Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007032

Physical Location & Seq

Genomic Coordinates Forward (+)

38506946 .. 38511131

Gene Structure 4186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19672

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGCTTTCCTTGAGAGAGTTCTGCTTTTCTCTCTATTTGATGGAACGTTACAGGGAAGGTCGGCCTCTTCCAGCTACACTTCCAAGCAATGTTATGTTGGATGAGACACTGCTGTCAATGACAGGTCAACCAAAAGTGGGTTATGGAAATGCAGCTTGGAGTCCCCACCCTTGCTTTGGACAACATCAAGGGATGCAAGGTTCCCAGATGATGCCACCTGGCACTGGTTTGAGGCCACCAATTCAGGGAAACGCCCCTCAGGCTGATCGTACACTGCAACCGAATCAGCAAAATTTGAGGGTGCCAGGGATGGAGGGCTTGGCTCAAAACCAGCTTGACAATGGGAAGCAGGATTCAGCCAACTCAAGACCTCAGGACCCTAATGGTGCAGGGAAAGAGGCAAGTTCCTTTGACCCTTCAGTTGAAGAAACTGAGAATGTGATTTTGGACTCAAGAGAGAAGATTGAGTTCTATCGCACGAAAATGCAGGAGCTTGCTCTGTATAAAAGCAGATGTGATAACAGATTAAATGAGATCACAGAAAGGGCACTGGCAGACAAGCGTGAGGCTGAACTACTGGGTAAGAAGTATGAAGAGAAATATAAACAAGTGGCAGAAATAGCATCTAAGTTAACCATTGAAGAGGCCACCTTTCGTGAAGTTCAGATGGAATTGCATCAAGCAATTGTTAAAATGGAGCAAGGAGGTAGTGCTGATGGTATCCTTCAGCTAATAAAGGCTCTTACTGAACGTTGCAAGAAACATGGGCTAGACATGAAGTCAGCTGCAATAATTGAGCTTCCAACTGGTTGGCAACCTGGAATTCAAGACGGAGCAGCTGTTTGGGACGAAGATTGGGACAAGTTTGAAGATGAAGGATTTGGCAATGATCTCATAATTGATTCCTCAACAAAATCTGTCCAGAGAGAAAAGGCTTCCCCAGATCGTAGTTCAACTGCTGATTCATCATCGGTTACTGATGGAAAGTCAGGAATTTCTTACAGCAATGGTGATCATGCACATGAAAGTGAATCTGTTTTCACCCACGGTGAAGATGAACATGTAAGAAGTCCCAATGGCAGTCTAGCTGGAACGACTGCTGTTGACAGCCCGTCTCGAGACTTCTCAGACATCCACTATGGTAAAAATTCCGAAGCAGATGGAGAAACACACGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0006810 GO:0006886 GO:0006897 GO:0006996 GO:0007010 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015629 GO:0015833 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030479 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0033036 GO:0034613 GO:0042886 GO:0043167 GO:0043169 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061645 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098657 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

392

Amino Acids

43.22

Weight (kDa)

