Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007032

Physical Location & Seq

Genomic Coordinates Forward (+)

33998398 .. 33998818

Gene Structure 421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG318300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGAACGTTACAGGGAAGGTCAGCCTCTTCCAGCTACACTTCCAAGCAATGTTATGTTGGATGAGACACTGCTGTCGATGACAGGTCAACCAAAAGTGGGTTATGGAAATGCAGCTTGGAGTCCCCACCCTGGCTTTGGACAACATCAAGGGATGCAAGGTTCCCAGATGATGCCACCTGGCACTGGTTTGAGGCCACCAATTCAGGGAAATGCCCCTCAGGCTGATCGTACAGTGCAACCGAATCAGCAAAATTTGAGGGTGCCAGGGATGGAGGGCTTGGCTCAAAACCAGCTTGACAATGGGAAGCAGGATTCAGCCAACTCAAGACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0006810 GO:0006886 GO:0006897 GO:0006996 GO:0007010 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015629 GO:0015833 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030479 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0033036 GO:0034613 GO:0042886 GO:0043167 GO:0043169 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061645 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098657 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

111

Amino Acids

11.96

Weight (kDa)

6.71

Isoelectric Point (pI)

40.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20760
fragaria_vesca	FvH4_5g25580 FvH4_5g25580
malus_domestica	MD06G1007400.v1.1
prunus_persica	Prupe.5G009300_v2.0.a1 Prupe.5G009300_v2.0.a1
pyrus_communis	pycom06g00650 pycom06g00660
rosa_chinensis	RchiOBHm_Chr7g0215891 RchiOBHm_Chr7g0219801 RchiOBHm_Chr7g0219941
rosa_laevigata	RLG00000002612
rosa_multiflora	Rmu_co8383945.1_g000001 Rmu_sc0006240.1_g000011
rosa_roxburghii	Rroxscaffold_3G00243830
rosa_rugosa	Rorug07G0156400 Rorug07G0156500
rosa_samantha	Rh7AG294500 Rh7AG298200 Rh7BG286300 Rh7CG314500 Rh7CG318200 Rh7CG318300 Rh7DG297400
rosa_wichuraiana	Rw7G025020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	73
AccB1I	GGYRCC	1 cut(s)	262
AclI	AACGTT	1 cut(s)	7
AcsI	RAATTY	1 cut(s)	253
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	5 cut(s)	98, 131, 137, 185, 206
AjnI	CCWGG	3 cut(s)	130, 178, 265
AjuI	GAANNNNNNNTTGG	2 cut(s)	100, 132
AloI	GAACNNNNNNTCC	2 cut(s)	145, 177
AluBI	AGCT	3 cut(s)	35, 116, 295
AluI	AGCT	3 cut(s)	35, 116, 295
Alw26I	GTCTC	1 cut(s)	59
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	253
AxyI	CCTNAGG	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	1 cut(s)	265
BciT130I	CCWGG	3 cut(s)	132, 180, 267
BcoDI	GTCTC	1 cut(s)	59
BglI	GCCNNNNNGGC	1 cut(s)	221
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
Bme1390I	CCNGG	3 cut(s)	132, 180, 267
BmiI	GGNNCC	2 cut(s)	163, 264
BmrFI	CCNGG	3 cut(s)	132, 180, 267
BmsI	GCATC	2 cut(s)	144, 162
BpuEI	CTTGAG	1 cut(s)	310
BsaJI	CCNNGG	2 cut(s)	130, 266
Bsc4I	CCNNNNNNNGG	5 cut(s)	98, 131, 137, 185, 206
Bse1I	ACTGG	1 cut(s)	190
Bse21I	CCTNAGG	1 cut(s)	219
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	3 cut(s)	132, 180, 267
BseDI	CCNNGG	2 cut(s)	130, 266
BseGI	GGATG	3 cut(s)	67, 159, 276
BseLI	CCNNNNNNNGG	5 cut(s)	98, 131, 137, 185, 206
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	233
BseNI	ACTGG	1 cut(s)	190
