1 cut(s)	281
PvuII	CAGCTG	3 cut(s)	28, 278, 629
SaqAI	TTAA	2 cut(s)	239, 861
SatI	GCNGC	6 cut(s)	6, 261, 279, 282, 590, 630
Sau3AI	GATC	3 cut(s)	22, 72, 154
Sau96I	GGNCC	4 cut(s)	272, 413, 560, 635
ScrFI	CCNGG	2 cut(s)	417, 596
SduI	GDGCHC	1 cut(s)	355
SfaNI	GCATC	3 cut(s)	135, 495, 659
SfoI	GGCGCC	1 cut(s)	109
SinI	GGWCC	3 cut(s)	413, 560, 635
SmlI	CTYRAG	3 cut(s)	330, 486, 610
SmoI	CTYRAG	3 cut(s)	330, 486, 610
SpeI	ACTAGT	1 cut(s)	512
SphI	GCATGC	1 cut(s)	152
Sse9I	AATT	6 cut(s)	112, 188, 288, 445, 660, 808
SsiI	CCGC	8 cut(s)	5, 50, 78, 152, 261, 498, 617, 632
SspDI	GGCGCC	1 cut(s)	107
SspMI	CTAG	1 cut(s)	513
StyD4I	CCNGG	2 cut(s)	415, 594
StyI	CCWWGG	2 cut(s)	175, 707
TaaI	ACNGT	2 cut(s)	217, 603
TasI	AATT	6 cut(s)	112, 188, 288, 445, 660, 808
TauI	GCSGC	2 cut(s)	8, 263
Tru1I	TTAA	2 cut(s)	239, 861
Tru9I	TTAA	2 cut(s)	239, 861
TscAI	CASTG	3 cut(s)	775, 796, 883
TseFI	GTSAC	2 cut(s)	211, 696
TseI	GCWGC	4 cut(s)	278, 281, 589, 629
Tsp45I	GTSAC	2 cut(s)	211, 696
TspDTI	ATGAA	2 cut(s)	452, 734
TspGWI	ACGGA	2 cut(s)	35, 75
TspRI	CASTG	3 cut(s)	775, 796, 883
VneI	GTGCAC	1 cut(s)	351
VpaK11BI	GGWCC	3 cut(s)	413, 560, 635
VspI	ATTAAT	1 cut(s)	861
XagI	CCTNNNNNAGG	1 cut(s)	486
XapI	RAATTY	3 cut(s)	188, 288, 808
XceI	RCATGY	1 cut(s)	152
XmiI	GTMKAC	3 cut(s)	17, 765, 868
XspI	CTAG	1 cut(s)	513
Zsp2I	ATGCAT	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.