4.94

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20760
fragaria_vesca	FvH4_5g25580 FvH4_5g25580
malus_domestica	MD06G1007400.v1.1
prunus_persica	Prupe.5G009300_v2.0.a1 Prupe.5G009300_v2.0.a1
pyrus_communis	pycom06g00650 pycom06g00660
rosa_chinensis	RchiOBHm_Chr7g0215891 RchiOBHm_Chr7g0219801 RchiOBHm_Chr7g0219941
rosa_laevigata	RLG00000002612
rosa_multiflora	Rmu_co8383945.1_g000001 Rmu_sc0006240.1_g000011
rosa_roxburghii	Rroxscaffold_3G00243830
rosa_rugosa	Rorug07G0156400 Rorug07G0156500
rosa_samantha	Rh7AG294500 Rh7AG298200 Rh7BG286300 Rh7CG314500 Rh7CG318200 Rh7CG318300 Rh7DG297400
rosa_wichuraiana	Rw7G025020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	112
AccB1I	GGYRCC	1 cut(s)	301
AclI	AACGTT	2 cut(s)	46, 751
AcsI	RAATTY	4 cut(s)	292, 822, 993, 1147
AcuI	CTGAAG	2 cut(s)	402, 710
AfaI	GTAC	1 cut(s)	271
AfiI	CCNNNNNNNGG	4 cut(s)	137, 176, 224, 245
AflIII	ACRYGT	1 cut(s)	1060
AgsI	TTSAA	5 cut(s)	425, 641, 827, 869, 954
AhdI	GACNNNNNGTC	2 cut(s)	778, 1111
AjnI	CCWGG	3 cut(s)	217, 304, 817
AjuI	GAANNNNNNNTTGG	4 cut(s)	139, 171, 428, 460
AloI	GAACNNNNNNTCC	2 cut(s)	184, 216
AluBI	AGCT	9 cut(s)	74, 155, 334, 493, 730, 785, 799, 839, 1088
AluI	AGCT	9 cut(s)	74, 155, 334, 493, 730, 785, 799, 839, 1088
Alw26I	GTCTC	3 cut(s)	98, 1113, 1119
Ama87I	CYCGRG	1 cut(s)	1116
AoxI	GGCC	3 cut(s)	62, 233, 645
ApeKI	GCWGC	3 cut(s)	152, 785, 836
ApoI	RAATTY	4 cut(s)	292, 822, 993, 1147
AspS9I	GGNCC	1 cut(s)	376
AsuHPI	GGTGA	3 cut(s)	1022, 1033, 1061
AvaI	CYCGRG	1 cut(s)	1116
AvaII	GGWCC	1 cut(s)	376
AxyI	CCTNAGG	2 cut(s)	258, 372
BaeGI	GKGCMC	1 cut(s)	550
BanI	GGYRCC	1 cut(s)	301
BbvI	GCAGC	3 cut(s)	164, 772, 848
BccI	CCATC	6 cut(s)	34, 304, 661, 710, 974, 1154
BciT130I	CCWGG	3 cut(s)	219, 306, 819
BciVI	GTATCC	1 cut(s)	731
BclI	TGATCA	1 cut(s)	1012
BcoDI	GTCTC	3 cut(s)	98, 1113, 1119
BfaI	CTAG	2 cut(s)	770, 1085
BfuI	GTATCC	1 cut(s)	731
BglI	GCCNNNNNGGC	1 cut(s)	260
BisI	GCNGC	3 cut(s)	153, 786, 837
BlsI	GCNGC	3 cut(s)	154, 787, 838
Bme1390I	CCNGG	3 cut(s)	219, 306, 819
Bme18I	GGWCC	1 cut(s)	376
BmeRI	GACNNNNNGTC	2 cut(s)	778, 1111
BmeT110I	CYCGRG	1 cut(s)	1116
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	3 cut(s)	202, 303, 378
BmrFI	CCNGG	3 cut(s)	219, 306, 819
BmrI	ACTGGG	1 cut(s)	587
BmsI	GCATC	4 cut(s)	183, 201, 632, 685
BmuI	ACTGGG	1 cut(s)	587
BpuEI	CTTGAG	3 cut(s)	31, 349, 436