BseXI	GCAGC	1 cut(s)	125
BshFI	GGCC	1 cut(s)	196
BshNI	GGYRCC	1 cut(s)	262
BslFI	GGGAC	1 cut(s)	108
BslI	CCNNNNNNNGG	5 cut(s)	98, 131, 137, 185, 206
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	108
BsnI	GGCC	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	226
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	2 cut(s)	163, 264
BspT107I	GGYRCC	1 cut(s)	262
BsrDI	GCAATG	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	2 cut(s)	130, 266
BssMI	GATC	1 cut(s)	226
Bst2UI	CCWGG	3 cut(s)	132, 180, 267
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	219
BstF5I	GGATG	3 cut(s)	67, 159, 276
BstKTI	GATC	1 cut(s)	229
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNI	CCWGG	3 cut(s)	132, 180, 267
BstSCI	CCNGG	3 cut(s)	130, 178, 265
BstV1I	GCAGC	1 cut(s)	125
Bsu36I	CCTNAGG	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	196
BtsCI	GGATG	3 cut(s)	67, 159, 276
BtsI	GCAGTG	1 cut(s)	68
BtsIMutI	CAGTG	3 cut(s)	68, 183, 240
Csp6I	GTAC	1 cut(s)	231
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
DrdI	GACNNNNNNGTC	1 cut(s)	73
DseDI	GACNNNNNNGTC	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco81I	CCTNAGG	1 cut(s)	219
EcoRII	CCWGG	3 cut(s)	130, 178, 265
FaiI	YATR	2 cut(s)	56, 105
FaqI	GGGAC	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	114
FokI	GGATG	3 cut(s)	74, 166, 283
Fsp4HI	GCNGC	1 cut(s)	114
GluI	GCNGC	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	196
HincII	GTYRAC	1 cut(s)	89
HindII	GTYRAC	1 cut(s)	89
HinfI	GANTC	3 cut(s)	121, 244, 314
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188III	TCNNGA	1 cut(s)	327
Hpy8I	GTNNAC	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	11
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	3 cut(s)	113, 157, 238
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	226
Lsp1109I	GCAGC	1 cut(s)	125
LweI	GCATC	2 cut(s)	144, 162
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	1 cut(s)	20
MluCI	AATT	2 cut(s)	201, 253
MlyI	GAGTC	1 cut(s)	130
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	5 cut(s)	36, 186, 228, 252, 268
MspR9I	CCNGG	3 cut(s)	132, 180, 267
MvaI	CCWGG	3 cut(s)	132, 180, 267
MwoI	GCNNNNNNNGC	1 cut(s)	221
NdeII	GATC	1 cut(s)	226
NlaIV	GGNNCC	2 cut(s)	163, 264
PfeI	GAWTC	2 cut(s)	244, 314
PkrI	GCNGC	1 cut(s)	115
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
Psp1406I	AACGTT	1 cut(s)	7
Psp6I	CCWGG	3 cut(s)	130, 178, 265
PspGI	CCWGG	3 cut(s)	130, 178, 265
PspN4I	GGNNCC	2 cut(s)	163, 264
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	1 cut(s)	226
SchI	GAGTC	1 cut(s)	130
ScrFI	CCNGG	3 cut(s)	132, 180, 267
SetI	ASST	8 cut(s)	10, 22, 37, 88, 118, 163, 181, 297
SfaNI	GCATC	2 cut(s)	144, 162
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
Sse9I	AATT	2 cut(s)	201, 253
StyD4I	CCNGG	3 cut(s)	130, 178, 265
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	1 cut(s)	77
TasI	AATT	2 cut(s)	201, 253
TfiI	GAWTC	2 cut(s)	244, 314
TscAI	CASTG	3 cut(s)	75, 190, 240
TseI	GCWGC	1 cut(s)	113
TspRI	CASTG	3 cut(s)	75, 190, 240
XapI	RAATTY	1 cut(s)	253
XcmI	CCANNNNNNNNNTGG	2 cut(s)	134, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.