BsaJI	CCNNGG	2 cut(s)	305, 1045
BsaXI	ACNNNNNCTCC	2 cut(s)	825, 855
Bsc4I	CCNNNNNNNGG	4 cut(s)	137, 176, 224, 245
Bse1I	ACTGG	4 cut(s)	229, 555, 582, 811
Bse21I	CCTNAGG	2 cut(s)	258, 372
Bse3DI	GCAATG	3 cut(s)	94, 892, 1012
BseBI	CCWGG	3 cut(s)	219, 306, 819
BseDI	CCNNGG	2 cut(s)	305, 1045
BseGI	GGATG	4 cut(s)	106, 198, 315, 1131
BseLI	CCNNNNNNNGG	4 cut(s)	137, 176, 224, 245
BseMI	GCAATG	3 cut(s)	94, 892, 1012
BseMII	CTCAG	4 cut(s)	272, 386, 423, 1140
BseNI	ACTGG	4 cut(s)	229, 555, 582, 811
BseSI	GKGCMC	1 cut(s)	550
BseXI	GCAGC	3 cut(s)	164, 772, 848
BsgI	GTGCAG	1 cut(s)	408
BshFI	GGCC	3 cut(s)	64, 235, 647
BshNI	GGYRCC	1 cut(s)	301
BsiHKCI	CYCGRG	1 cut(s)	1116
BslFI	GGGAC	4 cut(s)	147, 860, 872, 1056
BslI	CCNNNNNNNGG	4 cut(s)	137, 176, 224, 245
BsmAI	GTCTC	3 cut(s)	98, 1113, 1119
BsmBI	CGTCTC	1 cut(s)	1119
BsmFI	GGGAC	4 cut(s)	147, 860, 872, 1056
BsnI	GGCC	3 cut(s)	64, 235, 647
BsoBI	CYCGRG	1 cut(s)	1116
Bsp1286I	GDGCHC	1 cut(s)	550
Bsp143I	GATC	5 cut(s)	265, 534, 889, 943, 1012
BspANI	GGCC	3 cut(s)	64, 235, 647
BspCNI	CTCAG	4 cut(s)	271, 385, 424, 1139
BspLI	GGNNCC	3 cut(s)	202, 303, 378
BspT107I	GGYRCC	1 cut(s)	301
BsrDI	GCAATG	3 cut(s)	94, 892, 1012
BsrI	ACTGG	4 cut(s)	229, 555, 582, 811
BssECI	CCNNGG	2 cut(s)	305, 1045
BssMI	GATC	5 cut(s)	265, 534, 889, 943, 1012
Bst2UI	CCWGG	3 cut(s)	219, 306, 819
Bst4CI	ACNGT	1 cut(s)	1049
Bst6I	CTCTTC	3 cut(s)	72, 588, 636
BstC8I	GCNNGC	1 cut(s)	495
BstDEI	CTNAG	5 cut(s)	258, 372, 432, 627, 1126
BstDSI	CCRYGG	1 cut(s)	1045
BstF5I	GGATG	4 cut(s)	106, 198, 315, 1131
BstKTI	GATC	5 cut(s)	268, 537, 892, 946, 1015
BstMAI	GTCTC	3 cut(s)	98, 1113, 1119
BstMBI	GATC	5 cut(s)	265, 534, 889, 943, 1012
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 620
BstNI	CCWGG	3 cut(s)	219, 306, 819
BstNSI	RCATGY	1 cut(s)	1064
BstSCI	CCNGG	3 cut(s)	217, 304, 817
BstSLI	GKGCMC	1 cut(s)	550
BstV1I	GCAGC	3 cut(s)	164, 772, 848
BstXI	CCANNNNNNTGG	1 cut(s)	810
Bsu36I	CCTNAGG	2 cut(s)	258, 372
BsuI	GTATCC	1 cut(s)	731
BsuRI	GGCC	3 cut(s)	64, 235, 647
BtgI	CCRYGG	1 cut(s)	1045
BtsCI	GGATG	4 cut(s)	106, 198, 315, 1131
BtsI	GCAGTG	2 cut(s)	107, 272
BtsIMutI	CAGTG	4 cut(s)	107, 222, 272, 548
Cac8I	GCNNGC	1 cut(s)	495
Cfr13I	GGNCC	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	270
CviAII	CATG	5 cut(s)	764, 775, 1016, 1022, 1061
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	5 cut(s)	258, 372, 432, 627, 1126
DpnI	GATC	5 cut(s)	267, 536, 891, 945, 1014
DpnII	GATC	5 cut(s)	265, 534, 889, 943, 1012
DrdI	GACNNNNNNGTC	1 cut(s)	112
DriI	GACNNNNNGTC	2 cut(s)	778, 1111
DseDI	GACNNNNNNGTC	1 cut(s)	112
Eam1104I	CTCTTC	3 cut(s)	72, 588, 636
Eam1105I	GACNNNNNGTC	2 cut(s)	778, 1111
EarI	CTCTTC	3 cut(s)	72, 588, 636
Eco47I	GGWCC	1 cut(s)	376
Eco57I	CTGAAG	2 cut(s)	402, 710
Eco81I	CCTNAGG	2 cut(s)	258, 372
Eco88I	CYCGRG	1 cut(s)	1116
EcoO109I	RGGNCCY	1 cut(s)	376
EcoRI	GAATTC	1 cut(s)	822
EcoRII	CCWGG	3 cut(s)	217, 304, 817
Esp3I	CGTCTC	1 cut(s)	1119
FaeI	CATG	5 cut(s)	767, 778, 1019, 1025, 1064
FaqI	GGGAC	4 cut(s)	147, 860, 872, 1056
FatI	CATG	5 cut(s)	763, 774, 1015, 1021, 1060
FbaI	TGATCA	1 cut(s)	1012
Fnu4HI	GCNGC	3 cut(s)	153, 786, 837
FokI	GGATG	4 cut(s)	113, 205, 322, 1118
Fsp4HI	GCNGC	3 cut(s)	153, 786, 837
FspBI	CTAG	2 cut(s)	770, 1085
GluI	GCNGC	3 cut(s)	153, 786, 837
HaeIII	GGCC	3 cut(s)	64, 235, 647
Hin1II	CATG	5 cut(s)	767, 778, 1019, 1025, 1064
HincII	GTYRAC	3 cut(s)	128, 633, 1105
HindII	GTYRAC	3 cut(s)	128, 633, 1105
HinfI	GANTC	7 cut(s)	160, 283, 353, 449, 902, 962, 1031
HpaI	GTTAAC	1 cut(s)	633
HphI	GGTGA	3 cut(s)	1022, 1033, 1061
Hpy166II	GTNNAC	4 cut(s)	128, 272, 633, 1105
Hpy188I	TCNGA	3 cut(s)	666, 1129, 1153
Hpy188III	TCNNGA	9 cut(s)	366, 374, 453, 656, 827, 922, 990, 1116, 1118
Hpy8I	GTNNAC	4 cut(s)	128, 272, 633, 1105
HpyAV	CCTTC	4 cut(s)	50, 426, 734, 869
HpyCH4III	ACNGT	1 cut(s)	1049
HpyCH4IV	ACGT	2 cut(s)	46, 751
HpyCH4V	TGCA	9 cut(s)	152, 196, 277, 389, 487, 676, 756, 788, 1019
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 620
HpyF3I	CTNAG	5 cut(s)	258, 372, 432, 627, 1126
HpySE526I	ACGT	2 cut(s)	46, 751
Hsp92II	CATG	5 cut(s)	767, 778, 1019, 1025, 1064
Ksp22I	TGATCA	1 cut(s)	1012
KspAI	GTTAAC	1 cut(s)	633
Kzo9I	GATC	5 cut(s)	265, 534, 889, 943, 1012
LmnI	GCTCC	3 cut(s)	490, 697, 833
Lsp1109I	GCAGC	3 cut(s)	164, 772, 848
LweI	GCATC	4 cut(s)	183, 201, 632, 685
MaeI	CTAG	2 cut(s)	770, 1085
MaeII	ACGT	2 cut(s)	46, 751
MaeIII	GTNAC	2 cut(s)	47, 973
MalI	GATC	5 cut(s)	267, 536, 891, 945, 1014
MboI	GATC	5 cut(s)	265, 534, 889, 943, 1012
MboII	GAAGA	8 cut(s)	59, 437, 472, 605, 653, 863, 881, 1064
MfeI	CAATTG	1 cut(s)	684
MhlI	GDGCHC	1 cut(s)	550
MluCI	AATT	9 cut(s)	240, 292, 671, 684, 792, 822, 897, 993, 1147
MlyI	GAGTC	2 cut(s)	169, 443
MmeI	TCCRAC	2 cut(s)	78, 827
MseI	TTAA	3 cut(s)	527, 632, 690
MslI	CAYNNNNRTG	3 cut(s)	482, 1020, 1026
MspA1I	CMGCKG	2 cut(s)	785, 839
MspR9I	CCNGG	3 cut(s)	219, 306, 819
MunI	CAATTG	1 cut(s)	684
MvaI	CCWGG	3 cut(s)	219, 306, 819
MwoI	GCNNNNNNNGC	2 cut(s)	260, 620
NdeII	GATC	5 cut(s)	265, 534, 889, 943, 1012
NlaIII	CATG	5 cut(s)	767, 778, 1019, 1025, 1064
NlaIV	GGNNCC	3 cut(s)	202, 303, 378
NspI	RCATGY	1 cut(s)	1064
PaeR7I	CTCGAG	1 cut(s)	1116
PciI	ACATGT	1 cut(s)	1060
PfeI	GAWTC	5 cut(s)	283, 353, 902, 962, 1031
PkrI	GCNGC	3 cut(s)	154, 787, 838
PleI	GAGTC	2 cut(s)	168, 443
PpsI	GAGTC	2 cut(s)	168, 443
PpuMI	RGGWCCY	1 cut(s)	376
PscI	ACATGT	1 cut(s)	1060
Psp1406I	AACGTT	2 cut(s)	46, 751
Psp5II	RGGWCCY	1 cut(s)	376
Psp6I	CCWGG	3 cut(s)	217, 304, 817
PspGI	CCWGG	3 cut(s)	217, 304, 817
PspN4I	GGNNCC	3 cut(s)	202, 303, 378
PspPI	GGNCC	1 cut(s)	376
PspPPI	RGGWCCY	1 cut(s)	376
PvuII	CAGCTG	2 cut(s)	785, 839
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
RseI	CAYNNNNRTG	3 cut(s)	482, 1020, 1026
SaqAI	TTAA	3 cut(s)	527, 632, 690
SatI	GCNGC	3 cut(s)	153, 786, 837
Sau3AI	GATC	5 cut(s)	265, 534, 889, 943, 1012
Sau96I	GGNCC	1 cut(s)	376
SchI	GAGTC	2 cut(s)	169, 443
ScrFI	CCNGG	3 cut(s)	219, 306, 819
SduI	GDGCHC	1 cut(s)	550
SfaNI	GCATC	4 cut(s)	183, 201, 632, 685
Sfr274I	CTCGAG	1 cut(s)	1116
SinI	GGWCC	1 cut(s)	376
SlaI	CTCGAG	1 cut(s)	1116
SmiMI	CAYNNNNRTG	3 cut(s)	482, 1020, 1026
SmlI	CTYRAG	4 cut(s)	10, 364, 451, 1116
SmoI	CTYRAG	4 cut(s)	10, 364, 451, 1116
Sse9I	AATT	9 cut(s)	240, 292, 671, 684, 792, 822, 897, 993, 1147
SspMI	CTAG	2 cut(s)	770, 1085
StyD4I	CCNGG	3 cut(s)	217, 304, 817
TaaI	ACNGT	1 cut(s)	1049
TaiI	ACGT	2 cut(s)	49, 754
TaqI	TCGA	1 cut(s)	1117
TasI	AATT	9 cut(s)	240, 292, 671, 684, 792, 822, 897, 993, 1147
TfiI	GAWTC	5 cut(s)	283, 353, 902, 962, 1031
Tru1I	TTAA	3 cut(s)	527, 632, 690
Tru9I	TTAA	3 cut(s)	527, 632, 690
TscAI	CASTG	4 cut(s)	114, 229, 279, 555
TseI	GCWGC	3 cut(s)	152, 785, 836
TspDTI	ATGAA	6 cut(s)	606, 791, 888, 954, 1038, 1071
TspGWI	ACGGA	1 cut(s)	846
TspRI	CASTG	4 cut(s)	114, 229, 279, 555
VpaK11BI	GGWCC	1 cut(s)	376
XapI	RAATTY	4 cut(s)	292, 822, 993, 1147
XceI	RCATGY	1 cut(s)	1064
XcmI	CCANNNNNNNNNTGG	2 cut(s)	173, 338
XhoI	CTCGAG	1 cut(s)	1116
XspI	CTAG	2 cut(s)	770, 1085

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.